10 20 30 40 50 60 70 80 2HOU - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA 16-JUL-06 2HOU
TITLE STRUCTURE ENSEMBLES OF DUPLEX DNA CONTAINING A 4'-OXIDIZED TITLE 2 ABASIC SITE.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*CP*AP*AP*AP*GP*(X4A)P*AP*CP*CP*GP*GP*G)- COMPND 3 3'; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: STRAND CONTAINING 4'-OXIDIZED ABASIC SITE; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*CP*CP*CP*GP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3'; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: TEMPLATE STRAND
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES
KEYWDS ABASIC SITE, DNA LESION, BER, BLEOMYCIN
EXPDTA SOLUTION NMR
NUMMDL 10
MDLTYP MINIMIZED AVERAGE
AUTHOR J.CHEN,F.Y.DUPRADEAU,D.A.CASE,C.J.TURNER,J.STUBBE
REVDAT 2 24-FEB-09 2HOU 1 VERSN REVDAT 1 29-MAY-07 2HOU 0
JRNL AUTH J.CHEN,F.Y.DUPRADEAU,D.A.CASE,C.J.TURNER,J.STUBBE JRNL TITL NUCLEAR MAGNETIC RESONANCE STRUCTURAL STUDIES AND JRNL TITL 2 MOLECULAR MODELING OF DUPLEX DNA CONTAINING NORMAL JRNL TITL 3 AND 4'-OXIDIZED ABASIC SITES. JRNL REF BIOCHEMISTRY V. 46 3096 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17323932 JRNL DOI 10.1021/BI6024269
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 8.0 REMARK 3 AUTHORS : D.A. CASE ET AL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 410 NOE- REMARK 3 DERIVED DISTANCE CONSTRAINTS AND 43 DIHEDRAL ANGLE RESTRAINTS, REMARK 3 8 DISTANCE RESTRAINTS FROM HYDROGEN BONDS.
REMARK 4 REMARK 4 2HOU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-06. REMARK 100 THE RCSB ID CODE IS RCSB038590.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 277 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : 1ATM; 1ATM REMARK 210 SAMPLE CONTENTS : 2.0 MM DUPLEX DNA CONTAINING REMARK 210 A 4'-OXIDIZED ABASIC SITE IN REMARK 210 10 MM SODIUM PHOSPHATE AND 0.2 REMARK 210 MM EDTA, PH 6.5, 90% H2O, 10% REMARK 210 D2O; 2.0 MM DUPLEX DNA REMARK 210 CONTAINING A 4'-OXIDIZED REMARK 210 ABASIC SITE IN 10 MM SODIUM REMARK 210 PHOSPHATE AND 0.2 MM EDTA, PH REMARK 210 6.5, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, E-COSY, REMARK 210 PE-COSY, GE-HSQC, PH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ, 591 MHZ REMARK 210 SPECTROMETER MODEL : CUSTOM-BUILT REMARK 210 SPECTROMETER MANUFACTURER : CUSTOM-BUILT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2001, MARDIGRAS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DC A 2 C5 DC A 2 C6 0.053 REMARK 500 1 DA A 3 C4' DA A 3 C3' 0.063 REMARK 500 1 DA A 3 O4' DA A 3 C4' -0.069 REMARK 500 1 DA A 3 N3 DA A 3 C4 0.071 REMARK 500 1 DA A 3 C5 DA A 3 C6 0.066 REMARK 500 1 DA A 4 N3 DA A 4 C4 0.045 REMARK 500 1 DA A 4 N9 DA A 4 C4 -0.068 REMARK 500 1 DA A 5 C2 DA A 5 N3 0.054 REMARK 500 1 DA A 5 C6 DA A 5 N6 -0.049 REMARK 500 1 DG A 6 C5 DG A 6 N7 0.070 REMARK 500 1 DA A 8 C2' DA A 8 C1' -0.082 REMARK 500 1 DA A 8 O4' DA A 8 C4' -0.088 REMARK 500 1 DA A 8 N3 DA A 8 C4 0.038 REMARK 500 1 DC A 9 C4 DC A 9 N4 -0.059 REMARK 500 1 DC A 10 C3' DC A 10 C2' -0.054 REMARK 500 1 DC A 10 N1 DC A 10 C6 0.045 REMARK 500 1 DG A 11 P DG A 11 O5' 0.091 REMARK 500 1 DG A 11 C5' DG A 11 C4' 0.108 REMARK 500 1 DG A 11 N1 DG A 11 C2 0.053 REMARK 500 1 DG A 11 C5 DG A 11 N7 0.068 REMARK 500 1 DG A 13 C5' DG A 13 C4' 0.064 REMARK 500 1 DG A 13 N1 DG A 13 C2 -0.052 REMARK 500 1 DG A 13 C5 DG A 13 N7 0.039 REMARK 500 1 DG A 13 C2 DG A 13 N2 -0.109 REMARK 500 1 DC B 14 C5 DC B 14 C6 0.054 REMARK 500 1 DC B 15 C5' DC B 15 C4' 0.072 REMARK 500 1 DC B 15 C2 DC B 15 O2 -0.079 REMARK 500 1 DC B 15 N1 DC B 15 C6 0.043 REMARK 500 1 DC B 16 C5' DC B 16 C4' 0.058 REMARK 500 1 DT B 19 N3 DT B 19 C4 -0.068 REMARK 500 1 DA B 20 C5' DA B 20 C4' 0.050 REMARK 500 1 DA B 20 C2' DA B 20 C1' 0.067 REMARK 500 1 DA B 20 O4' DA B 20 C4' -0.067 REMARK 500 1 DA B 20 C6 DA B 20 N1 -0.048 REMARK 500 1 DT B 22 O3' DT B 22 C3' -0.089 REMARK 500 1 DT B 22 C4 DT B 22 C5 0.055 REMARK 500 1 DT B 22 C5 DT B 22 C7 0.039 REMARK 500 1 DT B 23 C5' DT B 23 C4' 0.052 REMARK 500 1 DT B 23 C6 DT B 23 N1 0.052 REMARK 500 1 DT B 23 C2 DT B 23 O2 0.056 REMARK 500 1 DT B 24 P DT B 24 O5' 0.065 REMARK 500 1 DT B 24 C5 DT B 24 C7 0.063 REMARK 500 1 DG B 25 C5' DG B 25 C4' 0.097 REMARK 500 1 DG B 25 C5 DG B 25 C6 0.071 REMARK 500 1 DG B 25 C2 DG B 25 N2 -0.079 REMARK 500 1 DG B 26 N3 DG B 26 C4 0.059 REMARK 500 1 DG B 26 C4 DG B 26 C5 0.048 REMARK 500 1 DG B 26 C5 DG B 26 C6 0.061 REMARK 500 2 DC A 1 C5' DC A 1 C4' 0.061 REMARK 500 2 DA A 3 C3' DA A 3 C2' 0.094 REMARK 500 REMARK 500 THIS ENTRY HAS 492 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DC A 1 O4' - C1' - C2' ANGL. DEV. = -5.3 DEGREES REMARK 500 1 DC A 1 O4' - C1' - N1 ANGL. DEV. = 6.3 DEGREES REMARK 500 1 DC A 1 N3 - C4 - C5 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DC A 1 C5 - C6 - N1 ANGL. DEV. = -3.9 DEGREES REMARK 500 1 DC A 1 C5 - C4 - N4 ANGL. DEV. = -7.5 DEGREES REMARK 500 1 DC A 2 C6 - N1 - C2 ANGL. DEV. = -3.1 DEGREES REMARK 500 1 DC A 2 C2 - N3 - C4 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DC A 2 N3 - C4 - C5 ANGL. DEV. = -3.3 DEGREES REMARK 500 1 DC A 2 C5 - C6 - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 DC A 2 N1 - C2 - O2 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 DA A 3 O4' - C1' - N9 ANGL. DEV. = 10.9 DEGREES REMARK 500 1 DA A 3 C4 - C5 - C6 ANGL. DEV. = -7.5 DEGREES REMARK 500 1 DA A 3 C5 - C6 - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 1 DA A 3 C6 - C5 - N7 ANGL. DEV. = 8.2 DEGREES REMARK 500 1 DA A 3 N1 - C6 - N6 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 DA A 4 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 DA A 4 C6 - N1 - C2 ANGL. DEV. = -4.7 DEGREES REMARK 500 1 DA A 4 C2 - N3 - C4 ANGL. DEV. = 5.8 DEGREES REMARK 500 1 DA A 4 C4 - C5 - C6 ANGL. DEV. = -3.4 DEGREES REMARK 500 1 DA A 4 C5 - C6 - N1 ANGL. DEV. = 6.8 DEGREES REMARK 500 1 DA A 4 N9 - C4 - C5 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DA A 5 C2 - N3 - C4 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 DA A 5 N1 - C6 - N6 ANGL. DEV. = -5.8 DEGREES REMARK 500 1 DG A 6 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 1 DG A 6 O4' - C1' - N9 ANGL. DEV. = 6.8 DEGREES REMARK 500 1 DG A 6 N1 - C2 - N3 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 DG A 6 C4 - C5 - N7 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 DG A 6 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DG A 6 C8 - N9 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 1 DG A 6 N9 - C4 - C5 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DG A 6 C6 - C5 - N7 ANGL. DEV. = 6.0 DEGREES REMARK 500 1 DG A 6 C5 - C6 - O6 ANGL. DEV. = -5.0 DEGREES REMARK 500 1 DA A 8 O4' - C4' - C3' ANGL. DEV. = 7.5 DEGREES REMARK 500 1 DA A 8 C4' - C3' - C2' ANGL. DEV. = -8.4 DEGREES REMARK 500 1 DA A 8 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 1 DA A 8 C6 - N1 - C2 ANGL. DEV. = -4.1 DEGREES REMARK 500 1 DA A 8 N1 - C2 - N3 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DA A 8 C4 - C5 - C6 ANGL. DEV. = -5.4 DEGREES REMARK 500 1 DA A 8 C5 - C6 - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DA A 8 C4 - C5 - N7 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 DA A 8 N9 - C4 - C5 ANGL. DEV. = -3.1 DEGREES REMARK 500 1 DA A 8 N1 - C6 - N6 ANGL. DEV. = -6.6 DEGREES REMARK 500 1 DC A 9 O4' - C1' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 1 DC A 9 C6 - N1 - C2 ANGL. DEV. = -6.2 DEGREES REMARK 500 1 DC A 9 N1 - C2 - N3 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 DC A 9 N1 - C2 - O2 ANGL. DEV. = 5.2 DEGREES REMARK 500 1 DC A 9 N3 - C2 - O2 ANGL. DEV. = -10.1 DEGREES REMARK 500 1 DC A 9 C5 - C4 - N4 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 DC A 10 O4' - C4' - C3' ANGL. DEV. = 4.2 DEGREES REMARK 500 1 DC A 10 C5 - C6 - N1 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 1331 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DC A 1 0.10 SIDE_CHAIN REMARK 500 1 DA A 4 0.07 SIDE_CHAIN REMARK 500 1 DG A 6 0.10 SIDE_CHAIN REMARK 500 1 DA A 8 0.09 SIDE_CHAIN REMARK 500 1 DG A 11 0.09 SIDE_CHAIN REMARK 500 1 DG A 12 0.12 SIDE_CHAIN REMARK 500 1 DG A 13 0.07 SIDE_CHAIN REMARK 500 1 DC B 15 0.06 SIDE_CHAIN REMARK 500 1 DG B 17 0.09 SIDE_CHAIN REMARK 500 1 DG B 18 0.08 SIDE_CHAIN REMARK 500 1 DA B 20 0.06 SIDE_CHAIN REMARK 500 1 DT B 22 0.08 SIDE_CHAIN REMARK 500 1 DT B 23 0.07 SIDE_CHAIN REMARK 500 1 DG B 25 0.07 SIDE_CHAIN REMARK 500 2 DA A 3 0.06 SIDE_CHAIN REMARK 500 2 DA A 4 0.08 SIDE_CHAIN REMARK 500 2 DA A 5 0.09 SIDE_CHAIN REMARK 500 2 DG A 6 0.09 SIDE_CHAIN REMARK 500 2 DA A 8 0.09 SIDE_CHAIN REMARK 500 2 DC A 9 0.07 SIDE_CHAIN REMARK 500 2 DG A 13 0.09 SIDE_CHAIN REMARK 500 2 DG B 17 0.07 SIDE_CHAIN REMARK 500 2 DG B 18 0.08 SIDE_CHAIN REMARK 500 2 DC B 21 0.09 SIDE_CHAIN REMARK 500 2 DT B 22 0.11 SIDE_CHAIN REMARK 500 2 DT B 23 0.10 SIDE_CHAIN REMARK 500 2 DG B 26 0.12 SIDE_CHAIN REMARK 500 3 DC A 1 0.08 SIDE_CHAIN REMARK 500 3 DC A 2 0.09 SIDE_CHAIN REMARK 500 3 DA A 4 0.08 SIDE_CHAIN REMARK 500 3 DC A 10 0.11 SIDE_CHAIN REMARK 500 3 DG A 11 0.11 SIDE_CHAIN REMARK 500 3 DC B 14 0.11 SIDE_CHAIN REMARK 500 3 DC B 16 0.10 SIDE_CHAIN REMARK 500 3 DG B 17 0.07 SIDE_CHAIN REMARK 500 3 DC B 21 0.07 SIDE_CHAIN REMARK 500 3 DT B 22 0.08 SIDE_CHAIN REMARK 500 3 DT B 23 0.13 SIDE_CHAIN REMARK 500 3 DG B 25 0.06 SIDE_CHAIN REMARK 500 4 DC A 1 0.06 SIDE_CHAIN REMARK 500 4 DA A 3 0.06 SIDE_CHAIN REMARK 500 4 DA A 5 0.08 SIDE_CHAIN REMARK 500 4 DA A 8 0.09 SIDE_CHAIN REMARK 500 4 DC A 10 0.07 SIDE_CHAIN REMARK 500 4 DG A 12 0.07 SIDE_CHAIN REMARK 500 4 DG A 13 0.10 SIDE_CHAIN REMARK 500 4 DC B 14 0.08 SIDE_CHAIN REMARK 500 4 DG B 17 0.07 SIDE_CHAIN REMARK 500 4 DG B 18 0.07 SIDE_CHAIN REMARK 500 4 DT B 19 0.09 SIDE_CHAIN REMARK 500 4 DA B 20 0.10 SIDE_CHAIN REMARK 500 4 DC B 21 0.07 SIDE_CHAIN REMARK 500 4 DT B 22 0.07 SIDE_CHAIN REMARK 500 4 DT B 23 0.07 SIDE_CHAIN REMARK 500 4 DG B 25 0.07 SIDE_CHAIN REMARK 500 4 DG B 26 0.12 SIDE_CHAIN REMARK 500 5 DC A 1 0.14 SIDE_CHAIN REMARK 500 5 DC A 2 0.10 SIDE_CHAIN REMARK 500 5 DA A 3 0.09 SIDE_CHAIN REMARK 500 5 DA A 4 0.09 SIDE_CHAIN REMARK 500 5 DG A 6 0.07 SIDE_CHAIN REMARK 500 5 DA A 8 0.11 SIDE_CHAIN REMARK 500 5 DC A 9 0.07 SIDE_CHAIN REMARK 500 5 DC A 10 0.09 SIDE_CHAIN REMARK 500 5 DG A 12 0.08 SIDE_CHAIN REMARK 500 5 DG A 13 0.06 SIDE_CHAIN REMARK 500 5 DC B 14 0.09 SIDE_CHAIN REMARK 500 5 DA B 20 0.06 SIDE_CHAIN REMARK 500 5 DT B 22 0.14 SIDE_CHAIN REMARK 500 5 DT B 24 0.10 SIDE_CHAIN REMARK 500 5 DG B 26 0.08 SIDE_CHAIN REMARK 500 6 DC A 2 0.08 SIDE_CHAIN REMARK 500 6 DA A 5 0.09 SIDE_CHAIN REMARK 500 6 DA A 8 0.11 SIDE_CHAIN REMARK 500 6 DC A 10 0.10 SIDE_CHAIN REMARK 500 6 DG A 11 0.09 SIDE_CHAIN REMARK 500 6 DG A 12 0.11 SIDE_CHAIN REMARK 500 6 DG A 13 0.08 SIDE_CHAIN REMARK 500 6 DC B 16 0.07 SIDE_CHAIN REMARK 500 6 DG B 17 0.10 SIDE_CHAIN REMARK 500 6 DG B 18 0.08 SIDE_CHAIN REMARK 500 6 DT B 19 0.13 SIDE_CHAIN REMARK 500 6 DA B 20 0.08 SIDE_CHAIN REMARK 500 6 DT B 22 0.10 SIDE_CHAIN REMARK 500 6 DT B 24 0.09 SIDE_CHAIN REMARK 500 6 DG B 26 0.11 SIDE_CHAIN REMARK 500 7 DC A 2 0.07 SIDE_CHAIN REMARK 500 7 DA A 3 0.06 SIDE_CHAIN REMARK 500 7 DG A 6 0.11 SIDE_CHAIN REMARK 500 7 DG A 12 0.09 SIDE_CHAIN REMARK 500 7 DG A 13 0.11 SIDE_CHAIN REMARK 500 7 DC B 14 0.13 SIDE_CHAIN REMARK 500 7 DC B 16 0.06 SIDE_CHAIN REMARK 500 7 DG B 17 0.08 SIDE_CHAIN REMARK 500 7 DG B 18 0.12 SIDE_CHAIN REMARK 500 7 DT B 19 0.08 SIDE_CHAIN REMARK 500 7 DT B 23 0.07 SIDE_CHAIN REMARK 500 7 DT B 24 0.08 SIDE_CHAIN REMARK 500 7 DG B 25 0.10 SIDE_CHAIN REMARK 500 7 DG B 26 0.10 SIDE_CHAIN REMARK 500 8 DC A 1 0.07 SIDE_CHAIN REMARK 500 8 DC A 2 0.05 SIDE_CHAIN REMARK 500 8 DA A 4 0.08 SIDE_CHAIN REMARK 500 8 DA A 5 0.08 SIDE_CHAIN REMARK 500 8 DA A 8 0.09 SIDE_CHAIN REMARK 500 8 DC A 9 0.08 SIDE_CHAIN REMARK 500 8 DG A 12 0.10 SIDE_CHAIN REMARK 500 8 DG A 13 0.11 SIDE_CHAIN REMARK 500 8 DG B 17 0.08 SIDE_CHAIN REMARK 500 8 DG B 18 0.05 SIDE_CHAIN REMARK 500 8 DC B 21 0.06 SIDE_CHAIN REMARK 500 8 DT B 22 0.10 SIDE_CHAIN REMARK 500 8 DT B 23 0.09 SIDE_CHAIN REMARK 500 8 DT B 24 0.13 SIDE_CHAIN REMARK 500 8 DG B 25 0.07 SIDE_CHAIN REMARK 500 8 DG B 26 0.10 SIDE_CHAIN REMARK 500 9 DA A 3 0.07 SIDE_CHAIN REMARK 500 9 DA A 4 0.11 SIDE_CHAIN REMARK 500 9 DA A 5 0.07 SIDE_CHAIN REMARK 500 9 DG A 6 0.12 SIDE_CHAIN REMARK 500 9 DA A 8 0.06 SIDE_CHAIN REMARK 500 9 DC A 10 0.10 SIDE_CHAIN REMARK 500 9 DG A 12 0.06 SIDE_CHAIN REMARK 500 9 DG B 17 0.08 SIDE_CHAIN REMARK 500 9 DT B 19 0.09 SIDE_CHAIN REMARK 500 9 DA B 20 0.08 SIDE_CHAIN REMARK 500 9 DC B 21 0.07 SIDE_CHAIN REMARK 500 9 DT B 23 0.06 SIDE_CHAIN REMARK 500 9 DT B 24 0.09 SIDE_CHAIN REMARK 500 9 DG B 25 0.07 SIDE_CHAIN REMARK 500 10 DC A 2 0.09 SIDE_CHAIN REMARK 500 10 DA A 3 0.11 SIDE_CHAIN REMARK 500 10 DG A 6 0.12 SIDE_CHAIN REMARK 500 10 DA A 8 0.08 SIDE_CHAIN REMARK 500 10 DC A 10 0.07 SIDE_CHAIN REMARK 500 10 DG A 11 0.14 SIDE_CHAIN REMARK 500 10 DG A 12 0.06 SIDE_CHAIN REMARK 500 10 DG A 13 0.09 SIDE_CHAIN REMARK 500 10 DC B 15 0.07 SIDE_CHAIN REMARK 500 10 DG B 18 0.13 SIDE_CHAIN REMARK 500 10 DA B 20 0.07 SIDE_CHAIN REMARK 500 10 DT B 23 0.08 SIDE_CHAIN REMARK 500 10 DT B 24 0.09 SIDE_CHAIN REMARK 500 10 DG B 25 0.14 SIDE_CHAIN REMARK 500 10 DG B 26 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 X4A IS AN ALPHA ANOMER. THEREFORE, C1' CENTER HAS CORRECT REMARK 600 CHIRALITY AT X4A.
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HPX RELATED DB: PDB
DBREF 2HOU A 1 13 PDB 2HOU 2HOU 1 13 DBREF 2HOU B 14 26 PDB 2HOU 2HOU 14 26
SEQRES 1 A 13 DC DC DA DA DA DG X4A DA DC DC DG DG DG SEQRES 1 B 13 DC DC DC DG DG DT DA DC DT DT DT DG DG
HET X4A A 7 21
HETNAM X4A [(2R,3S,5S)-2,3,5-TRIHYDROXYTETRAHYDROFURAN-2- HETNAM 2 X4A YL]METHYL DIHYDROGEN PHOSPHATE
FORMUL 1 X4A C5 H11 O8 P
LINK O3' DG A 6 P X4A A 7 1555 1555 1.64 LINK O3' X4A A 7 P DA A 8 1555 1555 1.64
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000