10 20 30 40 50 60 70 80 2H58 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSPORT PROTEIN 25-MAY-06 2H58
TITLE CRYSTAL STRUCTURE OF THE KIFC3 MOTOR DOMAIN IN COMPLEX WITH TITLE 2 ADP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN-LIKE PROTEIN KIFC3 VARIANT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: 3801; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE-3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P28A-LIC
KEYWDS KINESIN, MOTOR DOMAIN, ADP, STRUCTURAL GENOMICS, STRUCTUR KEYWDS 2 AL GENOMICS CONSORTIUM, SGC, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 TRANSPORT PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR J.WANG,Y.SHEN,W.TEMPEL,R.LANDRY,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC)
REVDAT 3 24-FEB-09 2H58 1 VERSN REVDAT 2 06-NOV-07 2H58 1 REMARK REVDAT 1 27-JUN-06 2H58 0
JRNL AUTH J.WANG,Y.SHEN,W.TEMPEL,R.LANDRY,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV, JRNL AUTH 3 H.PARK JRNL TITL CRYSTAL STRUCTURE OF THE KIFC3 MOTOR DOMAIN IN JRNL TITL 2 COMPLEX WITH ADP JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 82571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.654 REMARK 3 FREE R VALUE TEST SET COUNT : 3017 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5679 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3580 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2522 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.91000 REMARK 3 B22 (A**2) : -1.91000 REMARK 3 B33 (A**2) : 2.86500 REMARK 3 B12 (A**2) : -0.95500 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.746 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2605 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1753 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3556 ; 1.453 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4294 ; 1.025 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 5.400 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;35.916 ;24.240 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 453 ;13.510 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;17.736 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 412 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2938 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 525 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 457 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1761 ; 0.205 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1254 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1452 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 176 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.044 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.133 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 30 ; 0.277 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1749 ; 3.149 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 658 ; 0.718 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2620 ; 3.966 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1055 ; 3.146 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 921 ; 4.547 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 2H58 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB037944.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9176 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85292 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.85400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1F9T REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 83.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M SODIUM CITRATE, 0.1M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 93.78100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.14449 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 50.43767 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 93.78100 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 54.14449 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 50.43767 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 93.78100 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 54.14449 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 50.43767 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 93.78100 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 54.14449 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.43767 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 93.78100 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 54.14449 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 50.43767 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 93.78100 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 54.14449 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 50.43767 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 108.28897 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 100.87533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 108.28897 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 100.87533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 108.28897 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 100.87533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 108.28897 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 100.87533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 108.28897 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 100.87533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 108.28897 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 100.87533 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC REMARK 300 ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN. THE BIOLOGICAL UNIT REMARK 300 OF THIS PROTEIN IS UNKNOWN.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 441 REMARK 465 SER A 442 REMARK 465 LYS A 443 REMARK 465 GLY A 444 REMARK 465 GLY A 682 REMARK 465 LYS A 683 REMARK 465 SER A 684 REMARK 465 GLY A 685 REMARK 465 ALA A 686 REMARK 465 GLU A 687 REMARK 465 SER A 767 REMARK 465 VAL A 768 REMARK 465 GLU A 769 REMARK 465 LEU A 770
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 457 CD CE NZ REMARK 470 GLU A 458 CG CD OE1 OE2 REMARK 470 LYS A 484 CE NZ REMARK 470 LYS A 486 CE NZ REMARK 470 GLU A 642 CG CD OE1 OE2 REMARK 470 GLN A 695 CD OE1 NE2 REMARK 470 ARG A 714 CD NE CZ NH1 NH2 REMARK 470 GLN A 715 CD OE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 UNK UNX A 409 O HOH A 184 1.89 REMARK 500 UNK UNX A 406 O HOH A 173 1.99 REMARK 500 UNK UNX A 406 O HOH A 87 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 492 -168.33 -114.57 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 535 OG1 REMARK 620 2 HOH A 172 O 89.8 REMARK 620 3 HOH A 169 O 90.8 87.4 REMARK 620 4 HOH A 153 O 176.1 86.3 89.0 REMARK 620 5 ADP A 901 O2B 87.2 86.9 173.9 92.5 REMARK 620 6 HOH A 168 O 89.1 175.4 88.1 94.8 97.6 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 801 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 901 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 401 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 402 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 403 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 404 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 405 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 406 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 407 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 408 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 409 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 410 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 411
DBREF 2H58 A 443 770 UNP Q59G19 Q59G19_HUMAN 487 814
SEQADV 2H58 GLY A 441 UNP Q59G19 EXPRESSION TAG SEQADV 2H58 SER A 442 UNP Q59G19 EXPRESSION TAG
SEQRES 1 A 330 GLY SER LYS GLY ASN ILE ARG VAL ILE ALA ARG VAL ARG SEQRES 2 A 330 PRO VAL THR LYS GLU ASP GLY GLU GLY PRO GLU ALA THR SEQRES 3 A 330 ASN ALA VAL THR PHE ASP ALA ASP ASP ASP SER ILE ILE SEQRES 4 A 330 HIS LEU LEU HIS LYS GLY LYS PRO VAL SER PHE GLU LEU SEQRES 5 A 330 ASP LYS VAL PHE SER PRO GLN ALA SER GLN GLN ASP VAL SEQRES 6 A 330 PHE GLN GLU VAL GLN ALA LEU VAL THR SER CYS ILE ASP SEQRES 7 A 330 GLY PHE ASN VAL CYS ILE PHE ALA TYR GLY GLN THR GLY SEQRES 8 A 330 ALA GLY LYS THR TYR THR MET GLU GLY THR ALA GLU ASN SEQRES 9 A 330 PRO GLY ILE ASN GLN ARG ALA LEU GLN LEU LEU PHE SER SEQRES 10 A 330 GLU VAL GLN GLU LYS ALA SER ASP TRP GLU TYR THR ILE SEQRES 11 A 330 THR VAL SER ALA ALA GLU ILE TYR ASN GLU VAL LEU ARG SEQRES 12 A 330 ASP LEU LEU GLY LYS GLU PRO GLN GLU LYS LEU GLU ILE SEQRES 13 A 330 ARG LEU CYS PRO ASP GLY SER GLY GLN LEU TYR VAL PRO SEQRES 14 A 330 GLY LEU THR GLU PHE GLN VAL GLN SER VAL ASP ASP ILE SEQRES 15 A 330 ASN LYS VAL PHE GLU PHE GLY HIS THR ASN ARG THR THR SEQRES 16 A 330 GLU PHE THR ASN LEU ASN GLU HIS SER SER ARG SER HIS SEQRES 17 A 330 ALA LEU LEU ILE VAL THR VAL ARG GLY VAL ASP CYS SER SEQRES 18 A 330 THR GLY LEU ARG THR THR GLY LYS LEU ASN LEU VAL ASP SEQRES 19 A 330 LEU ALA GLY SER GLU ARG VAL GLY LYS SER GLY ALA GLU SEQRES 20 A 330 GLY SER ARG LEU ARG GLU ALA GLN HIS ILE ASN LYS SER SEQRES 21 A 330 LEU SER ALA LEU GLY ASP VAL ILE ALA ALA LEU ARG SER SEQRES 22 A 330 ARG GLN GLY HIS VAL PRO PHE ARG ASN SER LYS LEU THR SEQRES 23 A 330 TYR LEU LEU GLN ASP SER LEU SER GLY ASP SER LYS THR SEQRES 24 A 330 LEU MET VAL VAL GLN VAL SER PRO VAL GLU LYS ASN THR SEQRES 25 A 330 SER GLU THR LEU TYR SER LEU LYS PHE ALA GLU ARG VAL SEQRES 26 A 330 ARG SER VAL GLU LEU
HET MG A 801 1 HET ADP A 901 27 HET UNX A 401 1 HET UNX A 402 1 HET UNX A 403 1 HET UNX A 404 1 HET UNX A 405 1 HET UNX A 406 1 HET UNX A 407 1 HET UNX A 408 1 HET UNX A 409 1 HET UNX A 410 1 HET UNX A 411 1
HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM UNX UNKNOWN ATOM OR ION
FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 UNX 11(X) FORMUL 15 HOH *186(H2 O)
HELIX 1 1 THR A 456 GLY A 460 5 5 HELIX 2 2 GLY A 462 THR A 466 5 5 HELIX 3 3 SER A 501 GLN A 507 1 7 HELIX 4 4 VAL A 509 ASP A 518 1 10 HELIX 5 5 GLY A 533 GLU A 539 1 7 HELIX 6 6 GLY A 546 GLU A 561 1 16 HELIX 7 7 SER A 618 ARG A 633 1 16 HELIX 8 8 HIS A 643 SER A 647 5 5 HELIX 9 9 GLY A 688 SER A 713 1 26 HELIX 10 10 PRO A 719 ASN A 722 5 4 HELIX 11 11 SER A 723 LEU A 729 1 7 HELIX 12 12 LEU A 729 SER A 734 1 6 HELIX 13 13 VAL A 748 LYS A 750 5 3 HELIX 14 14 ASN A 751 ARG A 766 1 16
SHEET 1 A 8 LYS A 494 PHE A 496 0 SHEET 2 A 8 ILE A 446 VAL A 452 1 N ALA A 450 O PHE A 496 SHEET 3 A 8 LYS A 738 VAL A 745 1 O VAL A 743 N ILE A 449 SHEET 4 A 8 VAL A 522 TYR A 527 1 N PHE A 525 O VAL A 742 SHEET 5 A 8 ARG A 665 ASP A 674 1 O VAL A 673 N ILE A 524 SHEET 6 A 8 HIS A 648 ASP A 659 -1 N VAL A 655 O GLY A 668 SHEET 7 A 8 TRP A 566 TYR A 578 -1 N ALA A 575 O LEU A 650 SHEET 8 A 8 VAL A 581 ASP A 584 -1 O ARG A 583 N GLU A 576 SHEET 1 B 8 LYS A 494 PHE A 496 0 SHEET 2 B 8 ILE A 446 VAL A 452 1 N ALA A 450 O PHE A 496 SHEET 3 B 8 LYS A 738 VAL A 745 1 O VAL A 743 N ILE A 449 SHEET 4 B 8 VAL A 522 TYR A 527 1 N PHE A 525 O VAL A 742 SHEET 5 B 8 ARG A 665 ASP A 674 1 O VAL A 673 N ILE A 524 SHEET 6 B 8 HIS A 648 ASP A 659 -1 N VAL A 655 O GLY A 668 SHEET 7 B 8 TRP A 566 TYR A 578 -1 N ALA A 575 O LEU A 650 SHEET 8 B 8 PHE A 614 VAL A 616 -1 O PHE A 614 N VAL A 572 SHEET 1 C 3 VAL A 469 PHE A 471 0 SHEET 2 C 3 ILE A 478 HIS A 483 -1 O HIS A 480 N THR A 470 SHEET 3 C 3 LYS A 486 GLU A 491 -1 O VAL A 488 N LEU A 481 SHEET 1 D 2 ARG A 597 LEU A 598 0 SHEET 2 D 2 LEU A 606 TYR A 607 -1 O TYR A 607 N ARG A 597
LINK OG1 THR A 535 MG MG A 801 1555 1555 2.12 LINK MG MG A 801 O HOH A 172 1555 1555 2.01 LINK MG MG A 801 O HOH A 169 1555 1555 2.02 LINK MG MG A 801 O HOH A 153 1555 1555 2.12 LINK MG MG A 801 O2B ADP A 901 1555 1555 2.17 LINK MG MG A 801 O HOH A 168 1555 1555 2.05
CISPEP 1 GLU A 589 PRO A 590 0 -10.68
SITE 1 AC1 6 HOH A 153 HOH A 168 HOH A 169 HOH A 172 SITE 2 AC1 6 THR A 535 ADP A 901 SITE 1 AC2 18 HOH A 29 HOH A 121 HOH A 153 HOH A 172 SITE 2 AC2 18 HOH A 175 ARG A 451 ARG A 453 PRO A 454 SITE 3 AC2 18 THR A 456 GLN A 529 THR A 530 GLY A 531 SITE 4 AC2 18 ALA A 532 GLY A 533 LYS A 534 THR A 535 SITE 5 AC2 18 TYR A 536 MG A 801 SITE 1 AC3 2 GLU A 595 ILE A 596 SITE 1 AC4 2 MET A 538 ASN A 548 SITE 1 AC5 2 GLU A 613 ASN A 639 SITE 1 AC6 3 HOH A 89 SER A 644 SER A 645 SITE 1 AC7 2 VAL A 608 LEU A 611 SITE 1 AC8 6 HOH A 87 HOH A 112 HOH A 173 GLY A 519 SITE 2 AC8 6 ASN A 521 THR A 667 SITE 1 AC9 3 ARG A 692 HIS A 696 HIS A 717 SITE 1 BC1 2 HOH A 57 GLU A 589 SITE 1 BC2 4 HOH A 26 HOH A 184 SER A 644 SER A 647 SITE 1 BC3 2 ASP A 472 HIS A 480 SITE 1 BC4 2 THR A 612 GLU A 613
CRYST1 187.562 187.562 151.313 90.00 90.00 120.00 H 3 2 18
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005330 0.003080 0.000000 0.00000
SCALE2 0.000000 0.006160 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006610 0.00000