10 20 30 40 50 60 70 80 2HHC - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 28-JUN-06 2HHC
TITLE CRYSTAL STRUCTURE OF FUCOSYLTRANSFERASE NODZ FROM BRADYRHIZOBIUM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NODULATION FUCOSYLTRANSFERASE NODZ; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NODZ; COMPND 5 EC: 2.4.1.-; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM SP.; SOURCE 3 ORGANISM_TAXID: 133505; SOURCE 4 STRAIN: WM9; SOURCE 5 GENE: NODZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS(DE3)RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A
KEYWDS GLYCOSYLTRANSFERASE, FUCOSYLTRANSFERASE, NODZ, NODULATION, KEYWDS 2 TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR K.BRZEZINSKI,T.STEPKOWSKI,S.PANJIKAR,G.BUJACZ,M.JASKOLSKI
REVDAT 5 13-JUL-11 2HHC 1 VERSN REVDAT 4 24-FEB-09 2HHC 1 VERSN REVDAT 3 11-MAR-08 2HHC 1 COMPND REVDAT 2 26-FEB-08 2HHC 1 JRNL REVDAT 1 17-JUL-07 2HHC 0
JRNL AUTH K.BRZEZINSKI,T.STEPKOWSKI,S.PANJIKAR,G.BUJACZ,M.JASKOLSKI JRNL TITL HIGH-RESOLUTION STRUCTURE OF NODZ FUCOSYLTRANSFERASE JRNL TITL 2 INVOLVED IN THE BIOSYNTHESIS OF THE NODULATION FACTOR. JRNL REF ACTA BIOCHIM.POL. V. 54 537 2007 JRNL REFN ISSN 0001-527X JRNL PMID 17762900
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.BRZEZINSKI,B.ROGOZINSKI,T.STEPKOWSKI,G.BUJACZ,M.JASKOLSKI REMARK 1 TITL CLONING, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC STUDIES OF BRADYRHIZOBIUM REMARK 1 TITL 3 FUCOSYLTRANSFERASE NODZ REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 344 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 14747720 REMARK 1 DOI 10.1107/S0907444903027227 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.QUESADA-VINCENS,R.FELLAY,T.NASIM,V.VIPREY,U.BURGER, REMARK 1 AUTH 2 J.C.PROME,W.J.BROUGHTON,S.JABBOURI REMARK 1 TITL RHIZOBIUM SP. STRAIN NGR234 NODZ PROTEIN IS A REMARK 1 TITL 2 FUCOSYLTRANSFERASE REMARK 1 REF J.BACTERIOL. V. 179 5087 1997 REMARK 1 REFN ISSN 0021-9193 REMARK 1 PMID 9260950 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.QUINTO,A.H.WIJFJES,G.V.BLOEMBERG,L.BLOK-TIP, REMARK 1 AUTH 2 I.M.LOPEZ-LARA,B.J.LUGTENBERG,J.E.THOMAS-OATES,H.P.SPAINK REMARK 1 TITL BACTERIAL NODULATION PROTEIN NODZ IS A CHITIN REMARK 1 TITL 2 OLIGOSACCHARIDE FUCOSYLTRANSFERASE WHICH CAN ALSO RECOGNIZE REMARK 1 TITL 3 RELATED SUBSTRATES OF ANIMAL ORIGIN REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 94 4336 1997 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 9113990 REMARK 1 DOI 10.1073/PNAS.94.9.4336
REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 62469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.031 REMARK 3 FREE R VALUE TEST SET COUNT : 1270 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2341 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 310 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.04000 REMARK 3 B22 (A**2) : -1.04000 REMARK 3 B33 (A**2) : 1.57000 REMARK 3 B12 (A**2) : -0.52000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.551 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2440 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3312 ; 1.705 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 5.523 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;31.293 ;22.066 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 399 ;12.950 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;20.705 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 362 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2669 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 480 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2311 ; 0.205 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1191 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1464 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 186 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.259 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1879 ; 1.284 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 577 ; 0.321 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2386 ; 1.508 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1120 ; 2.672 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 926 ; 3.786 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4191 54.2198 2.2759 REMARK 3 T TENSOR REMARK 3 T11: -0.1811 T22: -0.1363 REMARK 3 T33: -0.1768 T12: -0.0041 REMARK 3 T13: -0.0283 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.1053 L22: 3.0289 REMARK 3 L33: 1.1696 L12: -0.1753 REMARK 3 L13: 0.0993 L23: 0.6854 REMARK 3 S TENSOR REMARK 3 S11: 0.0335 S12: -0.0774 S13: 0.0828 REMARK 3 S21: 0.0389 S22: -0.0641 S23: 0.2105 REMARK 3 S31: 0.0033 S32: -0.0668 S33: 0.0306 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6127 30.4565 2.5266 REMARK 3 T TENSOR REMARK 3 T11: -0.1317 T22: -0.1379 REMARK 3 T33: -0.1607 T12: -0.0018 REMARK 3 T13: -0.0378 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.5634 L22: 3.3149 REMARK 3 L33: 2.3577 L12: -2.0122 REMARK 3 L13: 0.7974 L23: -1.4538 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: -0.1876 S13: -0.1107 REMARK 3 S21: 0.0747 S22: 0.0472 S23: 0.0157 REMARK 3 S31: 0.0965 S32: -0.0734 S33: -0.0572 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE REFINEMENT INCLUDED TLS PARAMETERS. REMARK 3 RESIDUES 179-190, 245-255, 305-306 AND 318-330 WERE NOT MODELED REMARK 3 DUE TO LACK OF ELECTRON DENSITY. THERE WAS NO OBSERVED ELECTRON REMARK 3 DENSITY FOR SIDE CHAIN ATOMS OF RESIDUES 118, 119, 149, 177, 178, REMARK 3 191, 192, 193, 215, 218, 227, 244, 256, 257, 258, 259, 304, 307, REMARK 3 310. THOSE ATOMS WERE MODELED WITH ZERO OCCUPANCY AND B-FACTOR OF REMARK 3 70 A2.
REMARK 4 REMARK 4 2HHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB038348.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8128 REMARK 200 MONOCHROMATOR : SI SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64545 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 24.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 72.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.80 REMARK 200 R MERGE FOR SHELL (I) : 0.80200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25M POTASSIUM DIHYDROGEN PHOSPHATE, REMARK 280 0.1M TRIS-HCL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.06667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.03333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.05000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.01667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.08333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.06667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 32.03333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 16.01667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 48.05000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 80.08333 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2006 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 179 REMARK 465 ASN A 180 REMARK 465 GLY A 181 REMARK 465 GLU A 182 REMARK 465 ASP A 183 REMARK 465 ILE A 184 REMARK 465 MET A 185 REMARK 465 GLU A 186 REMARK 465 HIS A 187 REMARK 465 ALA A 188 REMARK 465 PRO A 189 REMARK 465 TYR A 190 REMARK 465 ARG A 245 REMARK 465 PHE A 246 REMARK 465 GLN A 247 REMARK 465 ALA A 248 REMARK 465 ASP A 249 REMARK 465 ARG A 250 REMARK 465 ALA A 251 REMARK 465 GLY A 252 REMARK 465 PRO A 253 REMARK 465 LEU A 254 REMARK 465 HIS A 255 REMARK 465 LEU A 305 REMARK 465 SER A 306 REMARK 465 TYR A 318 REMARK 465 GLU A 319 REMARK 465 HIS A 320 REMARK 465 PHE A 321 REMARK 465 ALA A 322 REMARK 465 ALA A 323 REMARK 465 SER A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 119 CG CD OE1 OE2 REMARK 480 LYS A 149 CE NZ REMARK 480 ARG A 177 CD NE CZ NH1 NH2 REMARK 480 HIS A 178 CB CG ND1 CD2 CE1 NE2 REMARK 480 TRP A 191 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 480 TRP A 191 CZ2 CZ3 CH2 REMARK 480 ALA A 192 CB REMARK 480 ASP A 193 CG OD1 OD2 REMARK 480 LYS A 215 CE NZ REMARK 480 LYS A 218 CE NZ REMARK 480 GLN A 227 CG CD OE1 NE2 REMARK 480 LYS A 244 CD CE NZ REMARK 480 SER A 256 N CA CB OG REMARK 480 ALA A 257 CB REMARK 480 GLU A 258 CG CD OE1 OE2 REMARK 480 MET A 259 CB CG SD CE REMARK 480 ASP A 304 CB CG OD1 OD2 REMARK 480 ASN A 307 CB CG OD1 ND2 REMARK 480 HIS A 310 CG ND1 CD2 CE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 12 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 95 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 106 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP A 129 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 13 -151.32 -103.62 REMARK 500 ASP A 72 -157.83 -136.60 REMARK 500 HIS A 165 -36.56 -132.91 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2201 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A2216 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A2256 DISTANCE = 5.38 ANGSTROMS REMARK 525 HOH A2282 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH A2283 DISTANCE = 7.57 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 2001
DBREF 2HHC A 1 324 UNP Q9AQ17 Q9AQ17_BRASW 1 324
SEQADV 2HHC HIS A 325 UNP Q9AQ17 EXPRESSION TAG SEQADV 2HHC HIS A 326 UNP Q9AQ17 EXPRESSION TAG SEQADV 2HHC HIS A 327 UNP Q9AQ17 EXPRESSION TAG SEQADV 2HHC HIS A 328 UNP Q9AQ17 EXPRESSION TAG SEQADV 2HHC HIS A 329 UNP Q9AQ17 EXPRESSION TAG SEQADV 2HHC HIS A 330 UNP Q9AQ17 EXPRESSION TAG
SEQRES 1 A 330 MET THR LYS GLU ARG PHE VAL ILE SER ARG ARG ARG THR SEQRES 2 A 330 GLY PHE GLY ASP CYS LEU TRP SER LEU ALA SER ALA TRP SEQRES 3 A 330 SER TYR ALA GLN ARG THR GLY ARG THR LEU VAL ILE ASP SEQRES 4 A 330 TRP ARG GLY SER CYS TYR VAL GLU GLN PRO PHE SER ASN SEQRES 5 A 330 ALA PHE PRO ALA PHE PHE GLU PRO VAL GLU ASP ILE ALA SEQRES 6 A 330 GLY VAL PRO VAL ILE CYS ASP ASP ARG VAL ASN GLN LEU SEQRES 7 A 330 SER PHE PRO GLY PRO PHE PHE PRO ARG TRP TRP ASN ARG SEQRES 8 A 330 PRO SER ILE ASP CYS ILE ASN ARG PRO ASP GLU GLN ILE SEQRES 9 A 330 PHE ARG GLU ARG ASP GLU LEU THR GLU LEU PHE GLN ALA SEQRES 10 A 330 ARG GLU ASP SER GLU ALA ASN THR ILE VAL CYS ASP ALA SEQRES 11 A 330 CYS LEU MET TRP ARG CYS SER GLU GLU ALA GLU ARG LEU SEQRES 12 A 330 ILE PHE ARG ASN ILE LYS LEU ARG SER GLU ILE ARG ALA SEQRES 13 A 330 ARG ILE ASP ALA LEU TYR GLU GLU HIS PHE SER GLY HIS SEQRES 14 A 330 SER ILE ILE GLY VAL HIS VAL ARG HIS GLY ASN GLY GLU SEQRES 15 A 330 ASP ILE MET GLU HIS ALA PRO TYR TRP ALA ASP SER GLU SEQRES 16 A 330 LEU ALA LEU HIS GLN VAL CYS MET ALA ILE ARG LYS ALA SEQRES 17 A 330 LYS ALA LEU SER TYR PRO LYS PRO VAL LYS VAL PHE LEU SEQRES 18 A 330 CYS THR ASP SER ALA GLN VAL LEU ASP GLN VAL SER GLY SEQRES 19 A 330 LEU PHE PRO ASP VAL PHE ALA VAL PRO LYS ARG PHE GLN SEQRES 20 A 330 ALA ASP ARG ALA GLY PRO LEU HIS SER ALA GLU MET GLY SEQRES 21 A 330 ILE GLU GLY GLY ALA SER ALA LEU ILE ASP MET TYR LEU SEQRES 22 A 330 LEU ALA ARG CYS ALA THR VAL ILE ARG PHE PRO PRO THR SEQRES 23 A 330 SER ALA PHE THR ARG TYR ALA ARG LEU LEU VAL PRO ARG SEQRES 24 A 330 ILE ILE GLU PHE ASP LEU SER ASN PRO GLY HIS LEU THR SEQRES 25 A 330 MET ILE ASP ASN PRO TYR GLU HIS PHE ALA ALA SER HIS SEQRES 26 A 330 HIS HIS HIS HIS HIS
HET PO4 A1001 5 HET PO4 A1002 5 HET PO4 A1003 5 HET TRS A2001 8
HETNAM PO4 PHOSPHATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
HETSYN TRS TRIS BUFFER
FORMUL 2 PO4 3(O4 P 3-) FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 6 HOH *310(H2 O)
HELIX 1 1 GLY A 14 GLY A 33 1 20 HELIX 2 2 ALA A 53 PHE A 58 1 6 HELIX 3 3 ASP A 72 GLN A 77 5 6 HELIX 4 4 PRO A 86 ARG A 91 5 6 HELIX 5 5 PRO A 92 ILE A 97 5 6 HELIX 6 6 PRO A 100 ALA A 117 1 18 HELIX 7 7 SER A 137 ILE A 148 1 12 HELIX 8 8 ARG A 151 PHE A 166 1 16 HELIX 9 9 TRP A 191 ALA A 210 1 20 HELIX 10 10 SER A 225 PHE A 236 1 12 HELIX 11 11 SER A 256 ALA A 275 1 20 HELIX 12 12 SER A 287 PHE A 289 5 3 HELIX 13 13 THR A 290 VAL A 297 1 8
SHEET 1 A 6 ASP A 63 ILE A 64 0 SHEET 2 A 6 VAL A 67 ILE A 70 -1 O VAL A 67 N ILE A 64 SHEET 3 A 6 THR A 35 ASP A 39 1 N ILE A 38 O ILE A 70 SHEET 4 A 6 PHE A 6 ARG A 10 1 N SER A 9 O VAL A 37 SHEET 5 A 6 THR A 125 CYS A 128 1 O ILE A 126 N ILE A 8 SHEET 6 A 6 PHE A 84 PHE A 85 1 N PHE A 85 O VAL A 127 SHEET 1 B 6 VAL A 239 PHE A 240 0 SHEET 2 B 6 VAL A 217 THR A 223 1 N LEU A 221 O PHE A 240 SHEET 3 B 6 SER A 170 VAL A 176 1 N VAL A 174 O CYS A 222 SHEET 4 B 6 THR A 279 PHE A 283 1 O ILE A 281 N GLY A 173 SHEET 5 B 6 ARG A 299 PHE A 303 1 O ILE A 301 N VAL A 280 SHEET 6 B 6 LEU A 311 ASP A 315 -1 O THR A 312 N GLU A 302
CISPEP 1 GLY A 82 PRO A 83 0 -3.04 CISPEP 2 PHE A 85 PRO A 86 0 -3.41 CISPEP 3 PHE A 283 PRO A 284 0 7.05 CISPEP 4 ASN A 316 PRO A 317 0 5.30
SITE 1 AC1 7 PRO A 86 ARG A 87 TRP A 88 ARG A 91 SITE 2 AC1 7 GLN A 103 ARG A 106 GLU A 110 SITE 1 AC2 5 PHE A 6 SER A 79 TRS A2001 HOH A2004 SITE 2 AC2 5 HOH A2005 SITE 1 AC3 5 GLU A 59 ARG A 151 SER A 152 GLU A 153 SITE 2 AC3 5 HOH A2254 SITE 1 AC4 9 LYS A 3 GLU A 4 PHE A 6 ILE A 70 SITE 2 AC4 9 LEU A 78 PO4 A1002 HOH A2133 HOH A2144 SITE 3 AC4 9 HOH A2262
CRYST1 124.200 124.200 96.100 90.00 90.00 120.00 P 65 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008052 0.004649 0.000000 0.00000
SCALE2 0.000000 0.009297 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010406 0.00000