2HLH - Header Asymmetric Unit

HEADER TRANSFERASE 07-JUL-06 2HLH

TITLE CRYSTAL STRUCTURE OF FUCOSYLTRANSFERASE NODZ FROM BRADYRHIZOBIUM

COMPND MOL_ID: 1; COMPND 2 MOLECULE: NODULATION FUCOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.-; COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM SP.; SOURCE 3 ORGANISM_TAXID: 133505; SOURCE 4 STRAIN: WM9; SOURCE 5 GENE: NODZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS(DE3)RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A

KEYWDS GLYCOSYLTRANSFERASE, FUCOSYLTRANSFERASE, NODZ, NODULATION, KEYWDS 2 TRANSFERASE

EXPDTA X-RAY DIFFRACTION

AUTHOR K.BRZEZINSKI,T.STEPKOWSKI,S.PANJIKAR,G.BUJACZ,M.JASKOLSKI

REVDAT 5 13-JUL-11 2HLH 1 VERSN REVDAT 4 24-FEB-09 2HLH 1 VERSN REVDAT 3 04-MAR-08 2HLH 1 COMPND REVDAT 2 19-FEB-08 2HLH 1 JRNL REVDAT 1 17-JUL-07 2HLH 0

JRNL AUTH K.BRZEZINSKI,T.STEPKOWSKI,S.PANJIKAR,G.BUJACZ,M.JASKOLSKI JRNL TITL HIGH-RESOLUTION STRUCTURE OF NODZ FUCOSYLTRANSFERASE JRNL TITL 2 INVOLVED IN THE BIOSYNTHESIS OF THE NODULATION FACTOR. JRNL REF ACTA BIOCHIM.POL. V. 54 537 2007 JRNL REFN ISSN 0001-527X JRNL PMID 17762900

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.BRZEZINSKI,B.ROGOZINSKI,T.STEPKOWSKI,G.BUJACZ,M.JASKOLSKI REMARK 1 TITL CLONING, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC STUDIES OF BRADYRHIZOBIUM REMARK 1 TITL 3 FUCOSYLTRANSFERASE NODZ REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 344 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.QUESADA-VINCENS,R.FELLAY,T.NASIM,V.VIPREY,U.BURGER, REMARK 1 AUTH 2 J.C.PROME,W.J.BROUGHTON,S.JABBOURI REMARK 1 TITL RHIZOBIUM SP. STRAIN NGR234 NODZ PROTEIN IS A REMARK 1 TITL 2 FUCOSYLTRANSFERASE REMARK 1 REF J.BACTERIOL. V. 179 5087 1997 REMARK 1 REFN ISSN 0021-9193 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.QUINTO,A.H.WIJFJES,G.V.BLOEMBERG,L.BLOK-TIP, REMARK 1 AUTH 2 I.M.LOPEZ-LARA,B.J.LUGTENBERG,J.E.THOMAS-OATES,H.P.SPAINK REMARK 1 TITL BACTERIAL NODULATION PROTEIN NODZ IS A CHITIN REMARK 1 TITL 2 OLIGOSACCHARIDE FUCOSYLTRANSFERASE WHICH CAN ALSO RECOGNIZE REMARK 1 TITL 3 RELATED SUBSTRATES OF ANIMAL ORIGIN REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 94 4336 1997 REMARK 1 REFN ISSN 0027-8424

REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1085 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2115 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.1650 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2301 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 274 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : -0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.447 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2332 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3166 ; 1.599 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 5.975 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;29.644 ;21.835 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 373 ;12.597 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.907 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 348 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2574 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 470 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2245 ; NULL ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1151 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1421 ; NULL ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 190 ; 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.262 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.285 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.198 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1836 ; 1.339 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 570 ; 0.255 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2314 ; 1.704 ; 2.500 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1043 ; 3.929 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 852 ; 5.287 ;10.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8991 55.2890 3.4422 REMARK 3 T TENSOR REMARK 3 T11: -0.1919 T22: -0.1754 REMARK 3 T33: -0.1798 T12: -0.0132 REMARK 3 T13: -0.0123 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.1223 L22: 3.5427 REMARK 3 L33: 1.8586 L12: 0.0056 REMARK 3 L13: -0.1681 L23: 0.8551 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: -0.0071 S13: 0.0554 REMARK 3 S21: -0.0364 S22: -0.0298 S23: 0.2291 REMARK 3 S31: -0.0479 S32: -0.0497 S33: 0.0060 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4672 30.5691 4.1137 REMARK 3 T TENSOR REMARK 3 T11: -0.1671 T22: -0.1399 REMARK 3 T33: -0.1379 T12: -0.0138 REMARK 3 T13: -0.0041 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 2.6386 L22: 3.6308 REMARK 3 L33: 2.6310 L12: -1.8659 REMARK 3 L13: 0.9781 L23: -1.2081 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: -0.2230 S13: -0.0206 REMARK 3 S21: 0.1499 S22: 0.0143 S23: -0.1100 REMARK 3 S31: 0.0256 S32: -0.0349 S33: -0.0220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE REFINEMENT INCLUDED TLS PARAMETERS. REMARK 3 RESIDUES 179-192, 245-256, 305-308 AND 318-330 WERE NOT MODELED REMARK 3 DUE TO LACK OF ELECTRON DENSITY. THERE WAS NO OBSERVED ELECTRON REMARK 3 DENSITY FOR SIDE CHAIN ATOMS OF RESIDUES 3, 47, 48, 118, 119, REMARK 3 122, 153, 178, 193, 196, 218, 227, 244, 258, 259, 262, 283, 303, REMARK 3 304, 310. THOSE ATOMS WERE MODELED WITH ZERO OCCUPANCY AND B- REMARK 3 FACTOR OF 70 A2.

REMARK 4 REMARK 4 2HLH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-06. REMARK 100 THE RCSB ID CODE IS RCSB038482.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0200 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30716 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.700 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 58.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 11.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2HHC REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25M POTASSIUM DIHYDROGEN PHOSPHATE, REMARK 280 0.1M TRIS-HCL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K, PH 7.50

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.53333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.76667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.65000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.88333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.41667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.53333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 27.76667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 13.88333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 41.65000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 69.41667 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 405 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 608 LIES ON A SPECIAL POSITION.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 179 REMARK 465 ASN A 180 REMARK 465 GLY A 181 REMARK 465 GLU A 182 REMARK 465 ASP A 183 REMARK 465 ILE A 184 REMARK 465 MET A 185 REMARK 465 GLU A 186 REMARK 465 HIS A 187 REMARK 465 ALA A 188 REMARK 465 PRO A 189 REMARK 465 TYR A 190 REMARK 465 TRP A 191 REMARK 465 ALA A 192 REMARK 465 ARG A 245 REMARK 465 PHE A 246 REMARK 465 GLN A 247 REMARK 465 ALA A 248 REMARK 465 ASP A 249 REMARK 465 ARG A 250 REMARK 465 ALA A 251 REMARK 465 GLY A 252 REMARK 465 PRO A 253 REMARK 465 LEU A 254 REMARK 465 HIS A 255 REMARK 465 SER A 256 REMARK 465 LEU A 305 REMARK 465 SER A 306 REMARK 465 ASN A 307 REMARK 465 PRO A 308 REMARK 465 TYR A 318 REMARK 465 GLU A 319 REMARK 465 HIS A 320 REMARK 465 PHE A 321 REMARK 465 ALA A 322 REMARK 465 ALA A 323 REMARK 465 SER A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330

REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 3 CG CD CE NZ REMARK 480 GLU A 47 CG CD OE1 OE2 REMARK 480 GLN A 48 CD OE1 NE2 REMARK 480 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 119 CG CD OE1 OE2 REMARK 480 GLU A 122 CD OE1 OE2 REMARK 480 GLU A 153 CD OE1 OE2 REMARK 480 HIS A 178 CG ND1 CD2 CE1 NE2 REMARK 480 ASP A 193 CB CG OD1 OD2 REMARK 480 LEU A 196 CG CD1 CD2 REMARK 480 LYS A 218 CE NZ REMARK 480 GLN A 227 CG CD OE1 NE2 REMARK 480 LYS A 244 CE NZ REMARK 480 GLU A 258 CB CG CD OE1 OE2 REMARK 480 MET A 259 CG SD CE REMARK 480 GLU A 262 CG CD OE1 OE2 REMARK 480 PHE A 283 CG CD1 CD2 CE1 CE2 CZ REMARK 480 PHE A 303 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 ASP A 304 CG OD1 OD2 REMARK 480 HIS A 310 CG ND1 CD2 CE1 NE2

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 5 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 95 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 155 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 13 -151.54 -106.48 REMARK 500 ASP A 72 -159.29 -135.86 REMARK 500 REMARK 500 REMARK: NULL

REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 499 DISTANCE = 5.40 ANGSTROMS REMARK 525 HOH A 507 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A 510 DISTANCE = 5.74 ANGSTROMS REMARK 525 HOH A 555 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A 572 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A 600 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH A 607 DISTANCE = 6.04 ANGSTROMS

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 334

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HHC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUCOSYLTRANSFERASE NODZ FROM REMARK 900 BRADYRHIZOBIUM

DBREF 2HLH A 1 324 UNP Q9AQ17 Q9AQ17_BRASW 1 324

SEQADV 2HLH HIS A 325 UNP Q9AQ17 EXPRESSION TAG SEQADV 2HLH HIS A 326 UNP Q9AQ17 EXPRESSION TAG SEQADV 2HLH HIS A 327 UNP Q9AQ17 EXPRESSION TAG SEQADV 2HLH HIS A 328 UNP Q9AQ17 EXPRESSION TAG SEQADV 2HLH HIS A 329 UNP Q9AQ17 EXPRESSION TAG SEQADV 2HLH HIS A 330 UNP Q9AQ17 EXPRESSION TAG

SEQRES 1 A 330 MET THR LYS GLU ARG PHE VAL ILE SER ARG ARG ARG THR SEQRES 2 A 330 GLY PHE GLY ASP CYS LEU TRP SER LEU ALA SER ALA TRP SEQRES 3 A 330 SER TYR ALA GLN ARG THR GLY ARG THR LEU VAL ILE ASP SEQRES 4 A 330 TRP ARG GLY SER CYS TYR VAL GLU GLN PRO PHE SER ASN SEQRES 5 A 330 ALA PHE PRO ALA PHE PHE GLU PRO VAL GLU ASP ILE ALA SEQRES 6 A 330 GLY VAL PRO VAL ILE CYS ASP ASP ARG VAL ASN GLN LEU SEQRES 7 A 330 SER PHE PRO GLY PRO PHE PHE PRO ARG TRP TRP ASN ARG SEQRES 8 A 330 PRO SER ILE ASP CYS ILE ASN ARG PRO ASP GLU GLN ILE SEQRES 9 A 330 PHE ARG GLU ARG ASP GLU LEU THR GLU LEU PHE GLN ALA SEQRES 10 A 330 ARG GLU ASP SER GLU ALA ASN THR ILE VAL CYS ASP ALA SEQRES 11 A 330 CYS LEU MET TRP ARG CYS SER GLU GLU ALA GLU ARG LEU SEQRES 12 A 330 ILE PHE ARG ASN ILE LYS LEU ARG SER GLU ILE ARG ALA SEQRES 13 A 330 ARG ILE ASP ALA LEU TYR GLU GLU HIS PHE SER GLY HIS SEQRES 14 A 330 SER ILE ILE GLY VAL HIS VAL ARG HIS GLY ASN GLY GLU SEQRES 15 A 330 ASP ILE MET GLU HIS ALA PRO TYR TRP ALA ASP SER GLU SEQRES 16 A 330 LEU ALA LEU HIS GLN VAL CYS MET ALA ILE ARG LYS ALA SEQRES 17 A 330 LYS ALA LEU SER TYR PRO LYS PRO VAL LYS VAL PHE LEU SEQRES 18 A 330 CYS THR ASP SER ALA GLN VAL LEU ASP GLN VAL SER GLY SEQRES 19 A 330 LEU PHE PRO ASP VAL PHE ALA VAL PRO LYS ARG PHE GLN SEQRES 20 A 330 ALA ASP ARG ALA GLY PRO LEU HIS SER ALA GLU MET GLY SEQRES 21 A 330 ILE GLU GLY GLY ALA SER ALA LEU ILE ASP MET TYR LEU SEQRES 22 A 330 LEU ALA ARG CYS ALA THR VAL ILE ARG PHE PRO PRO THR SEQRES 23 A 330 SER ALA PHE THR ARG TYR ALA ARG LEU LEU VAL PRO ARG SEQRES 24 A 330 ILE ILE GLU PHE ASP LEU SER ASN PRO GLY HIS LEU THR SEQRES 25 A 330 MET ILE ASP ASN PRO TYR GLU HIS PHE ALA ALA SER HIS SEQRES 26 A 330 HIS HIS HIS HIS HIS

HET PO4 A 331 5 HET PO4 A 332 5 HET PO4 A 333 5 HET PO4 A 334 5

HETNAM PO4 PHOSPHATE ION

FORMUL 2 PO4 4(O4 P 3-) FORMUL 6 HOH *274(H2 O)

HELIX 1 1 GLY A 14 GLY A 33 1 20 HELIX 2 2 ALA A 53 PHE A 58 1 6 HELIX 3 3 ASP A 72 GLN A 77 5 6 HELIX 4 4 PRO A 86 ARG A 91 5 6 HELIX 5 5 PRO A 92 ILE A 97 5 6 HELIX 6 6 PRO A 100 ALA A 117 1 18 HELIX 7 7 SER A 137 ILE A 148 1 12 HELIX 8 8 ARG A 151 PHE A 166 1 16 HELIX 9 9 ASP A 193 LEU A 211 1 19 HELIX 10 10 SER A 225 PHE A 236 1 12 HELIX 11 11 ALA A 257 ALA A 275 1 19 HELIX 12 12 SER A 287 PHE A 289 5 3 HELIX 13 13 THR A 290 VAL A 297 1 8

SHEET 1 A 6 ASP A 63 ILE A 64 0 SHEET 2 A 6 VAL A 67 ILE A 70 -1 O VAL A 67 N ILE A 64 SHEET 3 A 6 THR A 35 ASP A 39 1 N ILE A 38 O ILE A 70 SHEET 4 A 6 PHE A 6 ARG A 10 1 N SER A 9 O VAL A 37 SHEET 5 A 6 THR A 125 CYS A 128 1 O ILE A 126 N ILE A 8 SHEET 6 A 6 PHE A 84 PHE A 85 1 N PHE A 85 O VAL A 127 SHEET 1 B 6 VAL A 239 PHE A 240 0 SHEET 2 B 6 VAL A 217 THR A 223 1 N VAL A 219 O PHE A 240 SHEET 3 B 6 SER A 170 VAL A 176 1 N VAL A 174 O CYS A 222 SHEET 4 B 6 THR A 279 PHE A 283 1 O THR A 279 N GLY A 173 SHEET 5 B 6 ARG A 299 PHE A 303 1 O ILE A 301 N VAL A 280 SHEET 6 B 6 LEU A 311 ASP A 315 -1 O ILE A 314 N ILE A 300

CISPEP 1 GLY A 82 PRO A 83 0 -6.33 CISPEP 2 PHE A 85 PRO A 86 0 -2.83 CISPEP 3 PHE A 283 PRO A 284 0 4.66 CISPEP 4 ASN A 316 PRO A 317 0 -6.32

SITE 1 AC1 9 PRO A 86 ARG A 87 TRP A 88 GLN A 103 SITE 2 AC1 9 ARG A 106 GLU A 110 HOH A 427 HOH A 436 SITE 3 AC1 9 HOH A 516 SITE 1 AC2 4 GLU A 59 ARG A 151 SER A 152 HOH A 602 SITE 1 AC3 10 GLY A 14 PHE A 15 GLY A 16 ASP A 17 SITE 2 AC3 10 ARG A 177 SER A 287 ALA A 288 PHE A 289 SITE 3 AC3 10 HOH A 366 HOH A 540 SITE 1 AC4 4 HIS A 175 ARG A 177 THR A 223 ASP A 224

CRYST1 130.100 130.100 83.300 90.00 90.00 120.00 P 65 2 2 12

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.007686 0.004438 0.000000 0.00000

SCALE2 0.000000 0.008875 0.000000 0.00000

SCALE3 0.000000 0.000000 0.012005 0.00000