10 20 30 40 50 60 70 80 2I04 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PEPTIDE BINDING PROTEIN 09-AUG-06 2I04
TITLE X-RAY CRYSTAL STRUCTURE OF MAGI-1 PDZ1 BOUND TO THE C- TITLE 2 TERMINAL PEPTIDE OF HPV18 E6
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-ASSOCIATED GUANYLATE KINASE, WW AND PDZ COMPND 3 DOMAIN-CONTAINING PROTEIN 1; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: PDZ1 DOMAIN; COMPND 6 SYNONYM: BAI1-ASSOCIATED PROTEIN 1, BAP-1, MEMBRANE- COMPND 7 ASSOCIATED GUANYLATE KINASE INVERTED 1, MAGI-1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PEPTIDE E6; COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XA90; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THE SEQUENCE OF THIS PEPTIDE CAN BE FOUND SOURCE 13 IN HUMAN PAPILLOMAVIRUS TYPE 18 (VIRUS)
KEYWDS PDZ, E6 BINDING, TUMOR SUPPRESSOR, PEPTIDE BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR X.S.CHEN,Y.ZHANG,J.DASGUPTA,L.BANKS,M.THOMAS
REVDAT 3 23-SEP-08 2I04 1 REMARK VERSN REVDAT 2 27-MAR-07 2I04 1 JRNL REVDAT 1 20-FEB-07 2I04 0
JRNL AUTH Y.ZHANG,J.DASGUPTA,R.Z.MA,L.BANKS,M.THOMAS,X.S.CHEN JRNL TITL STRUCTURES OF A HUMAN PAPILLOMAVIRUS (HPV) E6 JRNL TITL 2 POLYPEPTIDE BOUND TO MAGUK PROTEINS: MECHANISMS OF JRNL TITL 3 TARGETING TUMOR SUPPRESSORS BY A HIGH-RISK HPV JRNL TITL 4 ONCOPROTEIN. JRNL REF J.VIROL. V. 81 3618 2007 JRNL REFN ISSN 0022-538X JRNL PMID 17267502 JRNL DOI 10.1128/JVI.02044-06
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.THOMAS,B.GLAUNSINGER,D.PIM,R.JAVIER,L.BANKS REMARK 1 TITL HPV E6 AND MAGUK PROTEIN INTERACTIONS: REMARK 1 TITL 2 DETERMINATION OF THE MOLECULAR BASIS FOR SPECIFIC REMARK 1 TITL 3 PROTEIN RECOGNITION AND DEGRADATION. REMARK 1 REF ONCOGENE V. 20 5431 2001 REMARK 1 REFN ISSN 0950-9232 REMARK 1 PMID 11571640 REMARK 1 DOI 10.1038/SJ.ONC.1204719
REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 906461.480 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 8603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 478 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1330 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 70 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.037 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1374 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.61000 REMARK 3 B22 (A**2) : 0.64000 REMARK 3 B33 (A**2) : 1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.040 REMARK 3 BOND ANGLES (DEGREES) : 2.80 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.40 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.420 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.440 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.570 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.270 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 48.03 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2I04 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-06. REMARK 100 THE RCSB ID CODE IS RCSB038969.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : 1.54 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9305 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG2000, 0.1 M NA ACETATE , PH 4.6, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 291K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 13.80550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG C 2000 REMARK 465 ARG C 2001
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 450 OG REMARK 470 SER B 450 OG REMARK 470 ARG D2000 CG CD NE CZ NH1 NH2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 470 OE2 GLU A 474 1.77 REMARK 500 OXT ARG A 534 O HOH A 2139 1.97 REMARK 500 OD2 ASP A 470 NH2 ARG C 2002 2.09 REMARK 500 CA ASP A 470 NH2 ARG C 2002 2.13 REMARK 500 CG ASP A 470 NH2 ARG C 2002 2.15 REMARK 500 OE2 GLU D 2003 O HOH D 2031 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2052 O HOH B 2094 2756 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 459 C ARG A 460 N 0.143 REMARK 500 ARG A 460 C GLY A 461 N 0.162 REMARK 500 ASP A 470 C GLU A 471 N -0.192 REMARK 500 GLU A 471 C PRO A 472 N 0.222 REMARK 500 PRO A 472 C ASP A 473 N 0.185 REMARK 500 VAL A 500 C SER A 501 N 0.148 REMARK 500 ALA A 513 C GLN A 514 N 0.224 REMARK 500 VAL A 516 C LYS A 517 N 0.153 REMARK 500 GLN A 520 C SER A 521 N 0.194 REMARK 500 SER A 521 C ILE A 522 N 0.172 REMARK 500 LEU A 532 C CYS A 533 N -0.164 REMARK 500 CYS A 533 C ARG A 534 N 0.182 REMARK 500 ARG C2002 C GLU C2003 N -0.164 REMARK 500 GLN C2005 C VAL C2006 N -0.222 REMARK 500 SER B 459 C ARG B 460 N 0.176 REMARK 500 ASP B 484 C GLY B 485 N 0.199 REMARK 500 ALA B 488 C LEU B 489 N 0.161 REMARK 500 LEU B 489 C ASP B 490 N 0.149 REMARK 500 GLY B 496 C ASP B 497 N 0.210 REMARK 500 CYS B 506 C VAL B 507 N 0.152 REMARK 500 GLN B 514 C VAL B 515 N 0.161 REMARK 500 GLU D2003 C THR D2004 N -0.295 REMARK 500 GLN D2005 C VAL D2006 N -0.254 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 506 O - C - N ANGL. DEV. = -12.1 DEGREES REMARK 500 LEU A 508 O - C - N ANGL. DEV. = -11.1 DEGREES REMARK 500 GLY A 509 C - N - CA ANGL. DEV. = 13.7 DEGREES REMARK 500 HIS A 512 CA - C - N ANGL. DEV. = 13.4 DEGREES REMARK 500 HIS A 512 O - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 ALA A 513 C - N - CA ANGL. DEV. = 15.0 DEGREES REMARK 500 ALA A 513 O - C - N ANGL. DEV. = 12.3 DEGREES REMARK 500 CYS A 533 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 LEU A 532 CA - C - N ANGL. DEV. = 19.5 DEGREES REMARK 500 LEU A 532 O - C - N ANGL. DEV. = -19.3 DEGREES REMARK 500 CYS A 533 C - N - CA ANGL. DEV. = 21.1 DEGREES REMARK 500 ARG C2002 CA - C - N ANGL. DEV. = 17.5 DEGREES REMARK 500 ARG C2002 O - C - N ANGL. DEV. = -18.6 DEGREES REMARK 500 GLU C2003 O - C - N ANGL. DEV. = -12.8 DEGREES REMARK 500 ILE B 451 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 LEU B 489 O - C - N ANGL. DEV. = 10.4 DEGREES REMARK 500 ASN B 503 O - C - N ANGL. DEV. = 9.6 DEGREES REMARK 500 CYS B 533 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG D2001 C - N - CA ANGL. DEV. = 17.2 DEGREES REMARK 500 GLU D2003 O - C - N ANGL. DEV. = -10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 470 -76.26 -55.26 REMARK 500 ASP A 504 -21.92 74.47 REMARK 500 THR B 495 152.25 -48.59 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2255 DISTANCE = 6.50 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 900 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 901
DBREF 2I04 A 451 534 UNP Q6RHR9 MAGI1_MOUSE 463 546 DBREF 2I04 C 2000 2006 UNP P06463 VE6_HPV18 152 158 DBREF 2I04 B 451 534 UNP Q6RHR9 MAGI1_MOUSE 463 546 DBREF 2I04 D 2000 2006 UNP P06463 VE6_HPV18 152 158
SEQADV 2I04 SER A 450 UNP Q6RHR9 CLONING ARTIFACT SEQADV 2I04 SER B 450 UNP Q6RHR9 CLONING ARTIFACT
SEQRES 1 A 85 SER ILE HIS THR LYS LEU ARG LYS SER SER ARG GLY PHE SEQRES 2 A 85 GLY PHE THR VAL VAL GLY GLY ASP GLU PRO ASP GLU PHE SEQRES 3 A 85 LEU GLN ILE LYS SER LEU VAL LEU ASP GLY PRO ALA ALA SEQRES 4 A 85 LEU ASP GLY LYS MET GLU THR GLY ASP VAL ILE VAL SER SEQRES 5 A 85 VAL ASN ASP THR CYS VAL LEU GLY HIS THR HIS ALA GLN SEQRES 6 A 85 VAL VAL LYS ILE PHE GLN SER ILE PRO ILE GLY ALA SER SEQRES 7 A 85 VAL ASP LEU GLU LEU CYS ARG SEQRES 1 C 7 ARG ARG ARG GLU THR GLN VAL SEQRES 1 B 85 SER ILE HIS THR LYS LEU ARG LYS SER SER ARG GLY PHE SEQRES 2 B 85 GLY PHE THR VAL VAL GLY GLY ASP GLU PRO ASP GLU PHE SEQRES 3 B 85 LEU GLN ILE LYS SER LEU VAL LEU ASP GLY PRO ALA ALA SEQRES 4 B 85 LEU ASP GLY LYS MET GLU THR GLY ASP VAL ILE VAL SER SEQRES 5 B 85 VAL ASN ASP THR CYS VAL LEU GLY HIS THR HIS ALA GLN SEQRES 6 B 85 VAL VAL LYS ILE PHE GLN SER ILE PRO ILE GLY ALA SER SEQRES 7 B 85 VAL ASP LEU GLU LEU CYS ARG SEQRES 1 D 7 ARG ARG ARG GLU THR GLN VAL
HET SO4 B 900 5 HET SO4 A 901 5
HETNAM SO4 SULFATE ION
FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *224(H2 O)
HELIX 1 1 GLY A 485 GLY A 491 1 7 HELIX 2 2 THR A 511 SER A 521 1 11 HELIX 3 3 GLY B 485 GLY B 491 1 7 HELIX 4 4 THR B 511 SER B 521 1 11
SHEET 1 A 4 ILE A 451 ARG A 456 0 SHEET 2 A 4 SER A 527 CYS A 533 -1 O LEU A 530 N THR A 453 SHEET 3 A 4 VAL A 498 VAL A 502 -1 N VAL A 498 O CYS A 533 SHEET 4 A 4 THR A 505 CYS A 506 -1 O THR A 505 N VAL A 502 SHEET 1 B 3 LEU A 476 LEU A 481 0 SHEET 2 B 3 PHE A 464 GLY A 468 -1 N VAL A 467 O GLN A 477 SHEET 3 B 3 THR C2004 GLN C2005 -1 O THR C2004 N VAL A 466 SHEET 1 C 4 ILE B 451 ARG B 456 0 SHEET 2 C 4 SER B 527 CYS B 533 -1 O LEU B 532 N ILE B 451 SHEET 3 C 4 VAL B 498 VAL B 502 -1 N VAL B 498 O CYS B 533 SHEET 4 C 4 THR B 505 CYS B 506 -1 O THR B 505 N VAL B 502 SHEET 1 D 3 LEU B 476 LEU B 481 0 SHEET 2 D 3 PHE B 464 GLY B 468 -1 N THR B 465 O SER B 480 SHEET 3 D 3 GLU D2003 VAL D2006 -1 O VAL D2006 N PHE B 464
SSBOND 1 CYS A 506 CYS B 533 1555 1555 2.67 SSBOND 2 CYS A 533 CYS B 506 1555 1555 2.88
SITE 1 AC1 3 ARG B 456 SER B 458 SER B 459 SITE 1 AC2 6 ARG A 456 SER A 458 SER A 459 ILE A 524 SITE 2 AC2 6 HOH A2070 HOH D2107
CRYST1 48.961 27.611 59.525 90.00 105.42 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020424 0.000000 0.005633 0.00000
SCALE2 0.000000 0.036217 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017427 0.00000