10 20 30 40 50 60 70 80 2H73 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ELECTRON TRANSPORT 01-JUN-06 2H73
TITLE CRYSTAL STRUCTURE OF THIOREDOXIN MUTANT D43E IN HEXAGONAL (P61) SPACE TITLE 2 GROUP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: TRXA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JF521; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTK100
KEYWDS ALPHA BETA, ELECTRON TRANSPORT
EXPDTA X-RAY DIFFRACTION
AUTHOR J.A.GAVIRA,R.GODOY-RUIZ,B.IBARRA-MOLERO,J.M.SANCHEZ-RUIZ
REVDAT 4 02-MAY-12 2H73 1 COMPND REVDAT 3 13-JUL-11 2H73 1 VERSN REVDAT 2 24-FEB-09 2H73 1 VERSN REVDAT 1 15-MAY-07 2H73 0
JRNL AUTH R.GODOY-RUIZ,J.A.GAVIRA,B.IBARRA-MOLERO,J.M.SANCHEZ-RUIZ JRNL TITL CRYSTAL STRUCTURE OF THIOREDOXIN MUTANT D43E IN HEXAGONAL JRNL TITL 2 (P61) SPACE GROUP JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.GODOY-RUIZ,R.PEREZ-JIMENEZ,R.IBARRA-MOLERO, REMARK 1 AUTH 2 J.M.SANCHEZ-RUIZ REMARK 1 TITL RELATION BETWEEN PROTEIN STABILITY, EVOLUTION AND STRUCTURE, REMARK 1 TITL 2 AS PROBED BY CARBOXYLIC ACID MUTATIONS. REMARK 1 REF J.MOL.BIOL. V. 336 313 2004 REMARK 1 REFN ISSN 0022-2836
REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019, COOT, MOLPROBITY REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 9589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUHGOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.818 REMARK 3 FREE R VALUE TEST SET COUNT : 462 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 667 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1645 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 49.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.36600 REMARK 3 B22 (A**2) : -3.36600 REMARK 3 B33 (A**2) : 5.04900 REMARK 3 B12 (A**2) : -1.68300 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.497 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.307 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.243 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.876 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1745 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2378 ; 1.731 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 227 ; 6.140 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;41.677 ;26.528 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 310 ;16.752 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;20.675 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 274 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1285 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 772 ; 0.243 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1182 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 101 ; 0.195 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.229 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1130 ; 1.265 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1760 ; 1.929 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 708 ; 1.415 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 611 ; 1.976 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 1 B 108 3 REMARK 3 1 A 1 A 108 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 B (A): 425 ; NULL ; NULL REMARK 3 LOOSE POSITIONAL 1 B (A): 351 ; NULL ; NULL REMARK 3 TIGHT THERMAL 1 B (A**2): 425 ; NULL ; NULL REMARK 3 LOOSE THERMAL 1 B (A**2): 351 ; NULL ; NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 6 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9780 -18.4950 3.9740 REMARK 3 T TENSOR REMARK 3 T11: 0.1585 T22: 0.0787 REMARK 3 T33: 0.2373 T12: 0.0039 REMARK 3 T13: 0.1300 T23: -0.2794 REMARK 3 L TENSOR REMARK 3 L11: 29.7427 L22: 19.0059 REMARK 3 L33: 34.1337 L12: 0.9858 REMARK 3 L13: 14.5229 L23: -8.3256 REMARK 3 S TENSOR REMARK 3 S11: -0.6891 S12: -1.5240 S13: 1.0004 REMARK 3 S21: 1.4774 S22: -0.7133 S23: 1.2049 REMARK 3 S31: -1.7610 S32: -1.9744 S33: 1.4024 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7100 -25.8060 -3.1980 REMARK 3 T TENSOR REMARK 3 T11: 0.0468 T22: 0.0649 REMARK 3 T33: 0.1618 T12: 0.0457 REMARK 3 T13: 0.0252 T23: -0.0697 REMARK 3 L TENSOR REMARK 3 L11: 4.7010 L22: 2.8325 REMARK 3 L33: 2.6416 L12: -0.5097 REMARK 3 L13: 1.4915 L23: 0.4752 REMARK 3 S TENSOR REMARK 3 S11: 0.3375 S12: 0.3298 S13: 0.0781 REMARK 3 S21: 0.0206 S22: -0.1693 S23: 0.2961 REMARK 3 S31: -0.0993 S32: 0.1582 S33: -0.1682 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8950 -25.5160 8.2970 REMARK 3 T TENSOR REMARK 3 T11: 0.0863 T22: 0.0940 REMARK 3 T33: 0.2247 T12: -0.0029 REMARK 3 T13: 0.1132 T23: -0.1370 REMARK 3 L TENSOR REMARK 3 L11: 4.5473 L22: 6.9606 REMARK 3 L33: 9.5855 L12: 1.5301 REMARK 3 L13: 2.4562 L23: -1.9925 REMARK 3 S TENSOR REMARK 3 S11: 0.1215 S12: -0.7160 S13: 0.2673 REMARK 3 S21: 0.7958 S22: -0.0911 S23: 0.2894 REMARK 3 S31: -0.2724 S32: -0.2134 S33: -0.0303 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9210 -30.9990 -9.0990 REMARK 3 T TENSOR REMARK 3 T11: 0.1157 T22: 0.1582 REMARK 3 T33: 0.1507 T12: 0.0526 REMARK 3 T13: -0.0317 T23: -0.1319 REMARK 3 L TENSOR REMARK 3 L11: 4.6664 L22: 4.2483 REMARK 3 L33: 1.3713 L12: -3.4462 REMARK 3 L13: 0.4909 L23: -0.7819 REMARK 3 S TENSOR REMARK 3 S11: 0.3643 S12: 0.8532 S13: -0.5901 REMARK 3 S21: -0.5373 S22: -0.3594 S23: 0.4935 REMARK 3 S31: 0.0215 S32: -0.2307 S33: -0.0049 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7100 -35.1030 5.1330 REMARK 3 T TENSOR REMARK 3 T11: 0.0881 T22: 0.0084 REMARK 3 T33: 0.2555 T12: 0.0135 REMARK 3 T13: 0.0833 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 7.4718 L22: 5.1459 REMARK 3 L33: 4.6688 L12: 2.1607 REMARK 3 L13: -1.6091 L23: -1.6747 REMARK 3 S TENSOR REMARK 3 S11: 0.2446 S12: -0.2895 S13: -0.5177 REMARK 3 S21: 0.4067 S22: -0.1512 S23: 0.1604 REMARK 3 S31: 0.2831 S32: 0.0962 S33: -0.0935 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 16 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6980 -55.5340 -6.9330 REMARK 3 T TENSOR REMARK 3 T11: 0.2038 T22: 0.1899 REMARK 3 T33: 0.6036 T12: 0.0640 REMARK 3 T13: 0.0076 T23: -0.2732 REMARK 3 L TENSOR REMARK 3 L11: 18.5563 L22: 11.0202 REMARK 3 L33: 4.1538 L12: 2.7830 REMARK 3 L13: -7.1802 L23: 1.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.3411 S12: 0.8661 S13: -1.0683 REMARK 3 S21: -0.2164 S22: 0.1752 S23: 0.6958 REMARK 3 S31: -0.0021 S32: -0.6993 S33: 0.1660 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 43 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3210 -45.4340 -7.6430 REMARK 3 T TENSOR REMARK 3 T11: 0.1829 T22: 0.2744 REMARK 3 T33: 0.3068 T12: 0.1009 REMARK 3 T13: 0.0223 T23: -0.2215 REMARK 3 L TENSOR REMARK 3 L11: 4.3258 L22: 6.1039 REMARK 3 L33: 0.0017 L12: -3.1434 REMARK 3 L13: -0.0172 L23: -0.0657 REMARK 3 S TENSOR REMARK 3 S11: 0.3239 S12: 0.8473 S13: -0.7138 REMARK 3 S21: -0.4395 S22: -0.2194 S23: 0.0582 REMARK 3 S31: 0.2926 S32: 0.0919 S33: -0.1044 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 71 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7540 -47.9800 -6.1990 REMARK 3 T TENSOR REMARK 3 T11: 0.1856 T22: 0.2296 REMARK 3 T33: 0.2607 T12: 0.1236 REMARK 3 T13: -0.0518 T23: -0.2768 REMARK 3 L TENSOR REMARK 3 L11: 10.5505 L22: 7.9490 REMARK 3 L33: 3.2711 L12: -1.9577 REMARK 3 L13: -0.6665 L23: -1.3447 REMARK 3 S TENSOR REMARK 3 S11: 0.0565 S12: 0.5923 S13: -1.0180 REMARK 3 S21: -0.0763 S22: 0.1531 S23: -0.0643 REMARK 3 S31: 0.0598 S32: 0.1515 S33: -0.2096 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 72 B 87 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4020 -45.2770 1.3100 REMARK 3 T TENSOR REMARK 3 T11: 0.3487 T22: 0.1590 REMARK 3 T33: 0.2439 T12: 0.0880 REMARK 3 T13: -0.0491 T23: -0.2061 REMARK 3 L TENSOR REMARK 3 L11: 20.4574 L22: 9.6085 REMARK 3 L33: 1.0773 L12: -2.8582 REMARK 3 L13: -2.0276 L23: 0.2501 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: -0.4484 S13: -1.1268 REMARK 3 S21: 1.0642 S22: 0.1976 S23: -0.3254 REMARK 3 S31: 0.3643 S32: 0.4343 S33: -0.2622 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 88 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4860 -36.2570 -5.4690 REMARK 3 T TENSOR REMARK 3 T11: 0.2468 T22: 0.1974 REMARK 3 T33: 0.2267 T12: 0.0266 REMARK 3 T13: 0.1737 T23: -0.1229 REMARK 3 L TENSOR REMARK 3 L11: 12.1982 L22: 9.4829 REMARK 3 L33: 5.5422 L12: -1.9592 REMARK 3 L13: -0.3813 L23: 4.6222 REMARK 3 S TENSOR REMARK 3 S11: 0.1794 S12: 0.8383 S13: -0.4905 REMARK 3 S21: 0.1454 S22: -0.1853 S23: -0.4159 REMARK 3 S31: -0.0323 S32: 0.2691 S33: 0.0059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS
REMARK 4 REMARK 4 2H73 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB038011.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MONTEL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM 2 REMARK 200 DATA SCALING SOFTWARE : SAINT, SADABS, XPREP REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9672 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 44.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.430 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03190 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.26 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23220 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2TRX REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% (V/V) MPD, AC2CU 1 MM, HEPES 15 MM REMARK 280 PH 7.0, COUNTER-DIFFUSION, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 14.14833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.29667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.22250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.37083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 7.07417 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 50 130.51 -36.35 REMARK 500 ASN B 83 56.08 34.43 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 502
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2TRX RELATED DB: PDB REMARK 900 RELATED ID: 1ZZY RELATED DB: PDB REMARK 900 RELATED ID: 2FCH RELATED DB: PDB REMARK 900 RELATED ID: 2FD3 RELATED DB: PDB REMARK 900 RELATED ID: 2H6X RELATED DB: PDB REMARK 900 RELATED ID: 2H6Y RELATED DB: PDB REMARK 900 RELATED ID: 2H7Z RELATED DB: PDB REMARK 900 RELATED ID: 2H70 RELATED DB: PDB REMARK 900 RELATED ID: 2H71 RELATED DB: PDB REMARK 900 RELATED ID: 2H72 RELATED DB: PDB REMARK 900 RELATED ID: 2H74 RELATED DB: PDB REMARK 900 RELATED ID: 2H75 RELATED DB: PDB REMARK 900 RELATED ID: 2H76 RELATED DB: PDB
DBREF 2H73 A 1 108 UNP Q2M889 Q2M889_ECOLI 2 109 DBREF 2H73 B 1 108 UNP Q2M889 Q2M889_ECOLI 2 109
SEQADV 2H73 GLU A 43 UNP Q2M889 ASP 44 ENGINEERED SEQADV 2H73 GLU B 43 UNP Q2M889 ASP 44 ENGINEERED
SEQRES 1 A 108 SER ASP LYS ILE ILE HIS LEU THR ASP ASP SER PHE ASP SEQRES 2 A 108 THR ASP VAL LEU LYS ALA ASP GLY ALA ILE LEU VAL ASP SEQRES 3 A 108 PHE TRP ALA GLU TRP CYS GLY PRO CYS LYS MET ILE ALA SEQRES 4 A 108 PRO ILE LEU GLU GLU ILE ALA ASP GLU TYR GLN GLY LYS SEQRES 5 A 108 LEU THR VAL ALA LYS LEU ASN ILE ASP GLN ASN PRO GLY SEQRES 6 A 108 THR ALA PRO LYS TYR GLY ILE ARG GLY ILE PRO THR LEU SEQRES 7 A 108 LEU LEU PHE LYS ASN GLY GLU VAL ALA ALA THR LYS VAL SEQRES 8 A 108 GLY ALA LEU SER LYS GLY GLN LEU LYS GLU PHE LEU ASP SEQRES 9 A 108 ALA ASN LEU ALA SEQRES 1 B 108 SER ASP LYS ILE ILE HIS LEU THR ASP ASP SER PHE ASP SEQRES 2 B 108 THR ASP VAL LEU LYS ALA ASP GLY ALA ILE LEU VAL ASP SEQRES 3 B 108 PHE TRP ALA GLU TRP CYS GLY PRO CYS LYS MET ILE ALA SEQRES 4 B 108 PRO ILE LEU GLU GLU ILE ALA ASP GLU TYR GLN GLY LYS SEQRES 5 B 108 LEU THR VAL ALA LYS LEU ASN ILE ASP GLN ASN PRO GLY SEQRES 6 B 108 THR ALA PRO LYS TYR GLY ILE ARG GLY ILE PRO THR LEU SEQRES 7 B 108 LEU LEU PHE LYS ASN GLY GLU VAL ALA ALA THR LYS VAL SEQRES 8 B 108 GLY ALA LEU SER LYS GLY GLN LEU LYS GLU PHE LEU ASP SEQRES 9 B 108 ALA ASN LEU ALA
HET MPD A 501 8 HET MPD A 502 8
HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL
FORMUL 3 MPD 2(C6 H14 O2) FORMUL 5 HOH *79(H2 O)
HELIX 1 1 SER A 11 VAL A 16 1 6 HELIX 2 2 CYS A 32 TYR A 49 1 18 HELIX 3 3 GLY A 65 TYR A 70 1 6 HELIX 4 4 SER A 95 ALA A 108 1 14 HELIX 5 5 SER B 11 VAL B 16 1 6 HELIX 6 6 CYS B 32 TYR B 49 1 18 HELIX 7 7 GLY B 65 TYR B 70 1 6 HELIX 8 8 SER B 95 ALA B 108 1 14
SHEET 1 A 5 ILE A 5 HIS A 6 0 SHEET 2 A 5 LEU A 53 ASN A 59 1 O VAL A 55 N ILE A 5 SHEET 3 A 5 ALA A 22 TRP A 28 1 N ASP A 26 O LEU A 58 SHEET 4 A 5 THR A 77 LYS A 82 -1 O PHE A 81 N ILE A 23 SHEET 5 A 5 GLU A 85 VAL A 91 -1 O ALA A 87 N LEU A 80 SHEET 1 B 5 ILE B 5 HIS B 6 0 SHEET 2 B 5 LEU B 53 ASN B 59 1 O LYS B 57 N ILE B 5 SHEET 3 B 5 ALA B 22 TRP B 28 1 N LEU B 24 O THR B 54 SHEET 4 B 5 THR B 77 LYS B 82 -1 O PHE B 81 N ILE B 23 SHEET 5 B 5 GLU B 85 VAL B 91 -1 O ALA B 87 N LEU B 80
SSBOND 1 CYS A 32 CYS A 35 1555 1555 2.07 SSBOND 2 CYS B 32 CYS B 35 1555 1555 2.06
CISPEP 1 ILE A 75 PRO A 76 0 -0.44 CISPEP 2 ILE B 75 PRO B 76 0 -2.63
SITE 1 AC1 3 ILE A 60 ARG A 73 HOH A 539 SITE 1 AC2 5 GLY A 21 ALA A 22 GLY A 51 LEU A 53 SITE 2 AC2 5 THR A 54
CRYST1 102.991 102.991 42.445 90.00 90.00 120.00 P 61 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009710 0.005606 0.000000 0.00000
SCALE2 0.000000 0.011212 0.000000 0.00000
SCALE3 0.000000 0.000000 0.023560 0.00000