10 20 30 40 50 60 70 80 2H99 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 09-JUN-06 2H99
TITLE CRYSTAL STRUCTURE OF THE EFFECTOR BINDING DOMAIN OF A BENM VARIANT TITLE 2 (R156H,T157S)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EFFECTOR BINDING DOMAIN; COMPND 5 SYNONYM: BEN AND CAT OPERON TRANSCRIPTIONAL REGULATOR; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER SP.; SOURCE 3 ORGANISM_TAXID: 62977; SOURCE 4 STRAIN: ADP1; SOURCE 5 GENE: BENM, BENR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B
KEYWDS LTTR, BENM, TRANSCRIPTIONAL REGULATION, CATM, TRANSCRIPTION
EXPDTA X-RAY DIFFRACTION
AUTHOR O.C.EZEZIKA,S.H.CRAVEN,E.L.NEIDLE,C.MOMANY
REVDAT 4 13-JUL-11 2H99 1 VERSN REVDAT 3 19-MAY-09 2H99 1 JRNL REVDAT 2 24-FEB-09 2H99 1 VERSN REVDAT 1 26-JUN-07 2H99 0
JRNL AUTH S.H.CRAVEN,O.C.EZEZIKA,S.HADDAD,R.A.HALL,C.MOMANY,E.L.NEIDLE JRNL TITL INDUCER RESPONSES OF BENM, A LYSR-TYPE TRANSCRIPTIONAL JRNL TITL 2 REGULATOR FROM ACINETOBACTER BAYLYI ADP1. JRNL REF MOL.MICROBIOL. V. 72 881 2009 JRNL REFN ISSN 0950-382X JRNL PMID 19400783 JRNL DOI 10.1111/J.1365-2958.2009.06686.X
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH O.C.EZEZIKA,S.HADDAD,T.J.CLARK,E.L.NEIDLE,C.MOMANY REMARK 1 TITL DISTINCT EFFECTOR-BINDING SITES ENABLE SYNERGISTIC REMARK 1 TITL 2 TRANSCRIPTIONAL ACTIVATION BY BENM, A LYSR-TYPE REGULATOR REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN
REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 41766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2216 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2974 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3439 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 578 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.75000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : -1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.781 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3614 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3366 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4907 ; 1.085 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7831 ; 0.731 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 5.735 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;36.318 ;23.544 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 631 ;11.159 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ; 9.713 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 549 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3944 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 703 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 759 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3672 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1749 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2079 ; 0.079 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 483 ; 0.113 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.115 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2862 ; 0.917 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 876 ; 0.087 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3573 ; 1.306 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1611 ; 2.654 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1332 ; 3.512 ;10.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS
REMARK 4 REMARK 4 2H99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB038089.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44035 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ACCESSION CODE 2F97, BENM-EBD (HIGH PH) REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PRECIPITANT: 0.015 M MAGNESIUM REMARK 280 ACETATE, 0.05 M SODIUM CACODLYLATE, 1.7 M AMMONIUM SULFATE REMARK 280 PROTEIN: 20 MM TRIS HCL, 0.5 M NACL, PH 7.9, 10% GLYCEROL EQUAL REMARK 280 VOLUMES MIXED, MICROBATCH UNDER OIL. THE GROWING CRYSTALLIZATION REMARK 280 SOLUTION WAS IN PH 6 AND THE PROTEIN SOLUTION WAS IN PH 7.9 REMARK 280 CONDITION, TEMPERATURE 288.2K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.46850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.74750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.25300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.74750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.46850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.25300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 ARG A 4 REMARK 465 HIS A 5 REMARK 465 LEU A 6 REMARK 465 ARG A 7 REMARK 465 TYR A 8 REMARK 465 PHE A 9 REMARK 465 VAL A 10 REMARK 465 ALA A 11 REMARK 465 VAL A 12 REMARK 465 VAL A 13 REMARK 465 GLU A 14 REMARK 465 GLU A 15 REMARK 465 GLN A 16 REMARK 465 SER A 17 REMARK 465 PHE A 18 REMARK 465 THR A 19 REMARK 465 LYS A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 ASP A 23 REMARK 465 LYS A 24 REMARK 465 LEU A 25 REMARK 465 CYS A 26 REMARK 465 ILE A 27 REMARK 465 ALA A 28 REMARK 465 GLN A 29 REMARK 465 PRO A 30 REMARK 465 PRO A 31 REMARK 465 LEU A 32 REMARK 465 SER A 33 REMARK 465 ARG A 34 REMARK 465 GLN A 35 REMARK 465 ILE A 36 REMARK 465 GLN A 37 REMARK 465 ASN A 38 REMARK 465 LEU A 39 REMARK 465 GLU A 40 REMARK 465 GLU A 41 REMARK 465 GLU A 42 REMARK 465 LEU A 43 REMARK 465 GLY A 44 REMARK 465 ILE A 45 REMARK 465 GLN A 46 REMARK 465 LEU A 47 REMARK 465 LEU A 48 REMARK 465 GLU A 49 REMARK 465 ARG A 50 REMARK 465 GLY A 51 REMARK 465 SER A 52 REMARK 465 ARG A 53 REMARK 465 PRO A 54 REMARK 465 VAL A 55 REMARK 465 LYS A 56 REMARK 465 THR A 57 REMARK 465 THR A 58 REMARK 465 PRO A 59 REMARK 465 GLU A 60 REMARK 465 GLY A 61 REMARK 465 HIS A 62 REMARK 465 PHE A 63 REMARK 465 PHE A 64 REMARK 465 TYR A 65 REMARK 465 GLN A 66 REMARK 465 TYR A 67 REMARK 465 ALA A 68 REMARK 465 ILE A 69 REMARK 465 LYS A 70 REMARK 465 LEU A 71 REMARK 465 LEU A 72 REMARK 465 SER A 73 REMARK 465 ASN A 74 REMARK 465 VAL A 75 REMARK 465 ASP A 76 REMARK 465 GLN A 77 REMARK 465 MET A 78 REMARK 465 VAL A 79 REMARK 465 SER A 80 REMARK 465 MET A 81 REMARK 465 THR A 82 REMARK 465 LYS A 83 REMARK 465 ARG A 84 REMARK 465 ILE A 85 REMARK 465 ALA A 86 REMARK 465 SER A 87 REMARK 465 VAL A 88 REMARK 465 GLU A 89 REMARK 465 LEU A 305 REMARK 465 GLU A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LEU B 3 REMARK 465 ARG B 4 REMARK 465 HIS B 5 REMARK 465 LEU B 6 REMARK 465 ARG B 7 REMARK 465 TYR B 8 REMARK 465 PHE B 9 REMARK 465 VAL B 10 REMARK 465 ALA B 11 REMARK 465 VAL B 12 REMARK 465 VAL B 13 REMARK 465 GLU B 14 REMARK 465 GLU B 15 REMARK 465 GLN B 16 REMARK 465 SER B 17 REMARK 465 PHE B 18 REMARK 465 THR B 19 REMARK 465 LYS B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 ASP B 23 REMARK 465 LYS B 24 REMARK 465 LEU B 25 REMARK 465 CYS B 26 REMARK 465 ILE B 27 REMARK 465 ALA B 28 REMARK 465 GLN B 29 REMARK 465 PRO B 30 REMARK 465 PRO B 31 REMARK 465 LEU B 32 REMARK 465 SER B 33 REMARK 465 ARG B 34 REMARK 465 GLN B 35 REMARK 465 ILE B 36 REMARK 465 GLN B 37 REMARK 465 ASN B 38 REMARK 465 LEU B 39 REMARK 465 GLU B 40 REMARK 465 GLU B 41 REMARK 465 GLU B 42 REMARK 465 LEU B 43 REMARK 465 GLY B 44 REMARK 465 ILE B 45 REMARK 465 GLN B 46 REMARK 465 LEU B 47 REMARK 465 LEU B 48 REMARK 465 GLU B 49 REMARK 465 ARG B 50 REMARK 465 GLY B 51 REMARK 465 SER B 52 REMARK 465 ARG B 53 REMARK 465 PRO B 54 REMARK 465 VAL B 55 REMARK 465 LYS B 56 REMARK 465 THR B 57 REMARK 465 THR B 58 REMARK 465 PRO B 59 REMARK 465 GLU B 60 REMARK 465 GLY B 61 REMARK 465 HIS B 62 REMARK 465 PHE B 63 REMARK 465 PHE B 64 REMARK 465 TYR B 65 REMARK 465 GLN B 66 REMARK 465 TYR B 67 REMARK 465 ALA B 68 REMARK 465 ILE B 69 REMARK 465 LYS B 70 REMARK 465 LEU B 71 REMARK 465 LEU B 72 REMARK 465 SER B 73 REMARK 465 ASN B 74 REMARK 465 VAL B 75 REMARK 465 ASP B 76 REMARK 465 GLN B 77 REMARK 465 MET B 78 REMARK 465 VAL B 79 REMARK 465 SER B 80 REMARK 465 MET B 81 REMARK 465 THR B 82 REMARK 465 LYS B 83 REMARK 465 ARG B 84 REMARK 465 ILE B 85 REMARK 465 ALA B 86 REMARK 465 SER B 87 REMARK 465 VAL B 88 REMARK 465 GLU B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 HIS B 310 REMARK 465 HIS B 311 REMARK 465 HIS B 312
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 276 34.21 -99.61 REMARK 500 PRO A 302 -148.93 -78.75 REMARK 500 GLU B 300 -45.09 -164.58 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 730 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH A 799 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH A 827 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH B 735 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH B 752 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH B 825 DISTANCE = 5.13 ANGSTROMS REMARK 525 HOH B 860 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 870 DISTANCE = 5.18 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 579 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 580 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 581 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 582 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 583 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 584 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 585 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 586 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 587 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 588 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 589 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 590
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F6P RELATED DB: PDB REMARK 900 BENM-EBD SEMET REMARK 900 RELATED ID: 2F7A RELATED DB: PDB REMARK 900 BENM-EBD REMARK 900 RELATED ID: 2F78 RELATED DB: PDB REMARK 900 BENM-EBD + BENZOATE REMARK 900 RELATED ID: 2F7B RELATED DB: PDB REMARK 900 CATM-EBD REMARK 900 RELATED ID: 2F97 RELATED DB: PDB REMARK 900 BENM-EBD (HIGH PH) REMARK 900 RELATED ID: 2F8D RELATED DB: PDB REMARK 900 BENM-EBD (HIGH PH) REMARK 900 RELATED ID: 2H98 RELATED DB: PDB REMARK 900 RELATED ID: 2H9B RELATED DB: PDB REMARK 900 RELATED ID: 2H9Q RELATED DB: PDB
DBREF 2H99 A 1 304 UNP O68014 BENM_ACIAD 1 304 DBREF 2H99 B 1 304 UNP O68014 BENM_ACIAD 1 304
SEQADV 2H99 HIS A 156 UNP O68014 ARG 156 ENGINEERED SEQADV 2H99 SER A 157 UNP O68014 THR 157 ENGINEERED SEQADV 2H99 LEU A 305 UNP O68014 EXPRESSION TAG SEQADV 2H99 GLU A 306 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS A 307 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS A 308 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS A 309 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS A 310 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS A 311 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS A 312 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS B 156 UNP O68014 ARG 156 ENGINEERED SEQADV 2H99 SER B 157 UNP O68014 THR 157 ENGINEERED SEQADV 2H99 LEU B 305 UNP O68014 EXPRESSION TAG SEQADV 2H99 GLU B 306 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS B 307 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS B 308 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS B 309 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS B 310 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS B 311 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS B 312 UNP O68014 EXPRESSION TAG
SEQRES 1 A 312 MET GLU LEU ARG HIS LEU ARG TYR PHE VAL ALA VAL VAL SEQRES 2 A 312 GLU GLU GLN SER PHE THR LYS ALA ALA ASP LYS LEU CYS SEQRES 3 A 312 ILE ALA GLN PRO PRO LEU SER ARG GLN ILE GLN ASN LEU SEQRES 4 A 312 GLU GLU GLU LEU GLY ILE GLN LEU LEU GLU ARG GLY SER SEQRES 5 A 312 ARG PRO VAL LYS THR THR PRO GLU GLY HIS PHE PHE TYR SEQRES 6 A 312 GLN TYR ALA ILE LYS LEU LEU SER ASN VAL ASP GLN MET SEQRES 7 A 312 VAL SER MET THR LYS ARG ILE ALA SER VAL GLU LYS THR SEQRES 8 A 312 ILE ARG ILE GLY PHE VAL GLY SER LEU LEU PHE GLY LEU SEQRES 9 A 312 LEU PRO ARG ILE ILE HIS LEU TYR ARG GLN ALA HIS PRO SEQRES 10 A 312 ASN LEU ARG ILE GLU LEU TYR GLU MET GLY THR LYS ALA SEQRES 11 A 312 GLN THR GLU ALA LEU LYS GLU GLY ARG ILE ASP ALA GLY SEQRES 12 A 312 PHE GLY ARG LEU LYS ILE SER ASP PRO ALA ILE LYS HIS SEQRES 13 A 312 SER LEU LEU ARG ASN GLU ARG LEU MET VAL ALA VAL HIS SEQRES 14 A 312 ALA SER HIS PRO LEU ASN GLN MET LYS ASP LYS GLY VAL SEQRES 15 A 312 HIS LEU ASN ASP LEU ILE ASP GLU LYS ILE LEU LEU TYR SEQRES 16 A 312 PRO SER SER PRO LYS PRO ASN PHE SER THR HIS VAL MET SEQRES 17 A 312 ASN ILE PHE SER ASP HIS GLY LEU GLU PRO THR LYS ILE SEQRES 18 A 312 ASN GLU VAL ARG GLU VAL GLN LEU ALA LEU GLY LEU VAL SEQRES 19 A 312 ALA ALA GLY GLU GLY ILE SER LEU VAL PRO ALA SER THR SEQRES 20 A 312 GLN SER ILE GLN LEU PHE ASN LEU SER TYR VAL PRO LEU SEQRES 21 A 312 LEU ASP PRO ASP ALA ILE THR PRO ILE TYR ILE ALA VAL SEQRES 22 A 312 ARG ASN MET GLU GLU SER THR TYR ILE TYR SER LEU TYR SEQRES 23 A 312 GLU THR ILE ARG GLN ILE TYR ALA TYR GLU GLY PHE THR SEQRES 24 A 312 GLU PRO PRO ASN TRP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 312 MET GLU LEU ARG HIS LEU ARG TYR PHE VAL ALA VAL VAL SEQRES 2 B 312 GLU GLU GLN SER PHE THR LYS ALA ALA ASP LYS LEU CYS SEQRES 3 B 312 ILE ALA GLN PRO PRO LEU SER ARG GLN ILE GLN ASN LEU SEQRES 4 B 312 GLU GLU GLU LEU GLY ILE GLN LEU LEU GLU ARG GLY SER SEQRES 5 B 312 ARG PRO VAL LYS THR THR PRO GLU GLY HIS PHE PHE TYR SEQRES 6 B 312 GLN TYR ALA ILE LYS LEU LEU SER ASN VAL ASP GLN MET SEQRES 7 B 312 VAL SER MET THR LYS ARG ILE ALA SER VAL GLU LYS THR SEQRES 8 B 312 ILE ARG ILE GLY PHE VAL GLY SER LEU LEU PHE GLY LEU SEQRES 9 B 312 LEU PRO ARG ILE ILE HIS LEU TYR ARG GLN ALA HIS PRO SEQRES 10 B 312 ASN LEU ARG ILE GLU LEU TYR GLU MET GLY THR LYS ALA SEQRES 11 B 312 GLN THR GLU ALA LEU LYS GLU GLY ARG ILE ASP ALA GLY SEQRES 12 B 312 PHE GLY ARG LEU LYS ILE SER ASP PRO ALA ILE LYS HIS SEQRES 13 B 312 SER LEU LEU ARG ASN GLU ARG LEU MET VAL ALA VAL HIS SEQRES 14 B 312 ALA SER HIS PRO LEU ASN GLN MET LYS ASP LYS GLY VAL SEQRES 15 B 312 HIS LEU ASN ASP LEU ILE ASP GLU LYS ILE LEU LEU TYR SEQRES 16 B 312 PRO SER SER PRO LYS PRO ASN PHE SER THR HIS VAL MET SEQRES 17 B 312 ASN ILE PHE SER ASP HIS GLY LEU GLU PRO THR LYS ILE SEQRES 18 B 312 ASN GLU VAL ARG GLU VAL GLN LEU ALA LEU GLY LEU VAL SEQRES 19 B 312 ALA ALA GLY GLU GLY ILE SER LEU VAL PRO ALA SER THR SEQRES 20 B 312 GLN SER ILE GLN LEU PHE ASN LEU SER TYR VAL PRO LEU SEQRES 21 B 312 LEU ASP PRO ASP ALA ILE THR PRO ILE TYR ILE ALA VAL SEQRES 22 B 312 ARG ASN MET GLU GLU SER THR TYR ILE TYR SER LEU TYR SEQRES 23 B 312 GLU THR ILE ARG GLN ILE TYR ALA TYR GLU GLY PHE THR SEQRES 24 B 312 GLU PRO PRO ASN TRP LEU GLU HIS HIS HIS HIS HIS HIS
HET SO4 B 579 5 HET SO4 A 580 5 HET SO4 B 581 5 HET SO4 B 582 5 HET SO4 A 583 5 HET ACT B 584 4 HET ACT A 585 4 HET ACT B 586 4 HET ACT A 587 4 HET ACT A 588 4 HET CL B 589 1 HET GOL B 590 6
HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 ACT 5(C2 H3 O2 1-) FORMUL 13 CL CL 1- FORMUL 14 GOL C3 H8 O3 FORMUL 15 HOH *578(H2 O)
HELIX 1 1 GLY A 98 GLY A 103 5 6 HELIX 2 2 LEU A 104 ALA A 115 1 12 HELIX 3 3 GLY A 127 GLU A 137 1 11 HELIX 4 4 HIS A 172 LYS A 178 5 7 HELIX 5 5 HIS A 183 LEU A 187 5 5 HELIX 6 6 ASN A 202 ASP A 213 1 12 HELIX 7 7 GLU A 226 ALA A 236 1 11 HELIX 8 8 SER A 246 ILE A 250 5 5 HELIX 9 9 SER A 279 GLY A 297 1 19 HELIX 10 10 GLY B 98 GLY B 103 5 6 HELIX 11 11 LEU B 104 HIS B 116 1 13 HELIX 12 12 GLY B 127 GLU B 137 1 11 HELIX 13 13 HIS B 172 LYS B 178 5 7 HELIX 14 14 HIS B 183 LEU B 187 5 5 HELIX 15 15 ASN B 202 ASP B 213 1 12 HELIX 16 16 GLU B 226 ALA B 236 1 11 HELIX 17 17 SER B 246 ILE B 250 5 5 HELIX 18 18 SER B 279 GLU B 296 1 18
SHEET 1 A 6 ARG A 120 GLU A 125 0 SHEET 2 A 6 THR A 91 PHE A 96 1 N ILE A 94 O GLU A 122 SHEET 3 A 6 ALA A 142 GLY A 145 1 O ALA A 142 N GLY A 95 SHEET 4 A 6 ILE A 266 ARG A 274 -1 O ALA A 272 N GLY A 143 SHEET 5 A 6 ILE A 154 HIS A 169 -1 N GLU A 162 O THR A 267 SHEET 6 A 6 SER A 241 PRO A 244 -1 O SER A 241 N ALA A 167 SHEET 1 B 6 ARG A 120 GLU A 125 0 SHEET 2 B 6 THR A 91 PHE A 96 1 N ILE A 94 O GLU A 122 SHEET 3 B 6 ALA A 142 GLY A 145 1 O ALA A 142 N GLY A 95 SHEET 4 B 6 ILE A 266 ARG A 274 -1 O ALA A 272 N GLY A 143 SHEET 5 B 6 ILE A 154 HIS A 169 -1 N GLU A 162 O THR A 267 SHEET 6 B 6 LEU A 255 PRO A 259 -1 O SER A 256 N VAL A 168 SHEET 1 C 2 LYS A 191 LEU A 194 0 SHEET 2 C 2 LYS A 220 GLU A 223 1 O LYS A 220 N ILE A 192 SHEET 1 D 6 LEU B 119 GLU B 125 0 SHEET 2 D 6 LYS B 90 PHE B 96 1 N LYS B 90 O ARG B 120 SHEET 3 D 6 ALA B 142 GLY B 145 1 O PHE B 144 N GLY B 95 SHEET 4 D 6 ILE B 266 ARG B 274 -1 O TYR B 270 N GLY B 145 SHEET 5 D 6 ILE B 154 HIS B 169 -1 N GLU B 162 O THR B 267 SHEET 6 D 6 SER B 241 PRO B 244 -1 O SER B 241 N ALA B 167 SHEET 1 E 6 LEU B 119 GLU B 125 0 SHEET 2 E 6 LYS B 90 PHE B 96 1 N LYS B 90 O ARG B 120 SHEET 3 E 6 ALA B 142 GLY B 145 1 O PHE B 144 N GLY B 95 SHEET 4 E 6 ILE B 266 ARG B 274 -1 O TYR B 270 N GLY B 145 SHEET 5 E 6 ILE B 154 HIS B 169 -1 N GLU B 162 O THR B 267 SHEET 6 E 6 LEU B 255 PRO B 259 -1 O VAL B 258 N VAL B 166 SHEET 1 F 2 LYS B 191 LEU B 194 0 SHEET 2 F 2 LYS B 220 GLU B 223 1 O ASN B 222 N LEU B 194
CISPEP 1 TYR A 195 PRO A 196 0 -5.40 CISPEP 2 LYS A 200 PRO A 201 0 4.65 CISPEP 3 ASN A 303 TRP A 304 0 3.62 CISPEP 4 TYR B 195 PRO B 196 0 -5.15 CISPEP 5 LYS B 200 PRO B 201 0 -0.45 CISPEP 6 GLU B 300 PRO B 301 0 -22.52 CISPEP 7 PRO B 301 PRO B 302 0 -29.05 CISPEP 8 PRO B 302 ASN B 303 0 8.30 CISPEP 9 ASN B 303 TRP B 304 0 2.62
SITE 1 AC1 9 LYS B 148 LYS B 155 HIS B 156 HOH B 594 SITE 2 AC1 9 HOH B 660 HOH B 717 HOH B 722 HOH B 789 SITE 3 AC1 9 HOH B 852 SITE 1 AC2 7 LYS A 90 HIS A 116 PRO A 117 ASN A 118 SITE 2 AC2 7 LEU A 119 TYR A 281 LYS B 129 SITE 1 AC3 10 VAL B 97 GLY B 127 THR B 128 ARG B 146 SITE 2 AC3 10 LEU B 147 PRO B 196 ASN B 202 PHE B 203 SITE 3 AC3 10 HOH B 603 HOH B 664 SITE 1 AC4 4 HIS B 116 PRO B 117 ASN B 118 LEU B 119 SITE 1 AC5 5 LYS A 148 ILE A 154 LYS A 155 HIS A 156 SITE 2 AC5 5 HOH A 628 SITE 1 AC6 6 LEU B 104 ARG B 160 ILE B 269 TYR B 293 SITE 2 AC6 6 HOH B 637 HOH B 691 SITE 1 AC7 6 LEU A 104 ARG A 160 ILE A 269 TYR A 293 SITE 2 AC7 6 HOH A 629 HOH A 639 SITE 1 AC8 3 HIS B 206 ASN B 209 HOH B 678 SITE 1 AC9 7 SER A 157 LEU A 159 TYR A 286 ARG A 290 SITE 2 AC9 7 PRO A 301 PRO A 302 ASN A 303 SITE 1 BC1 7 GLY A 127 THR A 128 ARG A 146 ASN A 202 SITE 2 BC1 7 PHE A 203 HOH A 650 HOH A 748 SITE 1 BC2 3 SER B 99 ARG B 146 VAL B 227 SITE 1 BC3 9 PHE B 102 GLY B 103 LEU B 104 SER B 246 SITE 2 BC3 9 SER B 249 GLU B 296 HOH B 765 HOH B 781 SITE 3 BC3 9 HOH B 872
CRYST1 64.937 66.506 117.495 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015400 0.000000 0.000000 0.00000
SCALE2 0.000000 0.015036 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008511 0.00000