10 20 30 40 50 60 70 80 2HFI - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-JUN-06 2HFI
TITLE SOLUTION NMR STRUCTURE OF PROTEIN YPPE FROM BACILLUS TITLE 2 SUBTILIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 SR213
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YPPE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YPPE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BC21(DE3)+MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SR213-21.2
KEYWDS YPPE_BACSU, GFT NMR, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR G.LIU,K.K.SINGARAPU,D.PARISH,A.ELETSKY,D.XU,D.SUKUMARAN, AUTHOR 2 C.K.HO,Y.FANG,K.CUNNINGHAM,L.-C.MA,R.XIAO,J.LIU,M.BARAN, AUTHOR 3 G.V.T.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE,T.SZYPERSKI, AUTHOR 4 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 2 24-FEB-09 2HFI 1 VERSN REVDAT 1 25-JUL-06 2HFI 0
JRNL AUTH G.LIU,K.K.SINGARAPU,D.PARISH,A.ELETSKY, JRNL AUTH 2 D.K.SUKUMARAN,D.XU,C.K.HO,Y.FANG,K.CUNNINGHAM, JRNL AUTH 3 L.-C.MA,R.XIAO,J.LIU,M.BARAN,G.V.T.SWAPNA, JRNL AUTH 4 T.B.ACTON,B.ROST,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF HYPOTHETICAL PROTEIN JRNL TITL 2 YPPE: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM JRNL TITL 3 TARGET SR213 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2HFI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB038289.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : BUFFER: MC2023 -- 50MM REMARK 210 ARGININE, 10MM DTT, 50MM BIS REMARK 210 TRIS PH 6.5, 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : SIMULTANEOUS HETERONUCLEAR REMARK 210 RESOLVED [1H,1H]-NOESY, GFT REMARK 210 (4,3)D HNNCABCA, GFT (4,3)D REMARK 210 CABCA(CO)NHN, GFT (4,3) HCCH, REMARK 210 HNCACB, HABCONH REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ, 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR C, NMRPIPE 2.3, XEASY REMARK 210 1.3.1.3, CYANA 2.1, REMARK 210 AUTOSTRUCTURE 2.0 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE PROTEIN START TO FORM DIMER AT NMR CONCENTRATION
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 124 REMARK 465 GLU A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 28 -34.18 169.81 REMARK 500 1 PHE A 37 -52.79 -173.33 REMARK 500 1 GLU A 38 -73.76 -64.18 REMARK 500 1 ARG A 65 -106.14 -87.27 REMARK 500 1 ARG A 66 123.69 172.91 REMARK 500 1 HIS A 95 -76.96 -87.28 REMARK 500 1 LYS A 96 -76.07 -153.76 REMARK 500 1 ASP A 121 123.98 73.04 REMARK 500 2 THR A 5 -98.52 62.34 REMARK 500 2 ASN A 29 -78.96 65.61 REMARK 500 2 SER A 33 94.29 63.33 REMARK 500 2 LYS A 68 -64.57 -93.78 REMARK 500 2 ASP A 121 135.81 72.36 REMARK 500 2 SER A 122 98.70 -164.13 REMARK 500 3 GLN A 4 80.04 56.93 REMARK 500 3 ASN A 29 -168.30 -168.47 REMARK 500 3 PHE A 36 -78.95 62.78 REMARK 500 3 PHE A 37 30.43 -80.54 REMARK 500 3 LYS A 41 -60.24 -163.34 REMARK 500 3 ARG A 66 137.85 71.83 REMARK 500 3 ASP A 121 68.89 61.91 REMARK 500 4 SER A 3 84.81 57.74 REMARK 500 4 THR A 5 -71.79 70.57 REMARK 500 4 HIS A 32 -79.09 -81.61 REMARK 500 4 LYS A 41 -57.25 -164.82 REMARK 500 4 ARG A 66 150.20 77.28 REMARK 500 4 HIS A 95 -67.15 -129.08 REMARK 500 4 LYS A 96 -57.94 -166.88 REMARK 500 4 ASP A 121 140.86 70.46 REMARK 500 5 LEU A 2 142.49 73.40 REMARK 500 5 LEU A 6 -38.93 170.05 REMARK 500 5 SER A 30 122.07 73.16 REMARK 500 5 SER A 33 -31.10 73.14 REMARK 500 5 ASP A 35 91.78 -169.19 REMARK 500 5 PHE A 36 -61.57 70.11 REMARK 500 5 GLU A 38 -40.18 71.17 REMARK 500 5 THR A 39 -63.90 -98.86 REMARK 500 5 LYS A 41 -66.53 -147.26 REMARK 500 5 ARG A 65 -166.33 -114.94 REMARK 500 5 HIS A 93 35.15 -82.62 REMARK 500 5 HIS A 95 -76.89 61.51 REMARK 500 5 LYS A 96 -54.87 -162.14 REMARK 500 6 ASN A 31 85.11 60.97 REMARK 500 6 SER A 33 141.31 70.61 REMARK 500 6 TYR A 34 -55.73 -160.64 REMARK 500 6 PHE A 37 -20.22 -141.25 REMARK 500 6 ARG A 65 -80.32 -106.42 REMARK 500 6 ARG A 66 141.33 -175.44 REMARK 500 6 TYR A 69 -70.08 67.16 REMARK 500 7 LEU A 2 112.15 -162.03 REMARK 500 7 SER A 3 37.90 -76.87 REMARK 500 7 THR A 5 161.11 173.44 REMARK 500 7 LEU A 6 -67.34 70.35 REMARK 500 7 LYS A 41 -60.93 -148.22 REMARK 500 7 ARG A 65 -99.44 -106.89 REMARK 500 7 ARG A 66 132.51 176.47 REMARK 500 7 HIS A 95 46.03 -88.34 REMARK 500 7 LYS A 96 -65.76 69.91 REMARK 500 8 THR A 5 -92.34 63.04 REMARK 500 8 ASN A 31 -174.89 66.44 REMARK 500 8 HIS A 32 51.40 -106.54 REMARK 500 8 PHE A 36 -84.48 56.36 REMARK 500 8 GLU A 38 -83.18 -76.76 REMARK 500 8 LYS A 41 -66.20 -144.59 REMARK 500 8 ASP A 121 -81.37 -126.62 REMARK 500 9 ASN A 29 -87.95 -132.22 REMARK 500 9 HIS A 32 43.60 -161.52 REMARK 500 9 TYR A 34 139.42 -173.26 REMARK 500 9 ASP A 35 71.01 -151.13 REMARK 500 9 PHE A 36 -16.39 72.27 REMARK 500 9 GLU A 38 -74.18 -40.46 REMARK 500 9 LYS A 41 -66.82 -106.52 REMARK 500 9 ARG A 65 -99.83 -100.53 REMARK 500 9 HIS A 95 -70.38 -80.64 REMARK 500 9 LYS A 96 -60.54 -162.60 REMARK 500 9 SER A 122 9.55 -154.66 REMARK 500 10 THR A 5 90.21 -62.04 REMARK 500 10 LEU A 6 -36.38 170.54 REMARK 500 10 ASN A 29 35.52 -80.55 REMARK 500 10 SER A 33 -172.78 74.99 REMARK 500 10 LYS A 41 -62.08 -166.81 REMARK 500 10 HIS A 92 89.93 57.27 REMARK 500 10 HIS A 95 -76.55 -93.65 REMARK 500 10 LYS A 96 -66.63 -148.97 REMARK 500 11 LEU A 2 -177.63 74.29 REMARK 500 11 GLN A 4 -144.95 56.37 REMARK 500 11 PHE A 36 -178.18 61.96 REMARK 500 11 PHE A 37 -82.30 65.28 REMARK 500 11 ILE A 40 57.20 -96.00 REMARK 500 11 LYS A 41 -60.98 -148.56 REMARK 500 11 TYR A 69 -60.75 -126.34 REMARK 500 11 HIS A 95 -71.98 -82.64 REMARK 500 11 LYS A 96 -75.73 -150.67 REMARK 500 11 ASP A 121 103.22 -165.45 REMARK 500 12 SER A 30 18.06 -142.48 REMARK 500 12 GLU A 38 -88.26 66.57 REMARK 500 12 ARG A 65 -163.09 -102.58 REMARK 500 12 LYS A 68 -72.37 -70.54 REMARK 500 12 LYS A 96 -76.53 61.45 REMARK 500 12 ASP A 121 104.52 67.39 REMARK 500 13 THR A 5 -34.71 176.57 REMARK 500 13 LYS A 28 89.53 60.83 REMARK 500 13 TYR A 34 -12.99 77.85 REMARK 500 13 PHE A 36 155.75 69.55 REMARK 500 13 PHE A 37 -57.22 71.08 REMARK 500 13 GLU A 38 -72.14 -64.73 REMARK 500 13 ARG A 65 -78.83 -99.60 REMARK 500 13 TYR A 69 -70.81 66.32 REMARK 500 13 ASP A 121 88.06 57.95 REMARK 500 13 SER A 122 87.98 -160.99 REMARK 500 14 SER A 3 -38.82 -176.48 REMARK 500 14 GLN A 4 -80.06 69.14 REMARK 500 14 THR A 5 36.42 -175.58 REMARK 500 14 LEU A 6 -36.24 -162.47 REMARK 500 14 ASN A 31 -84.74 -75.32 REMARK 500 14 HIS A 32 70.54 -163.85 REMARK 500 14 ASP A 35 -73.52 -75.91 REMARK 500 14 PHE A 36 -72.10 -165.19 REMARK 500 14 LYS A 41 -57.63 -169.52 REMARK 500 14 LYS A 68 -29.71 -157.84 REMARK 500 15 LYS A 28 51.63 -115.11 REMARK 500 15 SER A 33 -49.31 73.16 REMARK 500 15 ASP A 35 57.56 -152.33 REMARK 500 15 PHE A 36 -83.73 61.83 REMARK 500 15 LYS A 41 -60.80 -170.13 REMARK 500 15 HIS A 93 70.30 -118.85 REMARK 500 15 HIS A 95 -71.21 -89.04 REMARK 500 15 LYS A 96 -71.89 -159.98 REMARK 500 16 ASN A 31 112.96 69.17 REMARK 500 16 ASP A 35 -102.64 -175.68 REMARK 500 16 PHE A 37 -67.60 68.85 REMARK 500 16 LYS A 41 -58.14 -164.49 REMARK 500 16 ARG A 65 -88.32 -91.35 REMARK 500 16 ARG A 66 155.59 175.69 REMARK 500 16 TYR A 69 -54.21 -129.86 REMARK 500 16 HIS A 95 71.30 -109.14 REMARK 500 16 LYS A 96 -161.85 -166.73 REMARK 500 16 GLU A 120 -64.36 -91.09 REMARK 500 17 GLN A 4 -172.26 64.37 REMARK 500 17 TYR A 34 -76.07 67.81 REMARK 500 17 ASP A 35 143.93 69.75 REMARK 500 17 ILE A 40 -61.11 -102.61 REMARK 500 17 ARG A 65 -161.02 -114.45 REMARK 500 17 LYS A 68 107.03 64.55 REMARK 500 17 TYR A 69 -68.42 68.89 REMARK 500 17 HIS A 93 39.87 -89.44 REMARK 500 17 HIS A 95 -72.99 -134.91 REMARK 500 17 LYS A 96 -57.33 -149.55 REMARK 500 18 THR A 5 -78.42 -94.15 REMARK 500 18 HIS A 32 136.61 177.45 REMARK 500 18 ASP A 35 -68.08 -109.13 REMARK 500 18 PHE A 37 -163.52 70.36 REMARK 500 18 GLU A 38 -78.86 64.94 REMARK 500 18 LYS A 41 -60.79 170.59 REMARK 500 18 LYS A 68 -70.46 69.87 REMARK 500 18 HIS A 92 88.40 59.05 REMARK 500 18 SER A 122 -81.17 -125.63 REMARK 500 19 SER A 3 74.61 50.21 REMARK 500 19 THR A 5 -71.19 -157.20 REMARK 500 19 LYS A 28 82.34 58.38 REMARK 500 19 SER A 30 -146.12 -171.23 REMARK 500 19 TYR A 34 -48.05 -144.10 REMARK 500 19 PHE A 37 87.01 -152.91 REMARK 500 19 GLU A 38 -76.08 -177.94 REMARK 500 19 LYS A 41 -56.28 -144.92 REMARK 500 19 TYR A 69 -49.05 72.39 REMARK 500 19 HIS A 93 46.43 -92.81 REMARK 500 19 HIS A 95 -93.40 -84.92 REMARK 500 19 LYS A 96 -80.64 -143.99 REMARK 500 19 ASP A 121 -55.14 -178.89 REMARK 500 19 SER A 122 -69.01 -174.72 REMARK 500 20 LEU A 6 4.15 -163.95 REMARK 500 20 ASN A 29 147.16 71.59 REMARK 500 20 PHE A 37 -39.30 -150.79 REMARK 500 20 LYS A 41 -64.94 -168.27 REMARK 500 20 HIS A 92 81.48 37.05 REMARK 500 20 LYS A 96 -43.57 -164.85 REMARK 500 20 ASP A 121 103.90 -173.80 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR213 RELATED DB: TARGETDB
DBREF 2HFI A 1 123 UNP P50833 YPPE_BACSU 1 123
SEQADV 2HFI LEU A 124 UNP P50833 CLONING ARTIFACT SEQADV 2HFI GLU A 125 UNP P50833 CLONING ARTIFACT SEQADV 2HFI HIS A 126 UNP P50833 EXPRESSION TAG SEQADV 2HFI HIS A 127 UNP P50833 EXPRESSION TAG SEQADV 2HFI HIS A 128 UNP P50833 EXPRESSION TAG SEQADV 2HFI HIS A 129 UNP P50833 EXPRESSION TAG SEQADV 2HFI HIS A 130 UNP P50833 EXPRESSION TAG SEQADV 2HFI HIS A 131 UNP P50833 EXPRESSION TAG
SEQRES 1 A 131 MET LEU SER GLN THR LEU LEU GLU MET THR GLU GLN MET SEQRES 2 A 131 ILE GLU VAL ALA GLU LYS GLY ALA ASP ARG TYR GLN GLU SEQRES 3 A 131 GLY LYS ASN SER ASN HIS SER TYR ASP PHE PHE GLU THR SEQRES 4 A 131 ILE LYS PRO ALA VAL GLU GLU ASN ASP GLU LEU ALA ALA SEQRES 5 A 131 ARG TRP ALA GLU GLY ALA LEU GLU LEU ILE LYS VAL ARG SEQRES 6 A 131 ARG PRO LYS TYR VAL HIS LYS GLU GLN ILE GLU ALA VAL SEQRES 7 A 131 LYS ASP ASN PHE LEU GLU LEU VAL LEU GLN SER TYR VAL SEQRES 8 A 131 HIS HIS ILE HIS LYS LYS ARG PHE LYS ASP ILE THR GLU SEQRES 9 A 131 SER VAL LEU TYR THR LEU HIS ALA VAL LYS ASP GLU ILE SEQRES 10 A 131 ALA ARG GLU ASP SER ARG LEU GLU HIS HIS HIS HIS HIS SEQRES 11 A 131 HIS
HELIX 1 1 GLN A 4 GLY A 27 1 24 HELIX 2 2 THR A 39 ARG A 65 1 27 HELIX 3 3 HIS A 71 HIS A 92 1 22 HELIX 4 4 LYS A 96 ASP A 121 1 26
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000