10 20 30 40 50 60 70 80 2HWY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 02-AUG-06 2HWY
TITLE STRUCTURE OF PIN DOMAIN OF HUMAN SMG5.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SMG5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PINC DOMAIN; COMPND 5 SYNONYM: SMG-5 HOMOLOG, EST1-LIKE PROTEIN B, LPTS- COMPND 6 INTERACTING PROTEIN, LPTS-RP1; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMG5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEXCS
KEYWDS RNA DEGRADATION, DECAY, NMD, EST1A, P BODIES, RNA BINDING KEYWDS 2 PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR F.GLAVAN,I.BEHM-ANSMANT,E.IZAURRALDE,E.CONTI
REVDAT 2 24-FEB-09 2HWY 1 VERSN REVDAT 1 14-NOV-06 2HWY 0
JRNL AUTH F.GLAVAN,I.BEHM-ANSMANT,E.IZAURRALDE,E.CONTI JRNL TITL STRUCTURES OF THE PIN DOMAINS OF SMG6 AND SMG5 JRNL TITL 2 REVEAL A NUCLEASE WITHIN THE MRNA SURVEILLANCE JRNL TITL 3 COMPLEX. JRNL REF EMBO J. V. 25 5117 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 17053788 JRNL DOI 10.1038/SJ.EMBOJ.7601377
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 6050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.275 REMARK 3 R VALUE (WORKING SET) : 0.271 REMARK 3 FREE R VALUE : 0.329 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.600 REMARK 3 FREE R VALUE TEST SET COUNT : 495 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 445 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1816 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.99000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 2.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.38000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.488 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.415 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 45.008 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.882 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.839 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1689 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1584 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2298 ; 1.366 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3630 ; 1.053 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 217 ; 7.112 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;31.847 ;22.969 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 226 ;19.676 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.911 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 274 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1880 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 340 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 446 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1671 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 850 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1034 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 31 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.248 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.238 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.101 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1439 ; 0.461 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 458 ; 0.065 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1769 ; 0.556 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 714 ; 0.863 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 529 ; 1.241 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS; TLS
REMARK 4 REMARK 4 2HWY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-06. REMARK 100 THE RCSB ID CODE IS RCSB038856.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6552 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32700 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY: 2HWW REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 100 MM CITRATE PH 5.5 REMARK 280 , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.26700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 853 REMARK 465 SER A 854 REMARK 465 LYS A 897 REMARK 465 LYS A 924 REMARK 465 GLU A 925 REMARK 465 VAL A 926 REMARK 465 GLY A 927 REMARK 465 LYS A 928 REMARK 465 SER A 929 REMARK 465 PHE A 930 REMARK 465 GLU A 931 REMARK 465 ARG A 932 REMARK 465 HIS A 933 REMARK 465 LYS A 934 REMARK 465 LEU A 935 REMARK 465 LYS A 936 REMARK 465 ARG A 937 REMARK 465 GLN A 938 REMARK 465 ASP A 939 REMARK 465 ALA A 940 REMARK 465 ASP A 941 REMARK 465 ALA A 942 REMARK 465 TRP A 943 REMARK 465 THR A 944 REMARK 465 GLY A 960 REMARK 465 ALA A 961 REMARK 465 GLY A 962 REMARK 465 GLU A 963 REMARK 465 GLU A 964 REMARK 465 ASP A 965 REMARK 465 PRO A 966 REMARK 465 SER A 967 REMARK 465 GLY A 968 REMARK 465 MET A 969 REMARK 465 VAL A 970 REMARK 465 THR A 971 REMARK 465 ILE A 972 REMARK 465 ILE A 973 REMARK 465 THR A 974 REMARK 465 GLY A 975 REMARK 465 PRO A 987 REMARK 465 MET A 988 REMARK 465 GLN A 989 REMARK 465 ALA A 990 REMARK 465 LYS A 1013 REMARK 465 GLU A 1014 REMARK 465 ILE A 1015 REMARK 465 GLY A 1016 REMARK 465 MET B 853 REMARK 465 SER B 854 REMARK 465 LYS B 897 REMARK 465 VAL B 926 REMARK 465 GLY B 927 REMARK 465 LYS B 928 REMARK 465 SER B 929 REMARK 465 PHE B 930 REMARK 465 GLU B 931 REMARK 465 ARG B 932 REMARK 465 HIS B 933 REMARK 465 LYS B 934 REMARK 465 LEU B 935 REMARK 465 LYS B 936 REMARK 465 ARG B 937 REMARK 465 GLN B 938 REMARK 465 ASP B 939 REMARK 465 ALA B 940 REMARK 465 ASP B 941 REMARK 465 ALA B 942 REMARK 465 TRP B 943 REMARK 465 GLY B 960 REMARK 465 ALA B 961 REMARK 465 GLY B 962 REMARK 465 GLU B 963 REMARK 465 GLU B 964 REMARK 465 ASP B 965 REMARK 465 PRO B 966 REMARK 465 SER B 967 REMARK 465 GLY B 968 REMARK 465 MET B 969 REMARK 465 VAL B 970 REMARK 465 THR B 971 REMARK 465 ILE B 972 REMARK 465 ILE B 973 REMARK 465 THR B 974 REMARK 465 GLY B 975 REMARK 465 LEU B 976 REMARK 465 PRO B 977 REMARK 465 LEU B 983A REMARK 465 SER B 983B REMARK 465 GLY B 983C REMARK 465 PRO B 983D REMARK 465 MET B 983E REMARK 465 GLN B 983F REMARK 465 ALA B 983G REMARK 465 ALA B 983H REMARK 465 LEU B 983I REMARK 465 GLN B 983J REMARK 465 ALA B 998 REMARK 465 GLU B 1014 REMARK 465 ILE B 1015 REMARK 465 GLY B 1016
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 896 CG CD CE NZ REMARK 480 GLU A 898 CG CD OE1 OE2 REMARK 480 ARG A 907 CD NE CZ NH1 NH2 REMARK 480 LYS A 915 CG CD CE NZ REMARK 480 GLN A 923 CG CD OE1 NE2 REMARK 480 LEU A 945 CB CG CD1 CD2 REMARK 480 TYR A 946 CD1 CD2 CE1 CE2 CZ OH REMARK 480 LYS A 947 CG CD CE NZ REMARK 480 ILE A 948 CG1 CG2 CD1 REMARK 480 LEU A 949 CG CD1 CD2 REMARK 480 GLN A 954 CG CD OE1 NE2 REMARK 480 LEU A 957 CG CD1 CD2 REMARK 480 GLN A 959 CG CD OE1 NE2 REMARK 480 LEU A 976 CG CD1 CD2 REMARK 480 LEU A 984 CG CD1 CD2 REMARK 480 LEU A 992 CB CG CD1 CD2 REMARK 480 GLN A 993 CG CD OE1 NE2 REMARK 480 ASP A 1001 CG OD1 OD2 REMARK 480 LYS A 1003 CG CD CE NZ REMARK 480 ASP A 1007 CG OD1 OD2 REMARK 480 ARG B 879 CG CD NE CZ NH1 NH2 REMARK 480 LEU B 894 CG CD1 CD2 REMARK 480 LYS B 896 CG CD CE NZ REMARK 480 GLU B 898 CG CD OE1 OE2 REMARK 480 ARG B 907 CD NE CZ NH1 NH2 REMARK 480 LYS B 915 CG CD CE NZ REMARK 480 ARG B 918 CG CD NE CZ NH1 NH2 REMARK 480 GLN B 923 CG CD OE1 NE2 REMARK 480 THR B 944 CB OG1 CG2 REMARK 480 LEU B 945 CB CG CD1 CD2 REMARK 480 LYS B 947 CG CD CE NZ REMARK 480 ILE B 948 CG1 CG2 CD1 REMARK 480 LEU B 949 CB CG CD1 CD2 REMARK 480 ASP B 950 CG OD1 OD2 REMARK 480 LYS B 953 CG CD CE NZ REMARK 480 GLN B 954 CG CD OE1 NE2 REMARK 480 LEU B 957 CG CD1 CD2 REMARK 480 GLN B 959 CG CD OE1 NE2 REMARK 480 HIS B 996 CG ND1 CD2 CE1 NE2 REMARK 480 ASP B 1001 CG OD1 OD2 REMARK 480 LYS B 1003 CG CD CE NZ REMARK 480 LEU B 1006 CG CD1 CD2 REMARK 480 LYS B 1013 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ALA B 993 ND1 HIS B 996 1.65 REMARK 500 CB PRO A 885 OE1 GLN A 954 1.80 REMARK 500 NZ LYS B 1003 OE1 GLN B 1011 1.82 REMARK 500 CG2 ILE B 883 NE2 GLN B 923 1.86 REMARK 500 O LEU A 945 CG1 ILE A 948 1.97 REMARK 500 N ALA B 993 CE1 HIS B 996 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 919 CD2 LEU A 957 2556 1.07 REMARK 500 CD2 HIS B 996 NZ LYS B 1010 2655 1.54 REMARK 500 CZ TYR A 919 CD2 LEU A 957 2556 2.04 REMARK 500 OD2 ASP A 1001 O SER B 877 1455 2.10 REMARK 500 NE2 HIS B 996 NZ LYS B 1010 2655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 982 CB - CA - C ANGL. DEV. = -21.2 DEGREES REMARK 500 VAL A 983 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 867 43.74 -144.82 REMARK 500 PRO A 981 -165.80 -107.79 REMARK 500 SER A 982 -167.95 -110.51 REMARK 500 PRO B 981 -166.19 -105.97 REMARK 500 ALA B 995 40.64 -87.80 REMARK 500 ASP B1001 154.49 -47.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 985 GLY A 986 -147.56 REMARK 500 HIS A 997 ALA A 998 -148.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 982 -10.46 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2HWY A 853 1016 UNP Q9UPR3 SMG5_HUMAN 853 1016 DBREF 2HWY B 853 1016 UNP Q9UPR3 SMG5_HUMAN 853 1016
SEQRES 1 A 164 MET SER PRO TYR LEU VAL PRO ASP THR GLN ALA LEU CYS SEQRES 2 A 164 HIS HIS LEU PRO VAL ILE ARG GLN LEU ALA THR SER GLY SEQRES 3 A 164 ARG PHE ILE VAL ILE ILE PRO ARG THR VAL ILE ASP GLY SEQRES 4 A 164 LEU ASP LEU LEU LYS LYS GLU HIS PRO GLY ALA ARG ASP SEQRES 5 A 164 GLY ILE ARG TYR LEU GLU ALA GLU PHE LYS LYS GLY ASN SEQRES 6 A 164 ARG TYR ILE ARG CYS GLN LYS GLU VAL GLY LYS SER PHE SEQRES 7 A 164 GLU ARG HIS LYS LEU LYS ARG GLN ASP ALA ASP ALA TRP SEQRES 8 A 164 THR LEU TYR LYS ILE LEU ASP SER CYS LYS GLN LEU THR SEQRES 9 A 164 LEU ALA GLN GLY ALA GLY GLU GLU ASP PRO SER GLY MET SEQRES 10 A 164 VAL THR ILE ILE THR GLY LEU PRO LEU ASP ASN PRO SER SEQRES 11 A 164 VAL LEU SER GLY PRO MET GLN ALA ALA LEU GLN ALA ALA SEQRES 12 A 164 ALA HIS ALA SER VAL ASP ILE LYS ASN VAL LEU ASP PHE SEQRES 13 A 164 TYR LYS GLN TRP LYS GLU ILE GLY SEQRES 1 B 164 MET SER PRO TYR LEU VAL PRO ASP THR GLN ALA LEU CYS SEQRES 2 B 164 HIS HIS LEU PRO VAL ILE ARG GLN LEU ALA THR SER GLY SEQRES 3 B 164 ARG PHE ILE VAL ILE ILE PRO ARG THR VAL ILE ASP GLY SEQRES 4 B 164 LEU ASP LEU LEU LYS LYS GLU HIS PRO GLY ALA ARG ASP SEQRES 5 B 164 GLY ILE ARG TYR LEU GLU ALA GLU PHE LYS LYS GLY ASN SEQRES 6 B 164 ARG TYR ILE ARG CYS GLN LYS GLU VAL GLY LYS SER PHE SEQRES 7 B 164 GLU ARG HIS LYS LEU LYS ARG GLN ASP ALA ASP ALA TRP SEQRES 8 B 164 THR LEU TYR LYS ILE LEU ASP SER CYS LYS GLN LEU THR SEQRES 9 B 164 LEU ALA GLN GLY ALA GLY GLU GLU ASP PRO SER GLY MET SEQRES 10 B 164 VAL THR ILE ILE THR GLY LEU PRO LEU ASP ASN PRO SER SEQRES 11 B 164 VAL LEU SER GLY PRO MET GLN ALA ALA LEU GLN ALA ALA SEQRES 12 B 164 ALA HIS ALA SER VAL ASP ILE LYS ASN VAL LEU ASP PHE SEQRES 13 B 164 TYR LYS GLN TRP LYS GLU ILE GLY
HELIX 1 1 ASP A 860 HIS A 867 1 8 HELIX 2 2 HIS A 867 GLY A 878 1 12 HELIX 3 3 PRO A 885 LYS A 896 1 12 HELIX 4 4 HIS A 899 GLY A 916 1 18 HELIX 5 5 LEU A 945 THR A 956 1 12 HELIX 6 6 ALA A 991 HIS A 997 1 7 HELIX 7 7 ASN A 1004 TRP A 1012 1 9 HELIX 8 8 ASP B 860 HIS B 867 1 8 HELIX 9 9 HIS B 867 SER B 877 1 11 HELIX 10 10 PRO B 885 LYS B 896 1 12 HELIX 11 11 HIS B 899 LYS B 915 1 17 HELIX 12 12 TYR B 946 GLN B 959 1 14 HELIX 13 13 ASN B 1004 GLN B 1011 1 8
SHEET 1 A 5 ILE A 920 CYS A 922 0 SHEET 2 A 5 ILE A 881 ILE A 884 1 N VAL A 882 O ARG A 921 SHEET 3 A 5 TYR A 856 PRO A 859 1 N LEU A 857 O ILE A 881 SHEET 4 A 5 PRO A 977 ASN A 980 1 O LEU A 978 N VAL A 858 SHEET 5 A 5 ASP A1001 ILE A1002 1 O ASP A1001 N ASP A 979 SHEET 1 B 4 ILE B 920 CYS B 922 0 SHEET 2 B 4 ILE B 881 ILE B 884 1 N ILE B 884 O ARG B 921 SHEET 3 B 4 TYR B 856 PRO B 859 1 N LEU B 857 O ILE B 883 SHEET 4 B 4 ASP B 979 ASN B 980 1 O ASN B 980 N VAL B 858
CRYST1 45.591 42.534 65.103 90.00 95.98 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.021934 0.000000 0.002298 0.00000
SCALE2 0.000000 0.023511 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015444 0.00000