10 20 30 40 50 60 70 80 2HZD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER GENE REGULATION 08-AUG-06 2HZD
TITLE NMR STRUCTURE OF THE DNA-BINDING TEA DOMAIN AND INSIGHTS TITLE 2 INTO TEF-1 FUNCTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL ENHANCER FACTOR TEF-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL TEA DOMAIN; COMPND 5 SYNONYM: TEA DOMAIN FAMILY MEMBER 1, TEAD-1, PROTEIN GT- COMPND 6 IIC, TRANSCRIPTION FACTOR 13, NTEF-1; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TEAD1, TCF13, TEF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21D
KEYWDS DNA-BINDING, HELIX-TURN-HELIX, GENE REGULATION
EXPDTA SOLUTION NMR
NUMMDL 25
AUTHOR A.ANBANANDAM,S.VEERARAGHAVAN
REVDAT 4 24-FEB-09 2HZD 1 VERSN REVDAT 3 20-FEB-07 2HZD 1 JRNL REVDAT 2 31-OCT-06 2HZD 1 HEADER REVDAT 1 24-OCT-06 2HZD 0
JRNL AUTH A.ANBANANDAM,D.C.ALBARADO,C.T.NGUYEN,G.HALDER, JRNL AUTH 2 X.GAO,S.VEERARAGHAVAN JRNL TITL INSIGHTS INTO TRANSCRIPTION ENHANCER FACTOR 1 JRNL TITL 2 (TEF-1) ACTIVITY FROM THE SOLUTION STRUCTURE OF JRNL TITL 3 THE TEA DOMAIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 17225 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 17085591 JRNL DOI 10.1073/PNAS.0607171103
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2HZD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-06. REMARK 100 THE RCSB ID CODE IS RCSB038942.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 285 REMARK 210 PH : 5.85 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.3 MM TEA U-15N, 13C, 100 MM REMARK 210 PHOSPHATE BUFFER, 95% H2O, 5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: 3D TRIPLE RESONANCE EXPERIMENTS
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 32 84.65 -160.05 REMARK 500 1 ASP A 36 -65.94 -97.99 REMARK 500 1 TYR A 41 -175.34 -69.37 REMARK 500 1 THR A 55 30.57 -162.10 REMARK 500 1 THR A 58 170.24 -47.82 REMARK 500 1 ARG A 59 66.83 -155.41 REMARK 500 1 LEU A 79 95.68 -64.63 REMARK 500 1 VAL A 80 109.38 -58.70 REMARK 500 2 ASP A 2 92.50 -61.31 REMARK 500 2 ARG A 29 99.61 -59.80 REMARK 500 2 ARG A 30 -172.86 -59.72 REMARK 500 2 ASP A 36 -69.60 -125.07 REMARK 500 2 THR A 55 29.88 -163.15 REMARK 500 2 THR A 58 170.20 -47.97 REMARK 500 2 ARG A 59 66.85 -155.42 REMARK 500 2 LEU A 79 87.00 -61.33 REMARK 500 3 ARG A 29 92.93 -58.85 REMARK 500 3 ASP A 36 -69.67 -125.03 REMARK 500 3 THR A 55 29.91 -163.17 REMARK 500 3 THR A 58 170.03 -47.94 REMARK 500 3 ARG A 59 66.92 -155.31 REMARK 500 3 LEU A 79 77.35 -65.99 REMARK 500 3 PRO A 81 76.14 -66.75 REMARK 500 4 ASP A 2 92.05 -61.77 REMARK 500 4 CYS A 27 88.66 -62.12 REMARK 500 4 ARG A 29 98.81 -59.02 REMARK 500 4 ILE A 32 114.72 -163.71 REMARK 500 4 ILE A 33 109.72 -164.26 REMARK 500 4 ASP A 36 -70.49 -125.21 REMARK 500 4 LYS A 57 87.56 -171.83 REMARK 500 4 ARG A 59 66.60 -155.22 REMARK 500 4 LEU A 79 81.05 -64.28 REMARK 500 4 PRO A 81 96.17 -67.75 REMARK 500 5 ARG A 30 -178.77 -59.15 REMARK 500 5 LYS A 31 -176.34 -59.59 REMARK 500 5 LYS A 57 87.50 -167.76 REMARK 500 5 ARG A 59 66.85 -155.71 REMARK 500 5 LEU A 79 86.23 -60.69 REMARK 500 6 SER A 10 108.90 -56.83 REMARK 500 6 ARG A 29 -170.91 -62.28 REMARK 500 6 ASP A 36 -70.98 -105.40 REMARK 500 6 LYS A 57 87.42 -167.83 REMARK 500 6 ARG A 59 66.42 -155.00 REMARK 500 6 LEU A 79 76.51 -66.45 REMARK 500 6 PRO A 81 63.40 -68.83 REMARK 500 7 SER A 10 109.31 -58.68 REMARK 500 7 TYR A 24 75.54 -104.72 REMARK 500 7 PRO A 25 174.08 -56.40 REMARK 500 7 LYS A 31 -171.93 -60.30 REMARK 500 7 THR A 58 169.41 -47.07 REMARK 500 7 ARG A 59 66.90 -154.06 REMARK 500 7 LEU A 79 78.11 -65.27 REMARK 500 7 PRO A 81 63.35 -68.73 REMARK 500 8 ASP A 2 88.47 -61.09 REMARK 500 8 TYR A 24 75.77 -104.91 REMARK 500 8 THR A 55 30.59 -163.12 REMARK 500 8 THR A 58 168.58 -47.81 REMARK 500 8 ARG A 59 66.89 -155.43 REMARK 500 9 TYR A 24 79.59 -119.07 REMARK 500 9 ARG A 30 -172.58 -58.61 REMARK 500 9 LYS A 31 106.79 -49.83 REMARK 500 9 LEU A 34 34.39 -81.98 REMARK 500 9 THR A 55 28.09 -163.21 REMARK 500 9 THR A 58 170.31 -57.11 REMARK 500 9 ARG A 59 67.06 -155.51 REMARK 500 9 LEU A 79 83.26 -62.57 REMARK 500 9 PRO A 81 99.72 -67.17 REMARK 500 10 ASP A 2 99.16 -60.97 REMARK 500 10 TRP A 9 97.91 -61.07 REMARK 500 10 ILE A 32 -179.37 -69.70 REMARK 500 10 ILE A 33 126.80 -171.93 REMARK 500 10 ASP A 36 -74.10 -116.72 REMARK 500 10 TYR A 41 -175.90 -69.95 REMARK 500 10 THR A 58 163.38 -47.28 REMARK 500 10 ARG A 59 67.02 -155.62 REMARK 500 10 LEU A 79 90.68 -56.10 REMARK 500 11 ARG A 29 92.93 -59.34 REMARK 500 11 ARG A 30 -178.24 -62.26 REMARK 500 11 LEU A 34 30.21 -98.51 REMARK 500 11 ASP A 36 -55.27 -125.22 REMARK 500 11 LYS A 57 87.44 -167.96 REMARK 500 11 ARG A 59 66.58 -155.22 REMARK 500 11 LEU A 79 83.52 -62.56 REMARK 500 12 ASP A 2 87.21 -60.17 REMARK 500 12 ILE A 32 112.40 -165.31 REMARK 500 12 ASP A 36 -73.97 -125.15 REMARK 500 12 THR A 58 165.78 -47.49 REMARK 500 12 ARG A 59 67.31 -155.91 REMARK 500 12 THR A 60 154.63 -46.27 REMARK 500 12 LEU A 79 69.96 -68.72 REMARK 500 12 PRO A 81 63.44 -68.83 REMARK 500 13 TRP A 9 102.10 -58.48 REMARK 500 13 TYR A 24 76.70 -108.56 REMARK 500 13 PRO A 25 176.50 -47.52 REMARK 500 13 ARG A 29 -166.61 -58.33 REMARK 500 13 ARG A 30 151.12 -44.04 REMARK 500 13 LYS A 57 87.47 -168.22 REMARK 500 13 ARG A 59 66.47 -154.99 REMARK 500 13 LEU A 79 81.16 -64.05 REMARK 500 14 TYR A 41 83.75 -155.62 REMARK 500 14 ARG A 43 -70.12 -77.92 REMARK 500 14 LYS A 57 89.62 -164.58 REMARK 500 14 ARG A 59 66.69 -155.58 REMARK 500 14 LEU A 79 77.37 -66.16 REMARK 500 15 ASP A 36 -70.09 -80.75 REMARK 500 15 LYS A 57 87.69 -162.73 REMARK 500 15 ARG A 59 66.58 -155.30 REMARK 500 15 LEU A 79 82.77 -62.88 REMARK 500 15 PRO A 81 91.43 -68.30 REMARK 500 16 CYS A 27 90.46 -64.27 REMARK 500 16 ASP A 36 -61.24 -125.03 REMARK 500 16 THR A 55 29.58 -163.15 REMARK 500 16 THR A 58 167.51 -47.88 REMARK 500 16 ARG A 59 66.72 -155.51 REMARK 500 16 LEU A 79 71.98 -68.55 REMARK 500 17 ARG A 29 92.92 -64.08 REMARK 500 17 LYS A 31 94.79 -64.03 REMARK 500 17 SER A 35 -82.05 -122.89 REMARK 500 17 TYR A 41 83.76 -69.67 REMARK 500 17 LYS A 57 87.44 -168.35 REMARK 500 17 ARG A 59 66.64 -154.94 REMARK 500 17 VAL A 80 109.32 -58.51 REMARK 500 18 ASP A 2 89.05 -61.09 REMARK 500 18 TRP A 9 -179.26 -61.82 REMARK 500 18 LYS A 31 94.95 -61.12 REMARK 500 18 ILE A 33 87.04 -159.27 REMARK 500 18 SER A 35 -80.54 -122.30 REMARK 500 18 TYR A 41 83.83 -69.92 REMARK 500 18 ARG A 59 66.37 -155.49 REMARK 500 18 LEU A 79 81.34 -63.90 REMARK 500 19 LYS A 31 94.80 -63.58 REMARK 500 19 ILE A 33 122.91 -175.10 REMARK 500 19 LEU A 34 34.40 -95.21 REMARK 500 19 LYS A 57 87.69 -168.46 REMARK 500 19 ARG A 59 67.00 -155.76 REMARK 500 20 SER A 10 109.04 -57.77 REMARK 500 20 ARG A 29 92.95 -63.35 REMARK 500 20 ASP A 36 -65.95 -125.28 REMARK 500 20 THR A 58 170.08 -48.69 REMARK 500 20 ARG A 59 66.91 -155.65 REMARK 500 20 ASP A 78 -45.48 -131.29 REMARK 500 21 ASP A 2 84.78 -62.18 REMARK 500 21 TRP A 9 97.82 -58.39 REMARK 500 21 TYR A 41 -175.47 -69.43 REMARK 500 21 LYS A 57 87.88 -167.17 REMARK 500 21 ARG A 59 67.02 -155.73 REMARK 500 21 LEU A 79 77.70 -65.52 REMARK 500 22 VAL A 8 -80.35 -128.56 REMARK 500 22 ILE A 33 79.62 -169.24 REMARK 500 22 TYR A 41 -177.08 -69.90 REMARK 500 22 LYS A 57 87.51 -168.31 REMARK 500 22 ARG A 59 66.41 -154.92 REMARK 500 22 LEU A 79 85.42 -61.55 REMARK 500 23 ILE A 32 116.80 -166.34 REMARK 500 23 ASP A 36 -60.77 -105.10 REMARK 500 23 TYR A 41 -175.64 -69.70 REMARK 500 23 THR A 58 166.36 -47.08 REMARK 500 23 ARG A 59 66.95 -155.38 REMARK 500 23 ASP A 78 30.03 -97.17 REMARK 500 23 LEU A 79 94.10 -60.45 REMARK 500 24 ASP A 2 -179.99 -60.10 REMARK 500 24 TYR A 24 76.87 -114.12 REMARK 500 24 CYS A 27 74.00 -161.38 REMARK 500 24 ARG A 30 86.86 -64.12 REMARK 500 24 ASP A 36 -63.84 -101.82 REMARK 500 24 THR A 55 -39.70 -163.52 REMARK 500 24 THR A 58 170.12 -47.54 REMARK 500 24 ARG A 59 66.87 -155.59 REMARK 500 24 ASP A 78 30.33 -94.42 REMARK 500 24 LEU A 79 79.98 -64.94 REMARK 500 24 VAL A 80 109.58 -59.12 REMARK 500 24 PRO A 81 94.99 -68.29 REMARK 500 25 ASP A 4 -79.48 -119.24 REMARK 500 25 CYS A 27 88.48 -59.93 REMARK 500 25 ARG A 30 96.37 -59.78 REMARK 500 25 LYS A 31 94.94 -61.48 REMARK 500 25 ASP A 36 -60.27 -125.15 REMARK 500 25 LYS A 57 87.56 -167.38 REMARK 500 25 ARG A 59 66.74 -155.19 REMARK 500 25 VAL A 80 108.99 -58.15 REMARK 500 25 PRO A 81 63.38 -69.09 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2HZD A 2 78 UNP P28347 TEAD1_HUMAN 28 104
SEQADV 2HZD MET A 1 UNP P28347 INITIATING METHIONINE SEQADV 2HZD SER A 22 UNP P28347 ALA 48 CONFLICT SEQADV 2HZD LEU A 79 UNP P28347 CLONING ARTIFACT SEQADV 2HZD VAL A 80 UNP P28347 CLONING ARTIFACT SEQADV 2HZD PRO A 81 UNP P28347 CLONING ARTIFACT SEQADV 2HZD ARG A 82 UNP P28347 CLONING ARTIFACT
SEQRES 1 A 82 MET ASP ASN ASP ALA GLU GLY VAL TRP SER PRO ASP ILE SEQRES 2 A 82 GLU GLN SER PHE GLN GLU ALA LEU SER ILE TYR PRO PRO SEQRES 3 A 82 CYS GLY ARG ARG LYS ILE ILE LEU SER ASP GLU GLY LYS SEQRES 4 A 82 MET TYR GLY ARG ASN GLU LEU ILE ALA ARG TYR ILE LYS SEQRES 5 A 82 LEU ARG THR GLY LYS THR ARG THR ARG LYS GLN VAL SER SEQRES 6 A 82 SER HIS ILE GLN VAL LEU ALA ARG ARG LYS SER ARG ASP SEQRES 7 A 82 LEU VAL PRO ARG
HELIX 1 1 ASP A 2 GLU A 6 5 5 HELIX 2 2 SER A 10 TYR A 24 1 15 HELIX 3 3 ILE A 33 GLY A 38 1 6 HELIX 4 4 ARG A 43 GLY A 56 1 14 HELIX 5 5 ARG A 61 SER A 76 1 16
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000