10 20 30 40 50 60 70 80 2HFR - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIMICROBIAL PROTEIN 26-JUN-06 2HFR
TITLE SOLUTION STRUCTURE OF ANTIMICROBIAL PEPTIDE FOWLICIDIN 3
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOWLICIDIN-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 125-151; COMPND 5 SYNONYM: CATHELICIDIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN GALLUS SOURCE 4 GALLUS (CHICKEN).
KEYWDS ALPHA HELIX, ANTIMICROBIAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR Y.R.BOMMINENI,H.DAI,Y.GONG,O.PRAKASH,G.ZHANG
REVDAT 2 24-FEB-09 2HFR 1 VERSN REVDAT 1 17-APR-07 2HFR 0
JRNL AUTH Y.R.BOMMINENI,H.DAI,Y.X.GONG,J.L.SOULAGES, JRNL AUTH 2 S.C.FERNANDO,U.DESILVA,O.PRAKASH,G.ZHANG JRNL TITL FOWLICIDIN-3 IS AN ALPHA-HELICAL CATIONIC HOST JRNL TITL 2 DEFENSE PEPTIDE WITH POTENT ANTIBACTERIAL AND JRNL TITL 3 LIPOPOLYSACCHARIDE-NEUTRALIZING ACTIVITIES. JRNL REF FEBS J. V. 274 418 2007 JRNL REFN ISSN 1742-464X JRNL PMID 17229147 JRNL DOI 10.1111/J.1742-4658.2006.05589.X
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.XIAO,H.DAI,Y.R.BOMMINENI,J.L.SOULAGES,Y.GONG, REMARK 1 AUTH 2 O.PRAKASH,G.ZHANG REMARK 1 TITL STRUCTURE ACTIVITY RELATIONSHIPS OF FOWLICIDIN-1, REMARK 1 TITL 2 A CATHELICIDIN ANTIMICROBIAL PEPTIDE IN CHICKEN REMARK 1 REF EUR.J.BIOCHEM. V. 273 2581 2006 REMARK 1 REFN ISSN 0014-2956
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 205 NOE CONSTRAINTS
REMARK 4 REMARK 4 2HFR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB038296.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 4MM FOWLICIDIN 3, 50%TFE, 50% REMARK 210 H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1 REMARK 210 METHOD USED : ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 2 107.11 60.61 REMARK 500 1 PHE A 3 105.18 62.28 REMARK 500 1 LEU A 6 32.55 -142.97 REMARK 500 1 ASN A 19 38.88 -98.60 REMARK 500 1 ARG A 26 55.58 -165.08 REMARK 500 2 TRP A 4 86.64 -170.35 REMARK 500 2 LEU A 6 31.37 -163.48 REMARK 500 2 ASN A 19 49.29 -100.73 REMARK 500 2 LEU A 20 -66.97 -122.07 REMARK 500 3 LEU A 6 33.16 -168.12 REMARK 500 3 ASN A 19 64.34 -104.14 REMARK 500 3 LEU A 20 -44.74 -178.09 REMARK 500 4 ASN A 19 68.21 -110.27 REMARK 500 4 LEU A 20 -50.77 -152.80 REMARK 500 4 ARG A 26 54.75 -159.53 REMARK 500 5 TRP A 4 74.82 -168.33 REMARK 500 5 PRO A 5 63.57 -66.36 REMARK 500 5 LEU A 6 32.11 -168.18 REMARK 500 5 LEU A 20 -61.32 -169.88 REMARK 500 6 ARG A 2 54.94 -97.82 REMARK 500 6 LEU A 6 33.86 -160.63 REMARK 500 6 ASN A 19 51.59 -103.45 REMARK 500 6 LEU A 20 -71.03 -146.59 REMARK 500 6 ARG A 26 36.72 -158.47 REMARK 500 7 PHE A 3 -166.43 60.68 REMARK 500 7 LEU A 20 -44.64 178.76 REMARK 500 7 ARG A 26 54.04 -165.33 REMARK 500 8 LEU A 6 40.62 -159.89 REMARK 500 8 LEU A 20 -57.33 -176.38 REMARK 500 9 PRO A 5 31.96 -90.37 REMARK 500 9 LEU A 6 31.19 -155.87 REMARK 500 9 ASN A 19 72.72 -119.34 REMARK 500 9 LEU A 20 -48.85 -162.10 REMARK 500 9 ARG A 26 53.68 -163.22 REMARK 500 10 PRO A 5 44.32 -84.92 REMARK 500 10 LEU A 6 32.32 -167.24 REMARK 500 10 ASN A 19 65.66 -104.79 REMARK 500 10 LEU A 20 -40.09 -174.87 REMARK 500 10 ARG A 26 44.70 -155.91 REMARK 500 11 ARG A 2 134.26 179.38 REMARK 500 11 PHE A 3 86.61 62.41 REMARK 500 11 PRO A 5 -77.79 -60.32 REMARK 500 11 LEU A 20 -46.23 -165.09 REMARK 500 11 ARG A 26 36.83 -145.63 REMARK 500 12 LEU A 6 32.74 -171.29 REMARK 500 12 ASN A 19 59.47 -90.65 REMARK 500 12 LEU A 20 -43.46 -174.25 REMARK 500 12 ARG A 26 37.13 -156.87 REMARK 500 13 PRO A 5 62.42 -67.12 REMARK 500 13 LEU A 6 30.85 -165.35 REMARK 500 13 ASN A 19 59.43 -111.29 REMARK 500 13 LEU A 20 -78.62 178.76 REMARK 500 13 ARG A 26 40.15 -145.09 REMARK 500 14 PRO A 5 -73.90 -87.56 REMARK 500 14 ASN A 19 64.20 -103.27 REMARK 500 14 LEU A 20 -51.65 -153.22 REMARK 500 15 PHE A 3 -57.88 -133.38 REMARK 500 15 TRP A 4 99.26 -43.13 REMARK 500 15 PRO A 5 39.03 -93.57 REMARK 500 15 LEU A 6 28.86 -148.97 REMARK 500 15 ASN A 19 71.22 -117.76 REMARK 500 15 LEU A 20 -41.55 175.87 REMARK 500 15 ARG A 26 37.96 -148.50 REMARK 500 16 ARG A 2 99.22 58.24 REMARK 500 16 PHE A 3 -51.11 -134.00 REMARK 500 16 PRO A 5 -75.84 -42.25 REMARK 500 16 LEU A 6 38.61 -165.53 REMARK 500 16 ASN A 19 40.35 -97.30 REMARK 500 16 LEU A 20 -57.30 -149.56 REMARK 500 16 ARG A 26 43.44 -157.89 REMARK 500 17 PHE A 3 -79.14 -163.17 REMARK 500 17 PRO A 5 -86.55 -63.58 REMARK 500 17 ASN A 19 57.55 -101.68 REMARK 500 17 LEU A 20 -52.88 -175.38 REMARK 500 17 ARG A 26 42.51 -145.06 REMARK 500 18 PHE A 3 -50.42 -132.07 REMARK 500 18 PRO A 5 -72.77 -40.98 REMARK 500 18 LEU A 6 34.29 -164.37 REMARK 500 18 LEU A 20 -64.70 -175.79 REMARK 500 19 ARG A 2 -168.16 -106.35 REMARK 500 19 PHE A 3 74.07 62.44 REMARK 500 19 TRP A 4 102.21 -49.84 REMARK 500 19 LEU A 6 32.72 -141.90 REMARK 500 19 ASN A 19 30.63 -96.33 REMARK 500 19 LEU A 20 -63.63 -124.68 REMARK 500 19 ARG A 26 37.26 -146.98 REMARK 500 20 TRP A 4 68.79 -156.60 REMARK 500 20 LEU A 6 36.51 -156.92 REMARK 500 20 ASN A 19 60.90 -117.49 REMARK 500 20 LEU A 20 -58.63 178.35 REMARK 500 20 ARG A 26 35.74 -148.75 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AMN RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF FOWLICIDIN-1, A NOVEL CATHELICIDIN REMARK 900 ANTIMICROBIAL PEPTIDE FROM CHICKEN
DBREF 2HFR A 1 27 UNP Q2IAL6 Q2IAL6_CHICK 125 151
SEQRES 1 A 27 LYS ARG PHE TRP PRO LEU VAL PRO VAL ALA ILE ASN THR SEQRES 2 A 27 VAL ALA ALA GLY ILE ASN LEU TYR LYS ALA ILE ARG ARG SEQRES 3 A 27 LYS
HELIX 1 1 VAL A 9 ASN A 19 1 11
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000