10 20 30 40 50 60 70 80 2HGC - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 26-JUN-06 2HGC
TITLE SOLUTION NMR STRUCTURE OF THE YJCQ PROTEIN FROM BACILLUS TITLE 2 SUBTILIS. NORTHEAST STRUCTURAL GENOMICS TARGET SR346.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: YJCQ PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YJCQ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SR346_21.4
KEYWDS SR346, NMR STRUCTURE, AUTOSTRUCTURE, NESG, PSI-2, NORTHEAST KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, STRUCTURAL GENOMICS, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR P.ROSSI,J.R.CORT,C.K.HO,H.JANJUA,K.CUNNINGHAM,L.-C.MA, AUTHOR 2 R.XIAO,J.LIU,M.BARAN,G.V.T.SWAPNA,T.B.ACTON,B.ROST, AUTHOR 3 M.A.KENNEDY,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (NESG)
REVDAT 3 24-FEB-09 2HGC 1 VERSN REVDAT 2 29-AUG-06 2HGC 1 AUTHOR REVDAT 1 22-AUG-06 2HGC 0
JRNL AUTH P.ROSSI,J.R.CORT,C.K.HO,H.JANJUA,K.CUNNINGHAM, JRNL AUTH 2 L.-C.MA,R.XIAO,J.LIU,M.BARAN,G.V.T.SWAPNA, JRNL AUTH 3 T.B.ACTON,B.ROST,M.A.KENNEDY,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF THE YJCQ PROTEIN FROM JRNL TITL 2 BACILLUS SUBTILIS. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 TARGET SR346. (CASP TARGET) JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 2.11.2, PSVS 1.3, PROCHECK NMR 3.51, REMARK 3 MOLPROBITY 3.01 REMARK 3 AUTHORS : CLORE (X-PLOR), BHATTACHARYA, MONTELIONE (PSVS) REMARK 3 , LASKOWSKI, MACARTHUR (PROCHECK NMR), LOVELL, REMARK 3 RICHARDSON ET. AL. (MOLPROBITY) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2HGC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB038316.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 293 REMARK 210 PH : 5.5; 5.5 REMARK 210 IONIC STRENGTH : 0.1 M NACL; 0.1 M NACL REMARK 210 PRESSURE : ATMOSPHERIC ATM; ATMOSPHERIC REMARK 210 ATM REMARK 210 SAMPLE CONTENTS : 0.85 MM U-13C,15N SR346, 5MM REMARK 210 CACL2, 100MM NACL, 20MM REMARK 210 NH4OAC, 10MM DTT, 0.02% NAN3; REMARK 210 0.77 MM 5%-13C,U-15N SR346, REMARK 210 5MM CACL2, 100MM NACL, 20MM REMARK 210 NH4OAC, 10MM DTT, 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, HCCH- REMARK 210 TOCSY, HCCH-COSY,CCCONH-TOCSY, REMARK 210 3D-HNCACB, HNCOCACB, HBHACONH, REMARK 210 HNCO, C13_HSQC_NOCT REMARK 210 STEREOSPECIFIC VL ME ASSIGN., REMARK 210 HET-NOE, T1/T1RHO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE, INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, XWINNMR 3.5, DYANA REMARK 210 1.2, NMRPIPE 2005, SPARKY REMARK 210 3.11, AUTOASSIGN 2.2.1, REMARK 210 AUTOSTRUCTURE 2.1.1, HYPER REMARK 210 2.1, PDBSTAT 4.1 REMARK 210 METHOD USED : NOESY ASSIGNMENTS MADE WITH REMARK 210 ITERATIVE METHOD USING CS, 3J, REMARK 210 HYPER (DIHEDRAL), AND DYANA REMARK 210 FOR SIMULATED ANNEALING MD. REMARK 210 CONVERGED STRUCTURES ARE REMARK 210 FURTHER REFINED USING NIH- REMARK 210 XPLOR FOLLOWED BY CNS IN REMARK 210 EXPLICIT WATER SHELL (NIELGES) REMARK 210 . FULL LENGHT SEQUENCE WAS REMARK 210 CARRIED THROUGH THE REFINEMENT REMARK 210 PROTOCOL, THE DISORDERED REMARK 210 REGIONS AND HEXHIS TAG ARE NOT REMARK 210 REPORTED. STRUCTURE BASED ON REMARK 210 595 CONSTRAINTS, 249 LONG REMARK 210 RANGE, 163 DIHEDRAL REMARK 210 CONSTRAINTS AND 36 H-BOND REMARK 210 CONSTRAINTS. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURE DETERMINED BY TRIPLE RESONANCE NMR REMARK 210 SPECTROSCOPY. MONOMER IN SOLUTION BY NMR TC = 8.6 +/- 0.1 NS REMARK 210 (1D T1/T1RHO +/- FIT STD). CIS PEPTIDE RES. 19T-20P. STRUCTURE REMARK 210 DETERMINED BY TRIPLE RESONANCE NMR SPECTROSCOPY. COORDINATES REMARK 210 REPORTED FROM RESIDUE 5 TO 82 SECTION BASED ON ORDER REMARK 210 PARAMETER. AUTOASSIGN USED FOR BACKBONE ASSIGNMENT, MANUALLY REMARK 210 COMPLETED SIDECHAIN. 13C AND 15N NOESY WERE ASSIGNED WITH REMARK 210 AUTOSTRUCTURE. DIHEDRAL ANGLE RESTRAINTS DETERMINED BY HYPER . REMARK 210 ASSIGNMENT STATS (EXCLUDING C-TERM TAG): BACKBONE 84.6%, REMARK 210 SIDECHAIN 74.7%, AROMATIC (SC) 89.36%, VL METHYL REMARK 210 STEREOSPECIFIC 100%, UNAMBIGUOUS SIDECHAIN NH2 85.7%. REMARK 210 STRUCTURE QUALITY FACTOR PSVS 1.3: ORDERED RESIDUES RANGES REMARK 210 ALPHA HELIX (7-17, 23-26,30-43, 67-76), B-STRAND (46-47, 64- REMARK 210 65, 50-51, 56-57) [S(PHI)+S(PSI)]>1.8. RMSD 0.6 BB, 1.2 ALL REMARK 210 HEAVY ATOMS. RAMA: 95.8% MOST FAV, 3.7% ADDTL. ALL., 0.3 GEN. REMARK 210 ALL.,0.3% DISALL. PROCHECK (PSI-PHI): 0.03/0.43 (RAW/Z), REMARK 210 PROCHECK (ALL): 1.18/-1.18 (RAW/Z), MOLPROBITY CLASH: 27.67/- REMARK 210 3.22 (RAW/Z). RPF SCORES ALL ASSIGNED RESIDUES (FIT OF NOESY REMARK 210 PEAKLISTS TO STRUCTURE): RECALL: 0.896, PRECISION: 0.90, F- REMARK 210 MEASURE: 0.898, DP-SCORE: 0.70. MONOMER BY LIGHT SCATTERING.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 4 REMARK 465 TYR A 83 REMARK 465 LYS A 84 REMARK 465 THR A 85 REMARK 465 ILE A 86 REMARK 465 LYS A 87 REMARK 465 GLU A 88 REMARK 465 ILE A 89 REMARK 465 LYS A 90 REMARK 465 ASP A 91 REMARK 465 TRP A 92 REMARK 465 ILE A 93 REMARK 465 LYS A 94 REMARK 465 LEU A 95 REMARK 465 GLU A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 465 HIS A 102
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 18 -1.78 74.20 REMARK 500 1 THR A 19 153.60 59.55 REMARK 500 1 SER A 52 -88.51 -121.80 REMARK 500 1 ASP A 54 -33.32 -169.17 REMARK 500 1 SER A 80 93.25 -68.90 REMARK 500 2 ASN A 18 -90.09 70.25 REMARK 500 2 THR A 19 164.84 173.01 REMARK 500 2 THR A 78 -145.04 -81.68 REMARK 500 2 TRP A 79 146.83 79.99 REMARK 500 3 ASN A 18 -90.45 68.89 REMARK 500 3 THR A 19 159.33 177.19 REMARK 500 3 SER A 52 -52.99 -136.69 REMARK 500 3 ASP A 54 -10.02 82.15 REMARK 500 3 TRP A 79 -148.57 44.57 REMARK 500 4 ASN A 18 -20.20 76.66 REMARK 500 4 THR A 19 163.41 61.95 REMARK 500 4 SER A 52 51.85 -116.21 REMARK 500 4 ASP A 54 -69.64 -167.07 REMARK 500 4 LYS A 81 -150.65 -76.57 REMARK 500 5 THR A 19 163.27 56.84 REMARK 500 5 ASP A 54 -54.00 -123.32 REMARK 500 5 SER A 80 83.28 53.40 REMARK 500 6 THR A 19 166.65 55.09 REMARK 500 6 SER A 52 30.36 -98.14 REMARK 500 6 ASP A 53 -46.81 72.00 REMARK 500 6 ASP A 54 -75.71 -66.05 REMARK 500 6 TYR A 59 -166.44 -116.06 REMARK 500 6 THR A 78 -81.96 -91.33 REMARK 500 6 TRP A 79 80.96 45.59 REMARK 500 6 SER A 80 -34.84 70.26 REMARK 500 7 THR A 19 164.42 55.48 REMARK 500 7 ASP A 53 -76.03 64.85 REMARK 500 7 LEU A 58 144.75 68.20 REMARK 500 7 LEU A 61 41.84 -146.57 REMARK 500 7 THR A 78 -84.92 -64.96 REMARK 500 7 TRP A 79 175.20 66.92 REMARK 500 8 ASN A 18 -17.24 75.38 REMARK 500 8 THR A 19 156.92 58.62 REMARK 500 8 SER A 52 -80.72 -122.33 REMARK 500 8 ASP A 54 -27.87 164.32 REMARK 500 8 SER A 80 92.98 -174.45 REMARK 500 9 THR A 19 171.96 54.98 REMARK 500 9 ASP A 54 -46.66 -156.78 REMARK 500 9 TRP A 79 -74.04 64.08 REMARK 500 9 SER A 80 -54.40 -154.15 REMARK 500 9 LYS A 81 -77.55 68.44 REMARK 500 10 THR A 19 154.14 57.76 REMARK 500 10 SER A 52 -75.56 -99.06 REMARK 500 10 ASP A 54 -25.99 163.47 REMARK 500 10 LYS A 81 -83.68 66.58 REMARK 500 11 THR A 19 165.41 55.96 REMARK 500 11 SER A 52 -80.09 -127.86 REMARK 500 11 ASP A 54 -36.19 72.03 REMARK 500 11 SER A 80 -161.32 55.72 REMARK 500 12 ASN A 18 -4.28 73.60 REMARK 500 12 THR A 19 156.42 57.35 REMARK 500 12 ASP A 53 -49.55 70.97 REMARK 500 12 TRP A 79 57.15 29.88 REMARK 500 12 SER A 80 -86.38 66.65 REMARK 500 13 THR A 19 150.69 58.38 REMARK 500 13 SER A 52 -149.53 -96.23 REMARK 500 13 ASP A 54 -18.68 -142.36 REMARK 500 13 TYR A 59 -168.63 -108.01 REMARK 500 13 THR A 78 -95.59 -73.50 REMARK 500 13 TRP A 79 -152.27 51.68 REMARK 500 14 THR A 19 151.60 56.18 REMARK 500 14 SER A 52 -85.28 -145.01 REMARK 500 14 ASP A 54 64.82 -52.80 REMARK 500 15 THR A 19 156.97 56.65 REMARK 500 15 ASP A 53 -47.13 74.75 REMARK 500 15 THR A 78 -118.16 -74.15 REMARK 500 15 TRP A 79 120.18 72.93 REMARK 500 15 SER A 80 -65.50 68.86 REMARK 500 16 THR A 19 164.51 55.90 REMARK 500 16 ASP A 53 -32.17 178.62 REMARK 500 16 ASP A 54 -39.67 -135.80 REMARK 500 16 TRP A 79 -75.03 72.90 REMARK 500 16 LYS A 81 34.17 -175.84 REMARK 500 17 THR A 19 162.65 55.04 REMARK 500 17 ASP A 53 -84.65 63.03 REMARK 500 17 ASP A 54 80.03 -151.72 REMARK 500 17 ARG A 55 119.09 173.46 REMARK 500 17 SER A 80 153.13 74.70 REMARK 500 18 ASN A 18 -81.81 70.51 REMARK 500 18 THR A 19 157.26 173.16 REMARK 500 18 ASP A 53 -36.36 174.22 REMARK 500 18 ASP A 54 -43.51 -131.98 REMARK 500 19 THR A 19 169.44 56.16 REMARK 500 19 SER A 52 -75.58 -77.23 REMARK 500 19 ASP A 54 -29.80 -173.96 REMARK 500 19 SER A 80 168.81 62.35 REMARK 500 19 LYS A 81 -33.06 71.82 REMARK 500 20 ASN A 18 -13.52 76.67 REMARK 500 20 THR A 19 156.98 58.93 REMARK 500 20 ASP A 54 -34.92 -169.05 REMARK 500 20 LEU A 58 128.13 69.50 REMARK 500 20 LEU A 61 119.07 -160.29 REMARK 500 20 THR A 78 -90.54 -66.01 REMARK 500 20 TRP A 79 166.49 67.11 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR346 RELATED DB: TARGETDB
DBREF 2HGC A 1 94 UNP O31639 O31639_BACSU 1 94
SEQADV 2HGC LEU A 95 UNP O31639 CLONING ARTIFACT SEQADV 2HGC GLU A 96 UNP O31639 CLONING ARTIFACT SEQADV 2HGC HIS A 97 UNP O31639 EXPRESSION TAG SEQADV 2HGC HIS A 98 UNP O31639 EXPRESSION TAG SEQADV 2HGC HIS A 99 UNP O31639 EXPRESSION TAG SEQADV 2HGC HIS A 100 UNP O31639 EXPRESSION TAG SEQADV 2HGC HIS A 101 UNP O31639 EXPRESSION TAG SEQADV 2HGC HIS A 102 UNP O31639 EXPRESSION TAG
SEQRES 1 A 102 MET ASN LYS ASP LYS LEU ARG TYR ALA ILE LEU LYS GLU SEQRES 2 A 102 ILE PHE GLU GLY ASN THR PRO LEU SER GLU ASN ASP ILE SEQRES 3 A 102 GLY VAL THR GLU ASP GLN PHE ASP ASP ALA VAL ASN PHE SEQRES 4 A 102 LEU LYS ARG GLU GLY TYR ILE ILE GLY VAL HIS TYR SER SEQRES 5 A 102 ASP ASP ARG PRO HIS LEU TYR LYS LEU GLY PRO GLU LEU SEQRES 6 A 102 THR GLU LYS GLY GLU ASN TYR LEU LYS GLU ASN GLY THR SEQRES 7 A 102 TRP SER LYS ALA TYR LYS THR ILE LYS GLU ILE LYS ASP SEQRES 8 A 102 TRP ILE LYS LEU GLU HIS HIS HIS HIS HIS HIS
HELIX 1 1 LEU A 6 ASN A 18 1 13 HELIX 2 2 SER A 22 GLY A 27 1 6 HELIX 3 3 THR A 29 GLY A 44 1 16 HELIX 4 4 THR A 66 GLY A 77 1 12
SHEET 1 A 2 ILE A 46 ILE A 47 0 SHEET 2 A 2 GLU A 64 LEU A 65 -1 O GLU A 64 N ILE A 47 SHEET 1 B 2 HIS A 50 TYR A 51 0 SHEET 2 B 2 PRO A 56 HIS A 57 -1 O HIS A 57 N HIS A 50
CISPEP 1 THR A 19 PRO A 20 1 0.33 CISPEP 2 THR A 19 PRO A 20 2 -3.69 CISPEP 3 THR A 19 PRO A 20 3 0.03 CISPEP 4 THR A 19 PRO A 20 4 -2.12 CISPEP 5 THR A 19 PRO A 20 5 -2.01 CISPEP 6 THR A 19 PRO A 20 6 -3.07 CISPEP 7 THR A 19 PRO A 20 7 -1.82 CISPEP 8 THR A 19 PRO A 20 8 0.66 CISPEP 9 THR A 19 PRO A 20 9 -3.98 CISPEP 10 THR A 19 PRO A 20 10 -0.60 CISPEP 11 THR A 19 PRO A 20 11 0.85 CISPEP 12 THR A 19 PRO A 20 12 0.45 CISPEP 13 THR A 19 PRO A 20 13 -0.30 CISPEP 14 THR A 19 PRO A 20 14 -2.90 CISPEP 15 THR A 19 PRO A 20 15 -2.22 CISPEP 16 THR A 19 PRO A 20 16 -1.91 CISPEP 17 THR A 19 PRO A 20 17 -3.33 CISPEP 18 THR A 19 PRO A 20 18 -0.17 CISPEP 19 THR A 19 PRO A 20 19 -1.54 CISPEP 20 THR A 19 PRO A 20 20 1.40
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000