10 20 30 40 50 60 70 80 2H89 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 06-JUN-06 2H89
TITLE AVIAN RESPIRATORY COMPLEX II WITH MALONATE BOUND
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 1.3.5.1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SUCCINATE DEHYDROGENASE IP SUBUNIT; COMPND 7 CHAIN: B; COMPND 8 EC: 1.3.5.1; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SUCCINATE DEHYDROGENASE CYTOCHROME B, LARGE SUBUNIT; COMPND 11 CHAIN: C; COMPND 12 EC: 1.3.5.1; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: SUCCINATE DEHYDROGENASE CYTOCHROME B, SMALL SUBUNIT; COMPND 15 CHAIN: D; COMPND 16 EC: 1.3.5.1
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 7 ORGANISM_COMMON: CHICKEN; SOURCE 8 ORGANISM_TAXID: 9031; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 11 ORGANISM_COMMON: CHICKEN; SOURCE 12 ORGANISM_TAXID: 9031; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 15 ORGANISM_COMMON: CHICKEN; SOURCE 16 ORGANISM_TAXID: 9031
KEYWDS COMPLEX II, MEMBRANE PROTEIN, HEME PROTEIN, IRON SULFUR PROTEIN, KEYWDS 2 CYTOCHROME B, OXIDOREDUCTASE, REDOX ENZYME, RESPIRATORY CHAIN, KEYWDS 3 MALONATE, UBIQUINONE
EXPDTA X-RAY DIFFRACTION
AUTHOR L.S.HUANG,J.T.SHEN,A.C.WANG,E.A.BERRY
REVDAT 4 29-OCT-14 2H89 1 HETNAM HETSYN VERSN REVDAT 3 24-FEB-09 2H89 1 VERSN REVDAT 2 31-OCT-06 2H89 1 JRNL REVDAT 1 20-JUN-06 2H89 0
JRNL AUTH L.S.HUANG,J.T.SHEN,A.C.WANG,E.A.BERRY JRNL TITL CRYSTALLOGRAPHIC STUDIES OF THE BINDING OF LIGANDS TO THE JRNL TITL 2 DICARBOXYLATE SITE OF COMPLEX II, AND THE IDENTITY OF THE JRNL TITL 3 LIGAND IN THE JRNL REF BIOCHIM.BIOPHYS.ACTA V.1757 1073 JRNL REFN ISSN 0006-3002 JRNL PMID 16935256 JRNL DOI 10.1016/J.BBABIO.2006.06.015
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.S.HUANG,G.SUN,D.COBESSI,A.C.WANG,J.T.SHEN,E.Y.TUNG, REMARK 1 AUTH 2 V.E.ANDERSON,E.A.BERRY REMARK 1 TITL 3-NITROPROPIONIC ACID IS A SUICIDE INHIBITOR OF REMARK 1 TITL 2 MITOCHONDRIAL RESPIRATION THAT, UPON OXIDATION BY COMPLEX REMARK 1 TITL 3 II, FORMS A COVALENT ADDUCT WITH A CATALYTIC BASE ARGININE REMARK 1 TITL 4 IN THE ACTIVE SITE OF THE ENZYME. REMARK 1 REF J.BIOL.CHEM. V. 281 5965 2006 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 16371358 REMARK 1 DOI 10.1074/JBC.M511270200 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.S.HUANG,T.M.BORDERS,J.T.SHEN,C.J.WANG,E.A.BERRY REMARK 1 TITL CRYSTALLIZATION OF MITOCHONDRIAL RESPIRATORY COMPLEX II FROM REMARK 1 TITL 2 CHICKEN HEART: A MEMBRANE-PROTEIN COMPLEX DIFFRACTING TO 2.0 REMARK 1 TITL 3 A REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 61 380 2005 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 3 REMARK 1 AUTH F.SUN,X.HUO,Y.ZHAI,A.WANG,J.XU,D.SU,M.BARTLAM,Z.RAO REMARK 1 TITL CRYSTAL STRUCTURE OF MITOCHONDRIAL RESPIRATORY MEMBRANE REMARK 1 TITL 2 PROTEIN COMPLEX II. REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 121 1043 2005 REMARK 1 REFN ISSN 0092-8674
REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 59635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2908 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 48.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2102 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 100 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.037 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8500 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 222 REMARK 3 SOLVENT ATOMS : 580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.89000 REMARK 3 B22 (A**2) : 5.97000 REMARK 3 B33 (A**2) : -12.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.44 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.59 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.000 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.900 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.130 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.390 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.100 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.270 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.26 REMARK 3 BSOL : 60.42 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2H89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB038053.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DCS, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63148 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.6 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 18.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.54500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT OF REMARK 200 PREVIOUS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1YQ3 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 G/L PEG-3350, 25 ML/L REMARK 280 ISOPROPANOL, 15 ML/L PEG-400 0.05 M NA-HEPES, 0.01 M TRIS-HCL, REMARK 280 0.0005 M MALONATE, 0.0005 M MNCL2, 0.0013 M MGCL2, 0.0015 M NA- REMARK 280 AZIDE, 0.00025 M NA-EDTA., PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.26000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.10600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.05900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 146.10600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.26000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.05900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 ILE A 8 REMARK 465 ALA B 1 REMARK 465 GLN B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 LYS B 248 REMARK 465 ALA B 249 REMARK 465 ALA B 250 REMARK 465 ALA B 251 REMARK 465 ALA B 252 REMARK 465 MET C 1 REMARK 465 GLY D 1
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 9 N C O CB OG REMARK 470 ALA B 7 N C O CB REMARK 470 GLU B 247 CG CD OE1 OE2 REMARK 470 SER D 2 OG
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 390 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 87 28.89 -76.65 REMARK 500 ASP A 88 44.96 31.73 REMARK 500 PRO A 116 52.99 -68.71 REMARK 500 ALA A 150 -135.67 49.49 REMARK 500 ASP A 169 26.52 -78.77 REMARK 500 TYR A 216 51.98 -150.65 REMARK 500 ASP A 246 27.89 42.44 REMARK 500 LEU A 247 -8.12 -56.94 REMARK 500 ILE A 257 142.16 -34.17 REMARK 500 CYS A 262 151.67 -45.31 REMARK 500 THR A 265 149.10 -38.67 REMARK 500 ARG A 282 63.29 -100.26 REMARK 500 PHE A 283 -31.59 -39.45 REMARK 500 VAL A 290 -61.53 -100.86 REMARK 500 LYS A 292 -113.59 45.36 REMARK 500 ILE A 308 -72.73 -74.54 REMARK 500 LEU A 325 -35.71 -132.34 REMARK 500 HIS A 326 -13.95 -44.02 REMARK 500 ALA A 348 5.09 -160.27 REMARK 500 VAL A 352 -7.20 -51.83 REMARK 500 HIS A 364 -51.08 -137.19 REMARK 500 ASN A 407 117.56 -164.82 REMARK 500 ALA A 411 13.00 83.71 REMARK 500 PRO A 443 -30.05 -37.91 REMARK 500 ALA A 480 54.67 -170.56 REMARK 500 ALA A 481 -158.82 -98.60 REMARK 500 TRP A 515 54.02 37.18 REMARK 500 TYR A 554 79.64 -159.11 REMARK 500 ASN A 607 110.66 -162.26 REMARK 500 ALA A 617 158.33 177.58 REMARK 500 SER B 9 172.66 -49.15 REMARK 500 ARG B 10 84.48 -150.96 REMARK 500 TRP B 19 136.94 178.68 REMARK 500 LYS B 39 58.68 -118.99 REMARK 500 LEU B 55 -32.52 -145.77 REMARK 500 ASP B 56 77.29 -158.76 REMARK 500 SER B 57 13.96 -61.87 REMARK 500 ARG B 63 153.35 179.92 REMARK 500 SER B 64 -82.80 -156.86 REMARK 500 ILE B 69 -18.53 -143.02 REMARK 500 CYS B 73 21.26 -74.73 REMARK 500 MET B 75 165.91 178.91 REMARK 500 LYS B 109 134.45 176.37 REMARK 500 ASP B 110 -112.04 41.56 REMARK 500 ALA B 182 -72.77 -44.60 REMARK 500 THR B 199 -70.54 -45.02 REMARK 500 HIS C 26 -91.96 -145.08 REMARK 500 SER C 78 61.16 22.41 REMARK 500 ALA C 138 -7.97 -58.13 REMARK 500 TYR D 30 49.56 -150.48 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1095 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH A1126 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH A1252 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH A1285 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH B1142 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH C1268 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH C1339 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH C1564 DISTANCE = 5.38 ANGSTROMS REMARK 525 HOH D1303 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH D1345 DISTANCE = 5.60 ANGSTROMS
REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 HEM C 142 REMARK 610 PEE C 143 REMARK 610 PEE D 105
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 622 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 366 O REMARK 620 2 MET A 367 O 81.7 REMARK 620 3 GLY A 368 O 78.8 68.3 REMARK 620 4 GLU A 397 O 99.3 156.6 88.8 REMARK 620 5 ALA A 399 O 173.9 97.2 95.2 79.2 REMARK 620 6 TYR A 365 OH 73.8 101.9 152.1 100.8 112.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B1002 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 65 SG REMARK 620 2 FES B1002 S1 114.4 REMARK 620 3 FES B1002 S2 112.5 105.1 REMARK 620 4 CYS B 70 SG 99.5 110.5 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B1002 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 73 SG REMARK 620 2 FES B1002 S1 117.1 REMARK 620 3 FES B1002 S2 115.2 105.2 REMARK 620 4 CYS B 85 SG 84.7 126.4 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B1003 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 158 SG REMARK 620 2 SF4 B1003 S1 104.7 REMARK 620 3 SF4 B1003 S2 111.7 107.2 REMARK 620 4 SF4 B1003 S4 119.5 104.8 108.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B1003 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 161 SG REMARK 620 2 SF4 B1003 S2 108.4 REMARK 620 3 SF4 B1003 S3 100.7 90.4 REMARK 620 4 SF4 B1003 S4 137.8 108.8 98.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B1003 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 164 SG REMARK 620 2 SF4 B1003 S1 122.1 REMARK 620 3 SF4 B1003 S2 116.5 107.9 REMARK 620 4 SF4 B1003 S3 104.7 110.5 90.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B1004 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 168 SG REMARK 620 2 F3S B1004 S2 106.1 REMARK 620 3 F3S B1004 S3 110.8 100.3 REMARK 620 4 F3S B1004 S4 108.4 120.3 110.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 253 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 191 O REMARK 620 2 HOH B1081 O 97.9 REMARK 620 3 HOH B1047 O 133.9 87.0 REMARK 620 4 HOH B1167 O 58.5 155.2 103.8 REMARK 620 5 ASP B 193 O 95.4 93.5 130.2 96.1 REMARK 620 6 ASP B 196 O 130.9 130.8 65.2 73.8 77.9 REMARK 620 7 THR B 199 OG1 70.0 117.2 67.2 50.9 147.0 89.5 REMARK 620 8 HOH B1163 O 50.4 59.4 96.9 96.7 125.7 155.9 67.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B1004 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 215 SG REMARK 620 2 F3S B1004 S1 101.9 REMARK 620 3 F3S B1004 S2 119.8 118.4 REMARK 620 4 F3S B1004 S3 115.8 96.3 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S B1004 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 221 SG REMARK 620 2 F3S B1004 S1 101.8 REMARK 620 3 F3S B1004 S3 124.5 94.0 REMARK 620 4 F3S B1004 S4 111.8 112.9 109.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B1003 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 225 SG REMARK 620 2 SF4 B1003 S1 135.1 REMARK 620 3 SF4 B1003 S3 103.8 113.0 REMARK 620 4 SF4 B1003 S4 92.5 105.6 99.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 142 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 98 NE2 REMARK 620 2 HEM C 142 NA 89.6 REMARK 620 3 HEM C 142 NB 92.4 86.7 REMARK 620 4 HEM C 142 NC 87.6 177.2 93.0 REMARK 620 5 HEM C 142 ND 88.7 91.7 178.0 88.7 REMARK 620 6 HIS D 46 NE2 173.8 85.6 91.3 97.2 87.4 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 622 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 1015 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 1016 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 1017 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BHG C 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEE C 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL C 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL C 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL C 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL C 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL C 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL C 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEE D 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL D 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL D 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL D 142
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FBW RELATED DB: PDB REMARK 900 AVIAN COMPLEX II WITH CARBOXIN BOUND REMARK 900 RELATED ID: 1YQ3 RELATED DB: PDB REMARK 900 AVIAN COMPLEX II FROM ORTHORHOMBIC CRYSTAL FORM REMARK 900 RELATED ID: 1YQ4 RELATED DB: PDB REMARK 900 AVIAN COMPLEX II, 3-NITROPROPIONIC ACID-MODIFIED REMARK 900 RELATED ID: 1ZOY RELATED DB: PDB REMARK 900 PORCINE COMPLEX II FROM ORTHORHOMBIC CRYSTAL REMARK 900 RELATED ID: 1ZP0 RELATED DB: PDB REMARK 900 PORCINE COMPLEX II WITH 3-NITROPROPIONATE AND TTFA BOUND
REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE 1-71 OF SUCCINATE DEHYDROGENASE FP SUBUNIT DOES NOT REMARK 999 MATCH TO ANY SEQUENCE IN THE DATABASE. REMARK 999 THE SEQUENCE OF SUCCINATE DEHYDROGENASE CYTOCHROME B, LARGE REMARK 999 SUBUNIT IS NOT AVAILABLE IN ANY OF THE DATABASE SEQUENCES AT REMARK 999 THE TIME OF PROCESSING.
DBREF 2H89 A 1 621 UNP Q9YHT1 DHSA_CHICK 45 665 DBREF 2H89 B 1 252 UNP Q9YHT2 DHSB_CHICK 39 290 DBREF 2H89 C 1 140 PDB 2H89 2H88 1 140 DBREF 2H89 D 1 103 UNP Q5ZIS0 Q5ZIS0_CHICK 55 157
SEQADV 2H89 ARG A 501 UNP Q9YHT1 CYS 545 CONFLICT SEQADV 2H89 LEU A 556 UNP Q9YHT1 PHE 600 CONFLICT SEQADV 2H89 GLU A 560 UNP Q9YHT1 ASP 604 CONFLICT
SEQRES 1 A 621 SER THR LYS VAL SER ASP SER ILE SER THR GLN TYR PRO SEQRES 2 A 621 VAL VAL ASP HIS GLU PHE ASP ALA VAL VAL VAL GLY ALA SEQRES 3 A 621 GLY GLY ALA GLY LEU ARG ALA ALA PHE GLY LEU SER GLU SEQRES 4 A 621 ALA GLY PHE ASN THR ALA CYS VAL THR LYS LEU PHE PRO SEQRES 5 A 621 THR ARG SER HIS THR VAL ALA ALA GLN GLY GLY ILE ASN SEQRES 6 A 621 ALA ALA LEU GLY ASN MET GLU ASP ASP ASN TRP ARG TRP SEQRES 7 A 621 HIS PHE TYR ASP THR VAL LYS GLY SER ASP TRP LEU GLY SEQRES 8 A 621 ASP GLN ASP ALA ILE HIS TYR MET THR GLU GLN ALA PRO SEQRES 9 A 621 ALA ALA VAL ILE GLU LEU GLU ASN TYR GLY MET PRO PHE SEQRES 10 A 621 SER ARG THR GLU GLU GLY LYS ILE TYR GLN ARG ALA PHE SEQRES 11 A 621 GLY GLY GLN SER LEU GLN PHE GLY LYS GLY GLY GLN ALA SEQRES 12 A 621 HIS ARG CYS CYS CYS VAL ALA ASP ARG THR GLY HIS SER SEQRES 13 A 621 LEU LEU HIS THR LEU TYR GLY ARG SER LEU ARG TYR ASP SEQRES 14 A 621 THR SER TYR PHE VAL GLU TYR PHE ALA LEU ASP LEU LEU SEQRES 15 A 621 MET GLU ASN GLY GLU CYS ARG GLY VAL ILE ALA LEU CYS SEQRES 16 A 621 ILE GLU ASP GLY THR ILE HIS ARG PHE ARG ALA LYS ASN SEQRES 17 A 621 THR VAL ILE ALA THR GLY GLY TYR GLY ARG THR TYR PHE SEQRES 18 A 621 SER CYS THR SER ALA HIS THR SER THR GLY ASP GLY THR SEQRES 19 A 621 ALA MET VAL THR ARG ALA GLY LEU PRO CYS GLN ASP LEU SEQRES 20 A 621 GLU PHE VAL GLN PHE HIS PRO THR GLY ILE TYR GLY ALA SEQRES 21 A 621 GLY CYS LEU ILE THR GLU GLY CYS ARG GLY GLU GLY GLY SEQRES 22 A 621 ILE LEU ILE ASN SER GLN GLY GLU ARG PHE MET GLU ARG SEQRES 23 A 621 TYR ALA PRO VAL ALA LYS ASP LEU ALA SER ARG ASP VAL SEQRES 24 A 621 VAL SER ARG SER MET THR ILE GLU ILE ARG GLU GLY ARG SEQRES 25 A 621 GLY CYS GLY PRO GLU LYS ASP HIS VAL TYR LEU GLN LEU SEQRES 26 A 621 HIS HIS LEU PRO PRO GLN GLN LEU ALA THR ARG LEU PRO SEQRES 27 A 621 GLY ILE SER GLU THR ALA MET ILE PHE ALA GLY VAL ASP SEQRES 28 A 621 VAL THR LYS GLU PRO ILE PRO VAL LEU PRO THR VAL HIS SEQRES 29 A 621 TYR ASN MET GLY GLY ILE PRO THR ASN TYR LYS GLY GLN SEQRES 30 A 621 VAL ILE THR HIS VAL ASN GLY GLU ASP LYS VAL VAL PRO SEQRES 31 A 621 GLY LEU TYR ALA CYS GLY GLU ALA ALA SER ALA SER VAL SEQRES 32 A 621 HIS GLY ALA ASN ARG LEU GLY ALA ASN SER LEU LEU ASP SEQRES 33 A 621 LEU VAL VAL PHE GLY ARG ALA CYS ALA LEU THR ILE ALA SEQRES 34 A 621 GLU THR CYS LYS PRO GLY GLU PRO VAL PRO SER ILE LYS SEQRES 35 A 621 PRO ASN ALA GLY GLU GLU SER VAL ALA ASN LEU ASP LYS SEQRES 36 A 621 LEU ARG PHE ALA ASP GLY THR ILE ARG THR SER GLU ALA SEQRES 37 A 621 ARG LEU ASN MET GLN LYS THR MET GLN SER HIS ALA ALA SEQRES 38 A 621 VAL PHE ARG THR GLY SER ILE LEU GLN GLU GLY CYS GLU SEQRES 39 A 621 LYS LEU SER GLN ILE TYR ARG ASP LEU ALA HIS LEU LYS SEQRES 40 A 621 THR PHE ASP ARG GLY ILE VAL TRP ASN THR ASP LEU VAL SEQRES 41 A 621 GLU THR LEU GLU LEU GLN ASN LEU MET LEU CYS ALA LEU SEQRES 42 A 621 GLN THR ILE TYR GLY ALA GLU ALA ARG LYS GLU SER ARG SEQRES 43 A 621 GLY ALA HIS ALA ARG GLU ASP TYR LYS LEU ARG ILE ASP SEQRES 44 A 621 GLU PHE ASP TYR SER LYS PRO LEU GLN GLY GLN GLN LYS SEQRES 45 A 621 ARG PRO PHE GLU GLU HIS TRP ARG LYS HIS THR LEU SER SEQRES 46 A 621 TYR VAL ASP VAL LYS SER GLY LYS VAL THR LEU LYS TYR SEQRES 47 A 621 ARG PRO VAL ILE ASP ARG THR LEU ASN GLU GLU ASP CYS SEQRES 48 A 621 SER SER VAL PRO PRO ALA ILE ARG SER TYR SEQRES 1 B 252 ALA GLN THR ALA ALA ALA ALA THR SER ARG ILE LYS LYS SEQRES 2 B 252 PHE SER ILE TYR ARG TRP ASP PRO ASP LYS PRO GLY ASP SEQRES 3 B 252 LYS PRO ARG MET GLN THR TYR GLU VAL ASP LEU ASN LYS SEQRES 4 B 252 CYS GLY PRO MET VAL LEU ASP ALA LEU ILE LYS ILE LYS SEQRES 5 B 252 ASN GLU LEU ASP SER THR LEU THR PHE ARG ARG SER CYS SEQRES 6 B 252 ARG GLU GLY ILE CYS GLY SER CYS ALA MET ASN ILE ALA SEQRES 7 B 252 GLY GLY ASN THR LEU ALA CYS THR LYS LYS ILE ASP PRO SEQRES 8 B 252 ASP LEU SER LYS THR THR LYS ILE TYR PRO LEU PRO HIS SEQRES 9 B 252 MET TYR VAL VAL LYS ASP LEU VAL PRO ASP LEU SER ASN SEQRES 10 B 252 PHE TYR ALA GLN TYR LYS SER ILE GLU PRO TYR LEU LYS SEQRES 11 B 252 LYS LYS ASP GLU SER LYS GLN GLY LYS GLU GLN TYR LEU SEQRES 12 B 252 GLN SER ILE GLU ASP ARG GLN LYS LEU ASP GLY LEU TYR SEQRES 13 B 252 GLU CYS ILE LEU CYS ALA CYS CYS SER THR SER CYS PRO SEQRES 14 B 252 SER TYR TRP TRP ASN GLY ASP LYS TYR LEU GLY PRO ALA SEQRES 15 B 252 VAL LEU MET GLN ALA TYR ARG TRP MET ILE ASP SER ARG SEQRES 16 B 252 ASP ASP TYR THR GLU GLU ARG LEU ALA GLN LEU GLN ASP SEQRES 17 B 252 PRO PHE SER LEU TYR ARG CYS HIS THR ILE MET ASN CYS SEQRES 18 B 252 THR ARG THR CYS PRO LYS GLY LEU ASN PRO GLY LYS ALA SEQRES 19 B 252 ILE ALA GLU ILE LYS LYS MET MET ALA THR TYR LYS GLU SEQRES 20 B 252 LYS ALA ALA ALA ALA SEQRES 1 C 140 MET ALA THR THR ALA LYS GLU GLU MET ALA ARG PHE TRP SEQRES 2 C 140 GLU LYS ASN THR LYS SER SER ARG PRO LEU SER PRO HIS SEQRES 3 C 140 ILE SER ILE TYR LYS TRP SER LEU PRO MET ALA MET SER SEQRES 4 C 140 ILE THR HIS ARG GLY THR GLY VAL ALA LEU SER LEU GLY SEQRES 5 C 140 VAL SER LEU PHE SER LEU ALA ALA LEU LEU LEU PRO GLU SEQRES 6 C 140 GLN PHE PRO HIS TYR VAL ALA VAL VAL LYS SER LEU SER SEQRES 7 C 140 LEU SER PRO ALA LEU ILE TYR SER ALA LYS PHE ALA LEU SEQRES 8 C 140 VAL PHE PRO LEU SER TYR HIS THR TRP ASN GLY ILE ARG SEQRES 9 C 140 HIS LEU VAL TRP ASP MET GLY LYS GLY PHE LYS LEU SER SEQRES 10 C 140 GLN VAL GLU GLN SER GLY VAL VAL VAL LEU ILE LEU THR SEQRES 11 C 140 LEU LEU SER SER ALA ALA ILE ALA SER GLU SEQRES 1 D 103 GLY SER SER LYS ALA ALA SER LEU HIS TRP THR SER GLU SEQRES 2 D 103 ARG ALA VAL SER ALA LEU LEU LEU GLY LEU LEU PRO ALA SEQRES 3 D 103 ALA TYR LEU TYR PRO GLY PRO ALA VAL ASP TYR SER LEU SEQRES 4 D 103 ALA ALA ALA LEU THR LEU HIS GLY HIS TRP GLY LEU GLY SEQRES 5 D 103 GLN VAL ILE THR ASP TYR VAL HIS GLY ASP THR PRO ILE SEQRES 6 D 103 LYS VAL ALA ASN THR GLY LEU TYR VAL LEU SER ALA ILE SEQRES 7 D 103 THR PHE THR GLY LEU CYS TYR PHE ASN TYR TYR ASP VAL SEQRES 8 D 103 GLY ILE CYS LYS ALA VAL ALA MET LEU TRP SER ILE
HET K A 622 1 HET FAD A1001 53 HET MLI A1002 7 HET UNL A1003 1 HET UNL A1004 1 HET UNL A1005 1 HET UNL A1006 1 HET UNL A1007 1 HET UNL A1008 1 HET UNL A1009 1 HET UNL A1010 1 HET UNL A1011 1 HET UNL A1012 1 HET UNL A1013 1 HET UNL A1014 1 HET UNL A1015 1 HET UNL A1016 1 HET UNL A1017 1 HET K B 253 1 HET FES B1002 4 HET SF4 B1003 8 HET F3S B1004 7 HET UNL B1005 6 HET UNL B1006 1 HET UNL B1007 1 HET UNL B1008 1 HET UNL B1009 1 HET UNL B1010 1 HET UNL B1011 1 HET UNL B1012 1 HET UNL B1013 1 HET UNL B1014 1 HET BHG C 141 18 HET HEM C 142 41 HET PEE C 143 11 HET UNL C 144 2 HET UNL C 145 1 HET UNL C 146 1 HET UNL C 147 1 HET UNL C 148 2 HET UNL C 149 1 HET UNL C 150 1 HET UNL C 151 1 HET UNL C 152 1 HET PEE D 105 24 HET UNL D 109 1 HET UNL D 110 1 HET UNL D 122 1 HET UNL D 125 1 HET UNL D 132 1 HET UNL D 142 1
HETNAM K POTASSIUM ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM MLI MALONATE ION HETNAM UNL UNKNOWN LIGAND HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM SF4 IRON/SULFUR CLUSTER HETNAM F3S FE3-S4 CLUSTER HETNAM BHG 2-HEXYLOXY-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM PEE 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
HETSYN HEM HEME HETSYN PEE DOPE
FORMUL 5 K 2(K 1+) FORMUL 6 FAD C27 H33 N9 O15 P2 FORMUL 7 MLI C3 H2 O4 2- FORMUL 24 FES FE2 S2 FORMUL 25 SF4 FE4 S4 FORMUL 26 F3S FE3 S4 FORMUL 37 BHG C12 H24 O6 FORMUL 38 HEM C34 H32 FE N4 O4 FORMUL 39 PEE 2(C41 H83 N O8 P 1+) FORMUL 56 HOH *580(H2 O)
HELIX 1 1 GLY A 27 ALA A 40 1 14 HELIX 2 2 PHE A 51 ALA A 60 5 10 HELIX 3 3 ASN A 75 SER A 87 1 13 HELIX 4 4 ASP A 92 GLY A 114 1 23 HELIX 5 5 ARG A 152 LEU A 166 1 15 HELIX 6 6 TYR A 216 TYR A 220 5 5 HELIX 7 7 GLY A 231 ARG A 239 1 9 HELIX 8 8 GLU A 266 GLU A 271 1 6 HELIX 9 9 PHE A 283 ALA A 288 1 6 HELIX 10 10 ALA A 291 ALA A 295 5 5 HELIX 11 11 SER A 296 GLU A 310 1 15 HELIX 12 12 PRO A 329 LEU A 337 1 9 HELIX 13 13 LEU A 337 GLY A 349 1 13 HELIX 14 14 ASN A 412 CYS A 432 1 21 HELIX 15 15 GLY A 446 PHE A 458 1 13 HELIX 16 16 THR A 465 ALA A 480 1 16 HELIX 17 17 THR A 485 LEU A 503 1 19 HELIX 18 18 ASN A 516 ARG A 542 1 27 HELIX 19 19 PRO A 574 HIS A 578 5 5 HELIX 20 20 ASN B 38 CYS B 40 5 3 HELIX 21 21 MET B 43 LEU B 55 1 13 HELIX 22 22 LEU B 115 SER B 124 1 10 HELIX 23 23 SER B 145 LYS B 151 1 7 HELIX 24 24 CYS B 164 SER B 167 5 4 HELIX 25 25 CYS B 168 GLY B 175 1 8 HELIX 26 26 GLY B 180 ILE B 192 1 13 HELIX 27 27 TYR B 198 GLN B 205 1 8 HELIX 28 28 MET B 219 CYS B 225 1 7 HELIX 29 29 ASN B 230 TYR B 245 1 16 HELIX 30 30 THR C 4 THR C 17 1 14 HELIX 31 31 SER C 33 LEU C 63 1 31 HELIX 32 32 GLN C 66 SER C 76 1 11 HELIX 33 33 SER C 80 ASP C 109 1 30 HELIX 34 34 LYS C 115 ALA C 138 1 24 HELIX 35 35 LYS D 4 GLY D 22 1 19 HELIX 36 36 LEU D 23 TYR D 30 1 8 HELIX 37 37 GLY D 32 VAL D 59 1 28 HELIX 38 38 GLY D 61 ASP D 90 1 30 HELIX 39 39 GLY D 92 TRP D 101 1 10
SHEET 1 A 6 SER A 171 PHE A 173 0 SHEET 2 A 6 THR A 44 VAL A 47 1 N CYS A 46 O PHE A 173 SHEET 3 A 6 VAL A 14 VAL A 24 1 N VAL A 23 O ALA A 45 SHEET 4 A 6 THR A 200 ILE A 211 1 O ARG A 203 N HIS A 17 SHEET 5 A 6 GLU A 187 CYS A 195 -1 N CYS A 195 O THR A 200 SHEET 6 A 6 TYR A 176 GLU A 184 -1 N LEU A 182 O ARG A 189 SHEET 1 B 6 SER A 171 PHE A 173 0 SHEET 2 B 6 THR A 44 VAL A 47 1 N CYS A 46 O PHE A 173 SHEET 3 B 6 VAL A 14 VAL A 24 1 N VAL A 23 O ALA A 45 SHEET 4 B 6 THR A 200 ILE A 211 1 O ARG A 203 N HIS A 17 SHEET 5 B 6 GLU A 385 ALA A 394 1 O GLY A 391 N THR A 209 SHEET 6 B 6 GLN A 377 VAL A 382 -1 N VAL A 378 O VAL A 389 SHEET 1 C 3 ILE A 64 ASN A 65 0 SHEET 2 C 3 CYS A 146 CYS A 147 -1 O CYS A 147 N ILE A 64 SHEET 3 C 3 GLN A 127 ARG A 128 -1 N ARG A 128 O CYS A 146 SHEET 1 D 3 CYS A 244 GLN A 245 0 SHEET 2 D 3 LYS A 581 ASP A 588 -1 O SER A 585 N CYS A 244 SHEET 3 D 3 LYS A 593 PRO A 600 -1 O THR A 595 N TYR A 586 SHEET 1 E 4 VAL A 250 ILE A 257 0 SHEET 2 E 4 ILE A 357 ASN A 366 -1 O THR A 362 N HIS A 253 SHEET 3 E 4 VAL A 321 GLN A 324 -1 N LEU A 323 O ILE A 357 SHEET 4 E 4 ILE A 274 ILE A 276 -1 N ILE A 274 O GLN A 324 SHEET 1 F 2 ILE A 370 PRO A 371 0 SHEET 2 F 2 ALA A 399 SER A 400 1 O SER A 400 N ILE A 370 SHEET 1 G 2 ILE A 463 ARG A 464 0 SHEET 2 G 2 LEU A 506 LYS A 507 1 O LYS A 507 N ILE A 463 SHEET 1 H 2 PHE A 483 ARG A 484 0 SHEET 2 H 2 ALA A 550 ARG A 551 1 O ALA A 550 N ARG A 484 SHEET 1 I 5 ARG B 29 ASP B 36 0 SHEET 2 I 5 ILE B 11 ARG B 18 -1 N ILE B 16 O GLN B 31 SHEET 3 I 5 THR B 97 TYR B 100 1 O THR B 97 N SER B 15 SHEET 4 I 5 ALA B 74 ILE B 77 -1 N ASN B 76 O TYR B 100 SHEET 5 I 5 GLY B 80 LEU B 83 -1 O THR B 82 N MET B 75 SHEET 1 J 2 VAL B 107 LYS B 109 0 SHEET 2 J 2 VAL B 112 PRO B 113 -1 O VAL B 112 N VAL B 108
SSBOND 1 CYS B 73 CYS B 85 1555 1555 2.75
LINK O ASN A 366 K K A 622 1555 1555 2.55 LINK O MET A 367 K K A 622 1555 1555 2.94 LINK O GLY A 368 K K A 622 1555 1555 2.83 LINK O GLU A 397 K K A 622 1555 1555 2.86 LINK O ALA A 399 K K A 622 1555 1555 2.77 LINK SG CYS B 65 FE2 FES B1002 1555 1555 2.15 LINK SG CYS B 70 FE2 FES B1002 1555 1555 2.22 LINK SG CYS B 73 FE1 FES B1002 1555 1555 1.97 LINK SG CYS B 85 FE1 FES B1002 1555 1555 2.12 LINK SG CYS B 158 FE3 SF4 B1003 1555 1555 2.06 LINK SG CYS B 161 FE1 SF4 B1003 1555 1555 2.31 LINK SG CYS B 164 FE4 SF4 B1003 1555 1555 2.07 LINK SG CYS B 168 FE4 F3S B1004 1555 1555 2.14 LINK O MET B 191 K K B 253 1555 1555 2.88 LINK SG CYS B 215 FE1 F3S B1004 1555 1555 2.22 LINK SG CYS B 221 FE3 F3S B1004 1555 1555 2.48 LINK SG CYS B 225 FE2 SF4 B1003 1555 1555 2.44 LINK NE2 HIS C 98 FE HEM C 142 1555 1555 2.02 LINK NE2 HIS D 46 FE HEM C 142 1555 1555 2.04 LINK K K B 253 O HOH B1081 1555 1555 2.81 LINK K K B 253 O HOH B1047 1555 1555 2.75 LINK K K B 253 O HOH B1167 1555 1555 2.92 LINK C8M FAD A1001 NE2 HIS A 56 1555 1555 1.42 LINK O ASP B 193 K K B 253 1555 1555 3.01 LINK O ASP B 196 K K B 253 1555 1555 3.10 LINK OG1 THR B 199 K K B 253 1555 1555 3.12 LINK OH TYR A 365 K K A 622 1555 1555 3.17 LINK K K B 253 O HOH B1163 1555 1555 3.43
CISPEP 1 ALA A 401 SER A 402 0 -1.53
SITE 1 AC1 6 TYR A 365 ASN A 366 MET A 367 GLY A 368 SITE 2 AC1 6 GLU A 397 ALA A 399 SITE 1 AC2 40 GLY A 25 ALA A 26 GLY A 27 GLY A 28 SITE 2 AC2 40 ALA A 29 THR A 48 LYS A 49 LEU A 50 SITE 3 AC2 40 SER A 55 HIS A 56 THR A 57 ALA A 59 SITE 4 AC2 40 ALA A 60 GLN A 61 GLY A 62 GLY A 63 SITE 5 AC2 40 TYR A 176 PHE A 177 ALA A 178 ALA A 212 SITE 6 AC2 40 THR A 213 GLY A 214 THR A 224 ASP A 232 SITE 7 AC2 40 LEU A 263 HIS A 364 TYR A 365 GLY A 396 SITE 8 AC2 40 GLU A 397 ARG A 408 ALA A 411 ASN A 412 SITE 9 AC2 40 SER A 413 LEU A 414 LEU A 417 MLI A1002 SITE 10 AC2 40 HOH A1020 HOH A1029 HOH A1035 HOH A1099 SITE 1 AC3 9 GLY A 62 HIS A 253 THR A 265 GLU A 266 SITE 2 AC3 9 ARG A 297 HIS A 364 ARG A 408 ALA A 411 SITE 3 AC3 9 FAD A1001 SITE 1 AC4 1 HIS A 326 SITE 1 AC5 1 GLU A 540 SITE 1 AC6 2 ASP A 603 ARG A 604 SITE 1 AC7 1 ALA A 429 SITE 1 AC8 2 PRO A 330 GLN A 331 SITE 1 AC9 1 UNL A1010 SITE 1 BC1 2 TRP A 78 UNL A1009 SITE 1 BC2 3 SER A 620 TYR A 621 HOH A1277 SITE 1 BC3 3 ARG A 309 GLU A 310 GLY A 311 SITE 1 BC4 1 PRO A 329 SITE 1 BC5 3 PHE A 137 SER A 612 VAL A 614 SITE 1 BC6 1 GLY A 241 SITE 1 BC7 7 MET B 191 ASP B 193 ASP B 196 THR B 199 SITE 2 BC7 7 HOH B1047 HOH B1081 HOH B1167 SITE 1 BC8 9 SER B 64 CYS B 65 ARG B 66 GLY B 68 SITE 2 BC8 9 CYS B 70 GLY B 71 SER B 72 CYS B 73 SITE 3 BC8 9 CYS B 85 SITE 1 BC9 6 CYS B 158 CYS B 161 ALA B 162 CYS B 164 SITE 2 BC9 6 MET B 185 CYS B 225 SITE 1 CC1 10 CYS B 168 SER B 170 TYR B 178 CYS B 215 SITE 2 CC1 10 HIS B 216 THR B 217 ILE B 218 MET B 219 SITE 3 CC1 10 ASN B 220 CYS B 221 SITE 1 CC2 3 ILE B 11 LYS B 13 LEU B 93 SITE 1 CC3 4 TRP B 173 UNL B1007 UNL C 145 TYR D 58 SITE 1 CC4 4 ILE B 218 UNL B1006 UNL C 144 UNL C 145 SITE 1 CC5 1 HIS B 104 SITE 1 CC6 1 LYS B 177 SITE 1 CC7 1 GLU A 121 SITE 1 CC8 4 ASP B 208 PRO B 209 ALA D 6 HOH D1390 SITE 1 CC9 1 LYS B 139 SITE 1 DC1 9 ARG B 223 LYS C 31 TRP C 32 SER C 33 SITE 2 DC1 9 LEU C 34 PRO C 35 GLU C 120 TYR D 88 SITE 3 DC1 9 TYR D 89 SITE 1 DC2 12 HIS B 216 HIS C 42 ARG C 43 GLY C 46 SITE 2 DC2 12 VAL C 47 LEU C 49 SER C 50 HIS C 98 SITE 3 DC2 12 UNL C 146 HIS D 46 GLY D 50 LEU D 51 SITE 1 DC3 2 SER C 96 LEU D 21 SITE 1 DC4 2 UNL B1007 MET C 36 SITE 1 DC5 4 UNL B1006 UNL B1007 UNL C 146 HOH C1145 SITE 1 DC6 4 HEM C 142 UNL C 145 HOH C1003 HOH C1145 SITE 1 DC7 1 PHE C 56 SITE 1 DC8 2 GLU C 8 HOH C1375 SITE 1 DC9 1 ALA C 59 SITE 1 EC1 4 ALA D 27 TYR D 28 VAL D 97 TRP D 101 SITE 1 EC2 3 HIS D 9 HOH D1276 HOH D1519 SITE 1 EC3 2 ALA D 41 HOH D1379 SITE 1 EC4 2 TYR D 30 PRO D 31
CRYST1 70.520 84.118 292.212 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014180 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011888 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003422 0.00000