10 20 30 40 50 60 70 80 2HDL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric Unit
HEADER CYTOKINE 20-JUN-06 2HDL
TITLE SOLUTION STRUCTURE OF BRAK/CXCL14
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL INDUCIBLE CYTOKINE B14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CXCL14, CHEMOKINE BRAK; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CXCL14, NJAC, SCYB14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SG13009[PREP4]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE308HT
KEYWDS CXCL14, BRAK, CHEMOKINE, NMR, CYTOKINE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR F.C.PETERSON,J.A.THORPE,A.G.HARDER,B.F.VOLKMAN,S.R.SCHWARZE
REVDAT 3 24-FEB-09 2HDL 1 VERSN REVDAT 2 14-NOV-06 2HDL 1 JRNL REVDAT 1 24-OCT-06 2HDL 0
JRNL AUTH F.C.PETERSON,J.A.THORPE,A.G.HARDER,B.F.VOLKMAN, JRNL AUTH 2 S.R.SCHWARZE JRNL TITL STRUCTURAL DETERMINANTS INVOLVED IN THE REGULATION JRNL TITL 2 OF CXCL14/BRAK EXPRESSION BY THE 26 S PROTEASOME. JRNL REF J.MOL.BIOL. V. 363 813 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16987528 JRNL DOI 10.1016/J.JMB.2006.08.057
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.3 REMARK 3 AUTHORS : SCHWIETERS, C.D., KUSZEWSKI, J.J, TJANDRA, N., REMARK 3 CLORE, G.M. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 894 NOE CONSTRAINTS (366 INTRA, 186 SEQUENTIAL, 133 MEDIUM AND REMARK 3 209 LONG RANGE CONSTRAINTS) AND 97 PHI AND PSI DIHEDRAL ANGLE REMARK 3 CONSTRAINTS.
REMARK 4 REMARK 4 2HDL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB038228.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 300 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM CXCL14 U-15N, 13C; 100MM REMARK 210 PHOSPHATE BUFFER, 150MM NACL, REMARK 210 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, 3D_13C- REMARK 210 SEPARATED_NOESY (AROMATIC) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE 2004, REMARK 210 SPSCAN 1.1.0, XEASY 1.3, REMARK 210 GARANT 2.1, CYANA 2.1 REMARK 210 METHOD USED : AUTOMATED METHODS WERE USED REMARK 210 FOR BACKBONE CHEMICAL SHIFT REMARK 210 ASSIGNMENT AND ITERATIVE NOE REMARK 210 REFINEMENT. FINAL STRUCTURES REMARK 210 WERE OBTAINED BY MOLECULAR REMARK 210 DYNAMICS IN EXPLICIT SOLVEN REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ALL TRIPLE-RESONANCE AND NOESY SPECTRA WERE ACQUIRED REMARK 210 USING A CRYOGENIC PROBE
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 0
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 -83.72 66.60 REMARK 500 1 ARG A 7 -61.40 -144.17 REMARK 500 1 GLU A 31 178.04 64.29 REMARK 500 1 SER A 40 -72.13 177.20 REMARK 500 1 ARG A 45 121.22 -35.57 REMARK 500 1 PRO A 53 8.35 -66.22 REMARK 500 1 VAL A 74 84.18 77.68 REMARK 500 2 LYS A 2 26.43 -147.27 REMARK 500 2 CYS A 5 -65.44 -127.89 REMARK 500 2 GLU A 31 -163.83 53.07 REMARK 500 2 SER A 40 -170.32 169.65 REMARK 500 2 VAL A 41 -35.43 72.58 REMARK 500 3 LYS A 4 -168.84 58.56 REMARK 500 3 ARG A 7 -61.80 -121.59 REMARK 500 3 GLU A 31 175.51 68.82 REMARK 500 3 SER A 40 -30.75 163.60 REMARK 500 3 PRO A 53 0.39 -67.51 REMARK 500 3 VAL A 74 103.32 85.70 REMARK 500 4 SER A 6 -64.88 70.97 REMARK 500 4 ARG A 7 -54.74 -175.78 REMARK 500 4 GLU A 31 177.61 72.84 REMARK 500 4 SER A 40 -52.53 -179.26 REMARK 500 5 SER A 6 157.93 175.82 REMARK 500 5 LYS A 8 -55.44 -136.01 REMARK 500 5 GLU A 31 -171.36 58.14 REMARK 500 5 SER A 40 -42.19 168.46 REMARK 500 6 CYS A 3 106.47 71.25 REMARK 500 6 LYS A 4 -79.23 -95.26 REMARK 500 6 CYS A 5 -87.22 59.81 REMARK 500 6 LYS A 25 -44.22 72.33 REMARK 500 6 GLU A 31 176.00 70.17 REMARK 500 6 SER A 40 -70.02 173.05 REMARK 500 6 VAL A 41 -70.81 30.84 REMARK 500 6 PRO A 53 9.82 -67.44 REMARK 500 7 LYS A 4 -3.01 -141.40 REMARK 500 7 CYS A 5 149.69 69.34 REMARK 500 7 SER A 6 -80.16 -60.54 REMARK 500 7 ARG A 7 -78.88 -135.71 REMARK 500 7 LYS A 8 -10.35 -144.59 REMARK 500 7 LYS A 25 -55.91 71.01 REMARK 500 7 GLU A 31 -162.51 54.27 REMARK 500 7 SER A 40 -36.04 164.31 REMARK 500 8 LYS A 4 92.51 -169.59 REMARK 500 8 CYS A 5 32.05 -165.56 REMARK 500 8 HIS A 28 30.35 -87.27 REMARK 500 8 GLU A 31 -176.03 55.96 REMARK 500 8 SER A 40 -38.25 167.19 REMARK 500 8 ARG A 45 88.35 60.15 REMARK 500 8 PRO A 53 16.39 -68.01 REMARK 500 8 ARG A 73 70.71 -168.16 REMARK 500 8 TYR A 75 80.40 53.51 REMARK 500 8 GLU A 76 148.25 179.87 REMARK 500 9 LYS A 4 131.24 72.79 REMARK 500 9 ARG A 7 -66.10 65.98 REMARK 500 9 LYS A 8 -47.36 -132.08 REMARK 500 9 LYS A 25 -46.80 72.42 REMARK 500 9 GLU A 31 179.81 62.14 REMARK 500 9 SER A 40 -163.29 168.46 REMARK 500 9 VAL A 41 -58.31 70.39 REMARK 500 9 ARG A 45 81.99 49.96 REMARK 500 9 VAL A 74 144.37 78.60 REMARK 500 10 LYS A 2 -1.35 68.39 REMARK 500 10 CYS A 3 85.58 65.29 REMARK 500 10 LYS A 4 12.68 -143.97 REMARK 500 10 CYS A 5 -65.99 70.71 REMARK 500 10 SER A 6 -60.31 -161.00 REMARK 500 10 ARG A 7 83.96 -155.89 REMARK 500 10 LYS A 8 -171.38 60.57 REMARK 500 10 HIS A 28 30.26 -92.61 REMARK 500 10 GLU A 31 -160.58 50.13 REMARK 500 10 SER A 40 -45.70 -175.33 REMARK 500 10 ARG A 45 89.85 59.23 REMARK 500 10 PRO A 53 2.57 -60.94 REMARK 500 10 GLU A 76 -79.58 -137.84 REMARK 500 11 LYS A 4 162.45 74.84 REMARK 500 11 CYS A 5 -64.29 70.77 REMARK 500 11 SER A 6 -78.59 63.89 REMARK 500 11 ARG A 7 10.28 -158.86 REMARK 500 11 LYS A 25 -48.51 71.65 REMARK 500 11 GLU A 31 -177.63 65.31 REMARK 500 11 SER A 40 -74.09 170.14 REMARK 500 11 ARG A 45 82.72 66.40 REMARK 500 11 PRO A 53 11.99 -65.23 REMARK 500 11 VAL A 74 68.85 67.64 REMARK 500 11 GLU A 76 123.60 67.70 REMARK 500 12 CYS A 3 154.96 74.15 REMARK 500 12 ARG A 7 80.63 -163.62 REMARK 500 12 LYS A 25 -61.77 68.62 REMARK 500 12 GLU A 31 175.07 58.09 REMARK 500 12 SER A 40 -79.36 -170.45 REMARK 500 12 ARG A 45 92.95 50.66 REMARK 500 12 VAL A 74 -81.54 63.65 REMARK 500 13 CYS A 5 128.37 82.26 REMARK 500 13 GLU A 31 175.17 63.73 REMARK 500 13 SER A 40 -21.46 166.09 REMARK 500 13 ARG A 45 82.37 53.21 REMARK 500 13 PRO A 53 4.11 -69.73 REMARK 500 13 VAL A 74 106.88 -28.88 REMARK 500 13 GLU A 76 115.08 70.16 REMARK 500 14 CYS A 5 -54.18 75.81 REMARK 500 14 GLU A 31 -172.37 63.66 REMARK 500 14 SER A 40 -30.73 174.61 REMARK 500 14 ARG A 45 83.40 55.56 REMARK 500 14 PRO A 53 7.17 -65.54 REMARK 500 15 CYS A 3 -52.47 66.33 REMARK 500 15 LYS A 8 -39.97 -136.52 REMARK 500 15 GLU A 31 -175.95 54.97 REMARK 500 15 SER A 40 -63.24 153.50 REMARK 500 16 CYS A 3 95.70 65.66 REMARK 500 16 GLU A 31 -169.40 54.50 REMARK 500 16 SER A 40 -32.87 80.52 REMARK 500 16 PRO A 53 1.25 -68.80 REMARK 500 16 VAL A 74 69.83 66.41 REMARK 500 17 LYS A 2 -155.97 -121.82 REMARK 500 17 ARG A 7 -80.24 -140.67 REMARK 500 17 LYS A 8 -58.65 -179.41 REMARK 500 17 GLU A 31 151.06 74.55 REMARK 500 17 SER A 40 -75.56 -177.06 REMARK 500 17 ARG A 45 92.37 34.95 REMARK 500 18 CYS A 3 137.73 -172.14 REMARK 500 18 LYS A 8 155.25 67.38 REMARK 500 18 GLU A 31 179.70 63.13 REMARK 500 18 SER A 40 -89.40 -169.88 REMARK 500 18 VAL A 41 -77.73 42.54 REMARK 500 19 SER A 6 -72.91 -95.60 REMARK 500 19 GLU A 31 -161.83 57.57 REMARK 500 19 SER A 40 -175.68 87.45 REMARK 500 19 VAL A 41 14.23 59.69 REMARK 500 19 GLU A 76 157.35 70.77 REMARK 500 20 CYS A 5 -66.19 174.20 REMARK 500 20 SER A 6 -69.63 61.32 REMARK 500 20 ARG A 7 85.09 -156.79 REMARK 500 20 HIS A 28 36.67 -93.20 REMARK 500 20 GLU A 31 -159.94 52.10 REMARK 500 20 SER A 40 -66.01 -169.58 REMARK 500 20 ARG A 73 -54.96 -123.73 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7229 RELATED DB: BMRB
DBREF 2HDL A 1 77 UNP O95715 SCYBE_HUMAN 23 99
SEQADV 2HDL GLY A 0 UNP O95715 CLONING ARTIFACT
SEQRES 1 A 78 GLY SER LYS CYS LYS CYS SER ARG LYS GLY PRO LYS ILE SEQRES 2 A 78 ARG TYR SER ASP VAL LYS LYS LEU GLU MET LYS PRO LYS SEQRES 3 A 78 TYR PRO HIS CYS GLU GLU LYS MET VAL ILE ILE THR THR SEQRES 4 A 78 LYS SER VAL SER ARG TYR ARG GLY GLN GLU HIS CYS LEU SEQRES 5 A 78 HIS PRO LYS LEU GLN SER THR LYS ARG PHE ILE LYS TRP SEQRES 6 A 78 TYR ASN ALA TRP ASN GLU LYS ARG ARG VAL TYR GLU GLU
HELIX 1 1 ARG A 13 SER A 15 5 3 HELIX 2 2 LEU A 55 ARG A 73 1 19
SHEET 1 A 3 VAL A 17 MET A 22 0 SHEET 2 A 3 VAL A 34 THR A 38 -1 O ILE A 35 N GLU A 21 SHEET 3 A 3 GLU A 48 LEU A 51 -1 O HIS A 49 N ILE A 36
SSBOND 1 CYS A 3 CYS A 29 1555 1555 2.04 SSBOND 2 CYS A 5 CYS A 50 1555 1555 2.04
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000