10 20 30 40 50 60 70 80 2H80 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIPID BINDING PROTEIN 06-JUN-06 2H80
TITLE NMR STRUCTURES OF SAM DOMAIN OF DELETED IN LIVER CANCER 2 TITLE 2 (DLC2)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAR-RELATED LIPID TRANSFER PROTEIN 13; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SAM DOMAIN; COMPND 5 SYNONYM: DELETED IN LIVER CANCER PROTEIN 2, DLC2, STARD13, COMPND 6 START DOMAIN-CONTAINING PROTEIN 13, 46H23.2, RHO GTPASE- COMPND 7 ACTIVATING PROTEIN; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-32
KEYWDS HELICAL BUNDLE, LIPID BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.Y.LI,K.L.FUNG,D.Y.JIN,S.S.CHUNG,B.C.KO,H.Z.SUN
REVDAT 2 24-FEB-09 2H80 1 VERSN REVDAT 1 15-MAY-07 2H80 0
JRNL AUTH H.LI,K.L.FUNG,D.Y.JIN,S.S.CHUNG,Y.P.CHING,I.O.NG, JRNL AUTH 2 K.H.SZE,B.C.KO,H.SUN JRNL TITL SOLUTION STRUCTURES, DYNAMICS, AND LIPID-BINDING JRNL TITL 2 OF THE STERILE ALPHA-MOTIF DOMAIN OF THE DELETED JRNL TITL 3 IN LIVER CANCER 2 JRNL REF PROTEINS V. 67 1154 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17380510 JRNL DOI 10.1002/PROT.21361
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7 REMARK 3 AUTHORS : CASE, D.A. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS BASED ON 1098 NOE- REMARK 3 DERIVED DISTANCE CONSTRAINTS AND 104 ANGEL CONSTRAINTS FROM REMARK 3 TALOS
REMARK 4 REMARK 4 2H80 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB038044.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : 20MM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM 15N, 13C LABELLED, 20MM REMARK 210 PHOSPHATE BUFFER, PH 7.1, REMARK 210 0.05% NAN3, 4MM DTT; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1, SPARKY 3.110, REMARK 210 CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 15 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 6 -74.14 -80.82 REMARK 500 1 SER A 8 73.14 -107.81 REMARK 500 1 VAL A 12 81.70 -154.12 REMARK 500 1 SER A 16 38.10 -71.54 REMARK 500 1 ASP A 55 9.93 -67.95 REMARK 500 1 SER A 79 23.20 46.41 REMARK 500 2 SER A 16 1.89 -67.60 REMARK 500 3 SER A 16 26.89 -74.67 REMARK 500 3 ASN A 48 76.95 54.70 REMARK 500 3 ASP A 55 44.09 -74.74 REMARK 500 4 VAL A 12 84.07 -168.58 REMARK 500 4 SER A 16 24.08 -68.34 REMARK 500 4 HIS A 56 79.52 34.15 REMARK 500 4 ASP A 57 84.41 -66.34 REMARK 500 5 LEU A 11 42.47 -148.95 REMARK 500 5 LEU A 59 -168.18 -79.11 REMARK 500 6 VAL A 12 79.95 48.20 REMARK 500 6 ASN A 48 84.81 58.00 REMARK 500 6 CYS A 68 3.56 -69.65 REMARK 500 7 HIS A 3 10.38 55.10 REMARK 500 7 HIS A 6 -42.89 -145.19 REMARK 500 7 VAL A 12 83.26 -153.22 REMARK 500 7 SER A 16 5.35 -65.15 REMARK 500 7 SER A 43 23.56 49.89 REMARK 500 7 ASN A 48 71.78 51.16 REMARK 500 7 HIS A 56 25.17 46.14 REMARK 500 7 LEU A 59 -175.92 -68.62 REMARK 500 8 SER A 8 27.79 48.22 REMARK 500 8 LEU A 11 36.62 -149.09 REMARK 500 8 SER A 16 25.08 -74.11 REMARK 500 8 ASN A 48 74.22 54.69 REMARK 500 8 SER A 79 12.48 57.42 REMARK 500 9 HIS A 4 -78.57 -78.01 REMARK 500 9 VAL A 12 88.21 -154.05 REMARK 500 9 ARG A 14 -10.44 -142.29 REMARK 500 9 SER A 16 40.59 -76.51 REMARK 500 9 ASN A 48 75.77 51.93 REMARK 500 9 ASP A 55 39.83 -74.69 REMARK 500 9 HIS A 56 79.43 -67.82 REMARK 500 9 GLU A 60 101.48 -55.73 REMARK 500 10 HIS A 6 84.76 -68.25 REMARK 500 10 SER A 9 20.34 -144.86 REMARK 500 10 LEU A 11 52.16 -144.23 REMARK 500 10 SER A 16 28.95 -70.39 REMARK 500 10 ASN A 48 70.33 53.82 REMARK 500 10 ASP A 57 98.78 -63.48 REMARK 500 11 HIS A 3 -65.93 -124.95 REMARK 500 11 VAL A 12 88.72 -157.37 REMARK 500 11 SER A 16 41.85 -73.96 REMARK 500 11 ASN A 48 78.18 58.99 REMARK 500 11 ASP A 55 71.76 -69.80 REMARK 500 11 HIS A 56 55.77 39.28 REMARK 500 11 GLU A 60 91.59 -69.17 REMARK 500 12 HIS A 4 -52.56 -127.40 REMARK 500 12 HIS A 5 25.26 45.98 REMARK 500 12 HIS A 6 66.85 -103.97 REMARK 500 12 VAL A 12 78.97 41.13 REMARK 500 12 ASN A 48 84.21 62.07 REMARK 500 12 HIS A 56 32.61 -74.49 REMARK 500 12 ASP A 57 -162.97 -76.90 REMARK 500 13 VAL A 12 79.35 43.46 REMARK 500 13 ARG A 14 -59.59 -134.98 REMARK 500 13 SER A 16 2.06 -64.97 REMARK 500 13 HIS A 56 39.41 -72.12 REMARK 500 13 ASP A 57 43.73 -74.58 REMARK 500 13 SER A 79 69.34 34.48 REMARK 500 14 VAL A 12 72.13 34.80 REMARK 500 14 SER A 16 14.62 50.44 REMARK 500 14 ASN A 48 79.75 48.82 REMARK 500 14 ASP A 55 34.90 -68.78 REMARK 500 14 HIS A 56 74.50 50.01 REMARK 500 15 VAL A 12 78.91 51.04 REMARK 500 16 SER A 9 44.63 -76.26 REMARK 500 16 ARG A 14 -64.78 -133.42 REMARK 500 16 ASN A 48 71.37 53.89 REMARK 500 16 LEU A 59 -75.44 -90.41 REMARK 500 17 VAL A 12 74.65 47.22 REMARK 500 17 ARG A 14 -60.85 -100.61 REMARK 500 18 HIS A 6 97.06 -65.34 REMARK 500 18 VAL A 12 76.92 52.56 REMARK 500 18 ARG A 14 -49.99 -145.71 REMARK 500 18 ASN A 48 79.13 49.02 REMARK 500 18 HIS A 56 49.77 39.40 REMARK 500 19 VAL A 12 74.33 43.72 REMARK 500 19 ASN A 48 70.27 52.71 REMARK 500 19 HIS A 56 45.17 -75.39 REMARK 500 19 GLU A 60 86.02 -69.37 REMARK 500 20 HIS A 4 17.51 52.75 REMARK 500 20 LEU A 11 53.26 -152.15 REMARK 500 20 SER A 16 20.43 -79.63 REMARK 500 20 ASN A 48 76.60 54.23 REMARK 500 20 ASP A 57 104.48 -55.86 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2H80 A 17 81 UNP Q9Y3M8 STA13_HUMAN 56 120
SEQADV 2H80 MET A 1 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2H80 HIS A 2 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2H80 HIS A 3 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2H80 HIS A 4 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2H80 HIS A 5 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2H80 HIS A 6 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2H80 HIS A 7 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2H80 SER A 8 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2H80 SER A 9 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2H80 GLY A 10 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2H80 LEU A 11 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2H80 VAL A 12 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2H80 PRO A 13 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2H80 ARG A 14 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2H80 GLY A 15 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2H80 SER A 16 UNP Q9Y3M8 EXPRESSION TAG
SEQRES 1 A 81 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 81 ARG GLY SER GLN GLU ILE GLU ALA LYS GLU ALA CYS ASP SEQRES 3 A 81 TRP LEU ARG ALA ALA GLY PHE PRO GLN TYR ALA GLN LEU SEQRES 4 A 81 TYR GLU ASP SER GLN PHE PRO ILE ASN ILE VAL ALA VAL SEQRES 5 A 81 LYS ASN ASP HIS ASP PHE LEU GLU LYS ASP LEU VAL GLU SEQRES 6 A 81 PRO LEU CYS ARG ARG LEU ASN THR LEU ASN LYS CYS ALA SEQRES 7 A 81 SER MET LYS
HELIX 1 1 SER A 16 ALA A 31 1 16 HELIX 2 2 PHE A 33 LEU A 39 1 7 HELIX 3 3 ASN A 48 ASN A 54 1 7 HELIX 4 4 LEU A 63 SER A 79 1 17
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000