10 20 30 40 50 60 70 80 2HV4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ELECTRON TRANSPORT 27-JUL-06 2HV4
TITLE NMR SOLUTION STRUCTURE REFINEMENT OF YEAST ISO-1- TITLE 2 FERROCYTOCHROME C
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C ISO-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CYC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS HEME PROTEIN, ELECTRON TRANSPORT
EXPDTA SOLUTION NMR
NUMMDL 35
AUTHOR M.ASSFALG,I.BERTINI,R.DEL CONTE,P.TURANO
REVDAT 3 24-FEB-09 2HV4 1 VERSN REVDAT 2 04-NOV-08 2HV4 1 JRNL REVDAT 1 26-SEP-06 2HV4 0
JRNL AUTH M.ASSFALG,I.BERTINI,R.DEL CONTE,A.GIACHETTI, JRNL AUTH 2 P.TURANO JRNL TITL CYTOCHROME C AND ORGANIC MOLECULES: SOLUTION JRNL TITL 2 STRUCTURE OF THE P-AMINOPHENOL ADDUCT. JRNL REF BIOCHEMISTRY V. 46 6232 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17488096 JRNL DOI 10.1021/BI7002857
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 8.0 REMARK 3 AUTHORS : PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON, REMARK 3 SEIBEL,SINGH,WEINER,KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2HV4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-06. REMARK 100 THE RCSB ID CODE IS RCSB038798.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 50 MM PHOSPHATE BUFFER REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2-3 MM CYTOCHROME C, 50 MM REMARK 210 PHOSPHATE BUFFER, PH 7.0, 90% REMARK 210 H2O, 10% D2O; 2-3 MM REMARK 210 CYTOCHROME C U-15N, 50 MM REMARK 210 PHOSPHATE BUFFER, PH 7.0, 90% REMARK 210 H2O, 10% D2O; 2-3 MM REMARK 210 CYTOCHROME C U-15N,13C, 50 MM REMARK 210 PHOSPHATE BUFFER, PH 7.0, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, 3D_15N- REMARK 210 SEPARATED_NOESY, HNHA, 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, DYANA 1.5 REMARK 210 METHOD USED : SIMULATED ANNEALING IN REMARK 210 TORSION ANGLE SPACE FOLLOWED REMARK 210 BY RESTRAINED ENERGY REMARK 210 MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 35 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE PRESENT STRUCTURE IS A REFINEMENT OF 1YFC OBTAINED REMARK 210 THROUGH HETERONUCLEAR NMR EXPERIMENTS AT HIGHER MAGNETIC REMARK 210 FIELD, AND ADDITIONAL STRUCTURAL CONSTRAINTS. RESONANCES REMARK 210 ASSIGNMENT WAS BASED ON HNCA, HN(CO)CA, (H)CCH-TOCSY, H(C)CH- REMARK 210 TOCSY, CBCA(CO)NH, AND CCC(CO)NH EXPERIMENTS
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 5 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 5 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 6 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 7 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 11 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 15 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 20 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 20 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 22 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 25 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 26 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 26 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 27 ARG A 91 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 29 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 30 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 31 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 33 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 33 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 34 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A -4 91.46 -160.31 REMARK 500 1 PHE A -3 73.77 -63.73 REMARK 500 1 LYS A -2 93.82 -68.45 REMARK 500 1 ARG A 13 -43.15 -141.64 REMARK 500 1 VAL A 20 -6.28 -145.83 REMARK 500 1 LYS A 27 -117.55 -142.16 REMARK 500 1 PRO A 30 -178.01 -69.25 REMARK 500 1 HIS A 33 92.40 -66.20 REMARK 500 1 TYR A 48 -162.49 -70.83 REMARK 500 1 LYS A 54 -7.61 -59.18 REMARK 500 1 ASN A 56 59.72 17.83 REMARK 500 1 PHE A 82 -75.87 -39.53 REMARK 500 2 GLU A -4 -70.69 -125.04 REMARK 500 2 ALA A -1 117.24 -32.77 REMARK 500 2 ARG A 13 -54.42 -129.15 REMARK 500 2 LYS A 27 -137.60 -119.62 REMARK 500 2 GLU A 44 64.76 -62.99 REMARK 500 2 ASN A 56 62.34 22.51 REMARK 500 2 TRP A 59 86.60 -68.38 REMARK 500 2 ASN A 70 89.37 -153.60 REMARK 500 2 ALA A 81 2.03 -60.91 REMARK 500 2 PHE A 82 170.96 -56.72 REMARK 500 3 ALA A -1 178.85 58.28 REMARK 500 3 CYS A 14 -46.31 -138.12 REMARK 500 3 VAL A 20 -30.60 -135.79 REMARK 500 3 LYS A 27 -154.37 -68.41 REMARK 500 3 HIS A 33 -94.87 20.80 REMARK 500 3 TYR A 48 -117.30 -72.62 REMARK 500 3 ASN A 56 58.87 23.65 REMARK 500 3 ASN A 70 88.02 -153.06 REMARK 500 3 PHE A 82 -105.93 -53.27 REMARK 500 4 PHE A -3 79.58 -57.34 REMARK 500 4 HIS A 26 80.13 -69.77 REMARK 500 4 LYS A 27 -87.62 -72.34 REMARK 500 4 GLU A 44 82.40 -68.38 REMARK 500 4 TYR A 48 -111.25 -96.07 REMARK 500 4 ASN A 56 64.66 30.06 REMARK 500 4 MET A 80 83.17 -67.98 REMARK 500 4 PHE A 82 -31.22 -38.86 REMARK 500 5 GLU A -4 -39.80 -35.15 REMARK 500 5 ALA A -1 164.85 60.02 REMARK 500 5 LYS A 22 97.74 -65.07 REMARK 500 5 LYS A 27 -85.46 -117.49 REMARK 500 5 LEU A 32 22.13 -73.58 REMARK 500 5 HIS A 33 -94.28 -63.72 REMARK 500 5 GLU A 44 82.71 -60.13 REMARK 500 5 TYR A 48 -162.52 -62.07 REMARK 500 5 ASN A 56 62.66 22.11 REMARK 500 5 ASN A 70 70.04 -163.59 REMARK 500 5 PRO A 76 95.02 -68.85 REMARK 500 5 MET A 80 74.25 -68.70 REMARK 500 5 ALA A 81 3.16 -64.58 REMARK 500 6 GLU A -4 -71.85 -126.39 REMARK 500 6 CYS A 14 -36.99 -140.56 REMARK 500 6 VAL A 28 -46.83 -141.36 REMARK 500 6 LYS A 55 -60.85 -100.81 REMARK 500 6 ALA A 81 4.63 -61.20 REMARK 500 6 LYS A 86 25.22 -62.34 REMARK 500 6 GLU A 88 -58.46 -29.40 REMARK 500 7 GLU A -4 -71.85 -155.72 REMARK 500 7 CYS A 14 -36.99 -140.56 REMARK 500 7 VAL A 28 -46.83 -141.36 REMARK 500 7 LYS A 55 -60.85 -100.81 REMARK 500 7 ALA A 81 4.63 -61.20 REMARK 500 7 LYS A 86 25.22 -62.34 REMARK 500 7 GLU A 88 -58.46 -29.40 REMARK 500 8 GLU A -4 1.31 -2.03 REMARK 500 8 PHE A -3 151.39 59.20 REMARK 500 8 ARG A 13 -38.28 -140.41 REMARK 500 8 CYS A 14 -41.34 -132.28 REMARK 500 8 LYS A 27 -122.45 -127.29 REMARK 500 8 TYR A 48 -142.46 -65.19 REMARK 500 8 LYS A 54 2.42 -66.57 REMARK 500 8 ASN A 56 61.67 22.21 REMARK 500 8 TRP A 59 91.44 -68.56 REMARK 500 8 ASN A 70 88.14 -158.79 REMARK 500 8 MET A 80 81.91 -66.55 REMARK 500 9 GLU A -4 1.31 -46.22 REMARK 500 9 PHE A -3 151.39 59.20 REMARK 500 9 ARG A 13 -38.28 -140.41 REMARK 500 9 CYS A 14 -41.34 -132.28 REMARK 500 9 LYS A 27 -122.45 -127.29 REMARK 500 9 TYR A 48 -142.46 -65.19 REMARK 500 9 LYS A 54 2.42 -66.57 REMARK 500 9 ASN A 56 61.67 22.21 REMARK 500 9 TRP A 59 91.44 -68.56 REMARK 500 9 ASN A 70 88.14 -158.79 REMARK 500 9 MET A 80 81.91 -66.55 REMARK 500 10 GLU A -4 40.14 -99.20 REMARK 500 10 PHE A -3 -171.37 58.12 REMARK 500 10 SER A 2 -6.51 -162.37 REMARK 500 10 LYS A 4 -4.41 -49.66 REMARK 500 10 CYS A 14 -39.46 -132.14 REMARK 500 10 VAL A 20 -8.78 -140.05 REMARK 500 10 GLN A 42 15.03 -140.08 REMARK 500 10 GLU A 44 84.49 -57.36 REMARK 500 10 ASN A 56 59.43 16.07 REMARK 500 10 TRP A 59 99.49 -61.83 REMARK 500 10 MET A 80 72.88 -65.96 REMARK 500 10 ALA A 81 5.61 -66.22 REMARK 500 10 PHE A 82 -141.68 -58.62 REMARK 500 11 GLU A -4 -90.84 -160.11 REMARK 500 11 ALA A -1 174.17 55.27 REMARK 500 11 ARG A 13 -38.03 -142.31 REMARK 500 11 CYS A 14 -41.38 -130.16 REMARK 500 11 HIS A 26 85.94 -64.83 REMARK 500 11 LYS A 27 -157.70 -69.00 REMARK 500 11 HIS A 33 26.24 -64.20 REMARK 500 11 ILE A 35 -139.25 -78.69 REMARK 500 11 PHE A 36 87.60 52.36 REMARK 500 11 ALA A 43 -177.79 -63.66 REMARK 500 11 GLU A 44 82.94 -67.59 REMARK 500 11 TYR A 48 -110.61 -118.65 REMARK 500 11 LYS A 54 2.22 -67.36 REMARK 500 11 ASN A 56 64.49 34.04 REMARK 500 11 ASN A 70 81.66 -158.27 REMARK 500 11 MET A 80 75.57 -69.30 REMARK 500 11 ALA A 81 0.70 -66.71 REMARK 500 11 PHE A 82 -93.54 -57.17 REMARK 500 11 LYS A 87 105.73 -49.12 REMARK 500 12 CYS A 14 -38.21 -135.14 REMARK 500 12 VAL A 20 -6.27 -141.61 REMARK 500 12 LYS A 27 -150.59 -104.09 REMARK 500 12 PRO A 30 179.60 -55.14 REMARK 500 12 SER A 47 86.82 -66.94 REMARK 500 12 TYR A 48 170.94 -59.15 REMARK 500 12 ASN A 56 50.64 23.19 REMARK 500 12 PHE A 82 -123.84 -55.27 REMARK 500 12 LYS A 86 27.62 -65.74 REMARK 500 13 GLU A -4 -54.24 -141.46 REMARK 500 13 PHE A -3 83.16 36.81 REMARK 500 13 LYS A -2 80.39 -65.76 REMARK 500 13 ARG A 13 -41.95 -140.97 REMARK 500 13 VAL A 20 -24.34 -146.34 REMARK 500 13 LYS A 27 -126.66 -130.30 REMARK 500 13 GLU A 44 74.70 -60.66 REMARK 500 13 TYR A 48 -106.05 -79.28 REMARK 500 13 ASN A 56 68.03 31.60 REMARK 500 13 ASN A 70 83.59 -154.99 REMARK 500 13 MET A 80 82.83 -66.87 REMARK 500 14 PHE A -3 97.48 -54.31 REMARK 500 14 CYS A 14 -31.90 -132.02 REMARK 500 14 HIS A 26 127.49 -38.81 REMARK 500 14 LYS A 27 -126.62 -128.03 REMARK 500 14 ASN A 56 57.91 13.57 REMARK 500 14 LEU A 58 106.08 -59.60 REMARK 500 14 ASN A 70 79.21 -156.00 REMARK 500 14 PHE A 82 -69.01 -24.05 REMARK 500 15 GLU A -4 96.05 -171.76 REMARK 500 15 PHE A -3 79.98 -65.45 REMARK 500 15 LYS A -2 82.03 -62.59 REMARK 500 15 VAL A 20 -34.99 -152.81 REMARK 500 15 LYS A 27 -146.45 -117.54 REMARK 500 15 HIS A 33 -90.41 1.74 REMARK 500 15 TYR A 48 170.39 -59.49 REMARK 500 15 ASN A 56 73.79 12.75 REMARK 500 15 MET A 80 83.63 -64.57 REMARK 500 15 LYS A 86 4.56 -59.87 REMARK 500 16 GLU A -4 -89.09 -133.61 REMARK 500 16 ALA A -1 151.70 68.50 REMARK 500 16 CYS A 14 -33.95 -136.47 REMARK 500 16 VAL A 20 -44.91 -140.93 REMARK 500 16 LYS A 27 -138.48 -126.56 REMARK 500 16 HIS A 33 -108.08 40.14 REMARK 500 16 ALA A 43 -178.99 -65.90 REMARK 500 16 ASN A 56 48.79 35.29 REMARK 500 16 TRP A 59 85.86 -66.37 REMARK 500 16 PRO A 76 99.73 -65.43 REMARK 500 16 MET A 80 87.40 -67.87 REMARK 500 17 ALA A -1 152.74 64.24 REMARK 500 17 SER A 2 -24.22 -165.36 REMARK 500 17 HIS A 26 78.70 -69.31 REMARK 500 17 VAL A 28 -36.07 -146.51 REMARK 500 17 LEU A 32 3.87 -68.87 REMARK 500 17 HIS A 33 84.24 -65.44 REMARK 500 17 GLU A 44 53.94 -65.28 REMARK 500 17 LYS A 54 -4.21 -59.71 REMARK 500 17 ASN A 56 58.57 19.80 REMARK 500 17 TRP A 59 99.67 -67.80 REMARK 500 17 ASN A 70 84.33 -167.71 REMARK 500 17 ALA A 81 5.66 -62.79 REMARK 500 18 ARG A 13 -64.38 -141.97 REMARK 500 18 VAL A 20 -4.11 -143.96 REMARK 500 18 LYS A 27 -155.35 -141.13 REMARK 500 18 HIS A 33 93.31 -61.33 REMARK 500 18 TYR A 48 -119.85 -69.93 REMARK 500 18 LYS A 54 1.37 -64.59 REMARK 500 18 ASN A 56 52.18 35.60 REMARK 500 18 TRP A 59 83.23 -67.26 REMARK 500 18 PRO A 76 95.55 -69.70 REMARK 500 18 MET A 80 76.50 -67.82 REMARK 500 18 ALA A 81 3.79 -67.66 REMARK 500 18 PHE A 82 -103.16 -66.27 REMARK 500 19 GLU A -4 -80.69 -159.54 REMARK 500 19 LYS A -2 16.65 -157.14 REMARK 500 19 ALA A -1 162.29 58.89 REMARK 500 19 ARG A 13 -48.37 -132.24 REMARK 500 19 LYS A 27 -113.95 -144.31 REMARK 500 19 GLU A 44 -19.99 -47.96 REMARK 500 19 ASN A 56 54.81 29.49 REMARK 500 19 TRP A 59 97.67 -67.41 REMARK 500 19 ASN A 70 75.34 -150.56 REMARK 500 19 PRO A 76 97.84 -69.02 REMARK 500 19 MET A 80 73.62 -69.75 REMARK 500 19 ALA A 81 4.80 -63.24 REMARK 500 19 LYS A 86 -37.74 -138.23 REMARK 500 20 LYS A 27 -78.70 -86.74 REMARK 500 20 TYR A 48 175.25 -58.99 REMARK 500 20 LYS A 54 -7.28 -57.55 REMARK 500 20 ASN A 56 43.10 35.55 REMARK 500 20 LYS A 72 4.00 -64.72 REMARK 500 21 PHE A -3 89.27 -43.95 REMARK 500 21 LYS A -2 93.25 -69.85 REMARK 500 21 ARG A 13 -51.05 -141.41 REMARK 500 21 LYS A 27 -125.86 -118.58 REMARK 500 21 GLU A 44 94.57 -56.02 REMARK 500 21 TYR A 48 171.88 -59.13 REMARK 500 21 LYS A 54 -5.13 -59.19 REMARK 500 21 ASN A 56 58.95 25.29 REMARK 500 21 ILE A 75 79.82 -119.23 REMARK 500 21 MET A 80 81.04 -65.48 REMARK 500 21 ALA A 81 6.40 -69.44 REMARK 500 21 LYS A 86 -45.24 -134.25 REMARK 500 22 PHE A -3 69.02 -66.18 REMARK 500 22 LYS A -2 26.41 -75.78 REMARK 500 22 ALA A -1 167.03 53.29 REMARK 500 22 CYS A 14 -39.95 -135.37 REMARK 500 22 LYS A 27 -119.55 -125.39 REMARK 500 22 TYR A 48 -114.83 -93.56 REMARK 500 22 LYS A 54 -9.58 -59.17 REMARK 500 22 ASN A 56 67.48 8.80 REMARK 500 22 ASN A 70 58.48 -146.94 REMARK 500 22 LYS A 86 3.05 -64.83 REMARK 500 22 THR A 102 -7.14 -148.36 REMARK 500 23 PHE A -3 88.45 -48.35 REMARK 500 23 CYS A 14 -41.72 -132.38 REMARK 500 23 VAL A 20 -20.29 -146.36 REMARK 500 23 LYS A 27 -112.54 -143.74 REMARK 500 23 PRO A 30 -173.76 -69.13 REMARK 500 23 HIS A 33 94.52 -66.64 REMARK 500 23 LYS A 54 -9.87 -56.26 REMARK 500 23 ASN A 56 57.06 19.49 REMARK 500 23 ASN A 70 79.87 -159.65 REMARK 500 23 MET A 80 80.95 -69.30 REMARK 500 24 PHE A -3 93.30 -59.82 REMARK 500 24 ARG A 13 -63.71 -141.11 REMARK 500 24 LYS A 27 -107.94 -132.96 REMARK 500 24 ASN A 56 66.52 16.03 REMARK 500 24 MET A 80 73.55 -68.38 REMARK 500 25 ALA A -1 155.92 -47.62 REMARK 500 25 ARG A 13 -38.03 -141.77 REMARK 500 25 CYS A 14 -32.21 -138.75 REMARK 500 25 HIS A 26 100.03 -56.40 REMARK 500 25 LYS A 27 -159.72 -81.32 REMARK 500 25 PRO A 30 -178.46 -66.06 REMARK 500 25 GLU A 44 74.66 -62.79 REMARK 500 25 TYR A 48 -97.69 -74.56 REMARK 500 25 LYS A 54 -8.10 -59.10 REMARK 500 25 ASN A 56 59.30 20.63 REMARK 500 25 MET A 80 83.12 -60.72 REMARK 500 25 PHE A 82 172.14 -58.90 REMARK 500 26 ALA A -1 172.26 66.32 REMARK 500 26 ARG A 13 -57.91 -127.51 REMARK 500 26 LYS A 27 -118.17 -139.27 REMARK 500 26 PRO A 30 -166.23 -78.12 REMARK 500 26 PHE A 36 97.28 -64.27 REMARK 500 26 SER A 47 143.06 62.61 REMARK 500 26 LYS A 54 11.33 -63.97 REMARK 500 26 ASN A 56 49.20 26.23 REMARK 500 26 MET A 80 76.67 -65.86 REMARK 500 26 ALA A 81 1.04 -62.26 REMARK 500 27 PHE A -3 -178.67 60.65 REMARK 500 27 ARG A 13 -56.54 -134.52 REMARK 500 27 HIS A 26 92.69 -63.35 REMARK 500 27 LYS A 27 -117.04 -77.15 REMARK 500 27 ASN A 56 49.94 32.95 REMARK 500 27 TRP A 59 74.72 -68.97 REMARK 500 27 ASN A 70 91.97 -161.43 REMARK 500 27 MET A 80 81.01 -69.99 REMARK 500 28 GLU A -4 -20.69 74.13 REMARK 500 28 ALA A -1 152.32 73.56 REMARK 500 28 CYS A 14 -45.57 -134.29 REMARK 500 28 LYS A 27 -134.98 -143.89 REMARK 500 28 TYR A 48 -118.14 -82.22 REMARK 500 28 ASN A 56 54.26 29.05 REMARK 500 28 ALA A 81 1.35 -62.34 REMARK 500 28 LYS A 86 30.52 -70.25 REMARK 500 29 LYS A -2 12.27 -158.00 REMARK 500 29 ALA A -1 165.68 61.10 REMARK 500 29 HIS A 26 107.82 -56.91 REMARK 500 29 LYS A 27 -150.06 -75.25 REMARK 500 29 PRO A 30 -168.36 -75.97 REMARK 500 29 HIS A 33 -113.24 -65.72 REMARK 500 29 SER A 40 98.86 -53.72 REMARK 500 29 GLU A 44 -4.73 -56.87 REMARK 500 29 TYR A 48 -115.87 -63.61 REMARK 500 29 LYS A 54 8.37 -69.42 REMARK 500 29 TRP A 59 95.69 -67.73 REMARK 500 29 LEU A 68 0.67 -67.82 REMARK 500 29 MET A 80 84.10 -62.28 REMARK 500 30 GLU A -4 -11.01 68.10 REMARK 500 30 ARG A 13 -39.15 -139.54 REMARK 500 30 CYS A 14 -35.34 -132.62 REMARK 500 30 LYS A 27 -143.50 -147.23 REMARK 500 30 ALA A 43 88.31 -64.54 REMARK 500 30 ASN A 56 40.47 35.44 REMARK 500 30 PRO A 76 85.75 -68.95 REMARK 500 30 MET A 80 87.30 -66.65 REMARK 500 30 LYS A 86 43.70 -68.47 REMARK 500 31 ALA A -1 165.37 62.00 REMARK 500 31 CYS A 14 -36.62 -138.53 REMARK 500 31 LYS A 27 -165.98 -59.88 REMARK 500 31 TYR A 48 -119.71 -75.32 REMARK 500 31 ASN A 56 38.78 34.34 REMARK 500 31 ASN A 70 62.64 -163.86 REMARK 500 31 MET A 80 82.99 -67.66 REMARK 500 31 LYS A 86 31.30 -69.38 REMARK 500 32 GLU A -4 -99.57 -127.54 REMARK 500 32 ALA A -1 155.68 -48.62 REMARK 500 32 ARG A 13 -48.63 -135.14 REMARK 500 32 LYS A 27 -108.68 -122.94 REMARK 500 32 LYS A 54 13.23 -62.80 REMARK 500 32 ASN A 56 46.18 38.99 REMARK 500 32 TRP A 59 105.13 -59.74 REMARK 500 32 MET A 80 74.89 -68.30 REMARK 500 32 ALA A 81 0.39 -61.68 REMARK 500 32 LYS A 86 16.96 -61.79 REMARK 500 33 PHE A -3 171.04 62.92 REMARK 500 33 CYS A 14 -39.75 -132.89 REMARK 500 33 VAL A 28 -46.40 -137.19 REMARK 500 33 GLU A 44 -94.66 -89.35 REMARK 500 33 LYS A 54 4.97 -66.72 REMARK 500 33 ASN A 56 54.79 18.98 REMARK 500 33 LEU A 58 108.58 -59.89 REMARK 500 33 ASN A 70 90.08 -160.26 REMARK 500 33 PRO A 76 99.56 -68.79 REMARK 500 34 GLU A -4 110.05 100.83 REMARK 500 34 PHE A -3 72.34 -65.01 REMARK 500 34 ARG A 13 -40.62 -134.01 REMARK 500 34 LYS A 27 -124.54 -116.37 REMARK 500 34 TYR A 48 -114.39 -70.09 REMARK 500 34 ASN A 56 51.23 24.85 REMARK 500 34 TRP A 59 99.62 -56.51 REMARK 500 34 MET A 80 84.85 -67.15 REMARK 500 35 HIS A 26 89.94 -65.75 REMARK 500 35 LYS A 27 -161.75 -60.79 REMARK 500 35 SER A 40 109.22 -50.59 REMARK 500 35 GLU A 44 78.64 -67.87 REMARK 500 35 TYR A 48 -107.88 -90.16 REMARK 500 35 ASN A 56 50.01 23.40 REMARK 500 35 MET A 80 96.34 -60.64 REMARK 500 35 LYS A 86 -61.67 50.99 REMARK 500 35 LYS A 87 102.49 -43.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A -4 PHE A -3 6 144.08 REMARK 500 GLU A -4 PHE A -3 7 144.08 REMARK 500 THR A -5 GLU A -4 10 -144.85 REMARK 500 LYS A 100 ALA A 101 14 149.01 REMARK 500 THR A -5 GLU A -4 22 143.59 REMARK 500 THR A -5 GLU A -4 27 -148.54 REMARK 500 GLU A -4 PHE A -3 28 138.77 REMARK 500 GLU A 21 LYS A 22 30 149.31 REMARK 500 GLU A -4 PHE A -3 31 144.60 REMARK 500 GLN A 42 ALA A 43 33 149.49 REMARK 500 THR A -5 GLU A -4 34 -143.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 46 0.07 SIDE_CHAIN REMARK 500 2 TYR A 48 0.08 SIDE_CHAIN REMARK 500 3 ARG A 13 0.08 SIDE_CHAIN REMARK 500 3 TYR A 48 0.07 SIDE_CHAIN REMARK 500 4 TYR A 97 0.08 SIDE_CHAIN REMARK 500 5 TYR A 67 0.08 SIDE_CHAIN REMARK 500 8 TYR A 46 0.08 SIDE_CHAIN REMARK 500 8 TYR A 48 0.10 SIDE_CHAIN REMARK 500 9 TYR A 46 0.08 SIDE_CHAIN REMARK 500 9 TYR A 48 0.10 SIDE_CHAIN REMARK 500 12 ARG A 13 0.10 SIDE_CHAIN REMARK 500 15 ARG A 13 0.12 SIDE_CHAIN REMARK 500 15 TYR A 46 0.08 SIDE_CHAIN REMARK 500 15 ARG A 91 0.08 SIDE_CHAIN REMARK 500 16 TYR A 48 0.07 SIDE_CHAIN REMARK 500 16 ARG A 91 0.15 SIDE_CHAIN REMARK 500 18 TYR A 46 0.07 SIDE_CHAIN REMARK 500 18 TYR A 74 0.07 SIDE_CHAIN REMARK 500 18 ARG A 91 0.09 SIDE_CHAIN REMARK 500 19 ARG A 91 0.10 SIDE_CHAIN REMARK 500 20 TYR A 46 0.07 SIDE_CHAIN REMARK 500 20 TYR A 74 0.07 SIDE_CHAIN REMARK 500 22 ARG A 13 0.09 SIDE_CHAIN REMARK 500 22 TYR A 48 0.10 SIDE_CHAIN REMARK 500 24 ARG A 38 0.12 SIDE_CHAIN REMARK 500 24 TYR A 48 0.08 SIDE_CHAIN REMARK 500 25 TYR A 48 0.09 SIDE_CHAIN REMARK 500 29 TYR A 67 0.07 SIDE_CHAIN REMARK 500 30 TYR A 97 0.08 SIDE_CHAIN REMARK 500 31 TYR A 46 0.07 SIDE_CHAIN REMARK 500 31 TYR A 48 0.08 SIDE_CHAIN REMARK 500 33 TYR A 48 0.07 SIDE_CHAIN REMARK 500 33 TYR A 74 0.07 SIDE_CHAIN REMARK 500 34 TYR A 48 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 HEC A 104 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 MET A 80 SD 171.2 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 104
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YCC RELATED DB: PDB REMARK 900 HIGH-RESOLUTION REFINEMENT OF YEAST ISO-1-CYTOCHROME C AND REMARK 900 COMPARISONS WITH OTHER EUKARYOTIC CYTOCHROMES C REMARK 900 RELATED ID: 1YFC RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF A YEAST ISO-1-FERROCYTOCHROME C
DBREF 2HV4 A -5 103 UNP P00044 CYC1_YEAST 1 108
SEQADV 2HV4 THR A 102 UNP P00044 CYS 107 ENGINEERED
SEQRES 1 A 108 THR GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 A 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 A 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 A 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 A 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 A 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 A 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 A 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 A 108 LYS ALA THR GLU
HET HEC A 104 75
HETNAM HEC HEME C
FORMUL 2 HEC C34 H34 FE N4 O4
HELIX 1 1 SER A 2 LYS A 11 1 10 HELIX 2 2 THR A 49 ASN A 56 1 8 HELIX 3 3 ASP A 60 ASN A 70 1 11 HELIX 4 4 ASN A 70 ILE A 75 1 6 HELIX 5 5 LYS A 87 ALA A 101 1 15
LINK SG CYS A 14 CAB HEC A 104 1555 1555 1.81 LINK SG CYS A 17 CAC HEC A 104 1555 1555 1.82 LINK NE2 HIS A 18 FE HEC A 104 1555 1555 2.16 LINK SD MET A 80 FE HEC A 104 1555 1555 2.39
SITE 1 AC1 18 ARG A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 18 VAL A 28 LEU A 32 SER A 40 GLY A 41 SITE 3 AC1 18 TYR A 48 THR A 49 ASN A 52 TRP A 59 SITE 4 AC1 18 TYR A 67 LEU A 68 THR A 78 LYS A 79 SITE 5 AC1 18 MET A 80 LEU A 85
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000