10 20 30 40 50 60 70 80 2H3V - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 23-MAY-06 2H3V
TITLE STRUCTURE OF THE HIV-1 MATRIX PROTEIN BOUND TO DI-C8- TITLE 2 PHOSPHATIDYLINOSITOL-(4,5)-BISPHOSPHATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAG POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-132; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS HIV-1 UNMYRISTOYLATED MA PROTEIN, VIRAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.S.SAAD,J.MILLER,J.TAI,A.KIM,R.H.GHANAM,M.F.SUMMERS
REVDAT 2 24-FEB-09 2H3V 1 VERSN REVDAT 1 25-JUL-06 2H3V 0
JRNL AUTH J.S.SAAD,J.MILLER,J.TAI,A.KIM,R.H.GHANAM, JRNL AUTH 2 M.F.SUMMERS JRNL TITL STRUCTURAL BASIS FOR TARGETING HIV-1 GAG PROTEINS JRNL TITL 2 TO THE PLASMA MEMBRANE FOR VIRUS ASSEMBLY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 11364 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16840558 JRNL DOI 10.1073/PNAS.0602818103
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2H3V COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB037896.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50MM PHOSPHATE BUFFER, 5MM REMARK 210 DTT, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX, DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 170.89 61.32 REMARK 500 1 GLN A 28 174.04 -59.33 REMARK 500 1 SER A 72 -179.80 -64.25 REMARK 500 1 GLN A 90 -71.93 -97.68 REMARK 500 1 ARG A 91 -35.45 -179.29 REMARK 500 1 ASP A 93 54.34 -116.99 REMARK 500 2 ARG A 4 93.15 62.25 REMARK 500 2 ALA A 5 -170.53 59.77 REMARK 500 2 VAL A 7 -69.15 -91.71 REMARK 500 2 LYS A 27 102.49 -54.29 REMARK 500 2 GLN A 90 -70.03 -75.70 REMARK 500 2 ARG A 91 -35.17 -179.30 REMARK 500 2 ASP A 93 60.61 -112.37 REMARK 500 2 ALA A 119 27.11 -140.95 REMARK 500 2 ALA A 120 25.68 -140.16 REMARK 500 2 ASP A 121 38.68 -152.38 REMARK 500 2 SER A 129 172.96 -57.23 REMARK 500 2 GLN A 130 95.65 -64.30 REMARK 500 3 ALA A 3 44.21 -99.58 REMARK 500 3 ARG A 4 37.67 -170.13 REMARK 500 3 ALA A 5 -53.48 -139.56 REMARK 500 3 GLN A 90 -74.41 -93.68 REMARK 500 3 ARG A 91 -35.89 -179.23 REMARK 500 3 ASP A 93 57.98 -114.63 REMARK 500 3 ASP A 121 46.66 -96.25 REMARK 500 4 SER A 6 33.42 -167.36 REMARK 500 4 SER A 9 -175.50 -69.89 REMARK 500 4 LYS A 27 103.15 -52.48 REMARK 500 4 GLN A 90 -74.78 -79.74 REMARK 500 4 ARG A 91 34.44 -179.55 REMARK 500 4 VAL A 94 170.00 -51.79 REMARK 500 4 ALA A 115 -44.59 -138.22 REMARK 500 4 ALA A 118 -35.84 -176.48 REMARK 500 4 THR A 122 98.83 -61.10 REMARK 500 4 GLN A 130 64.55 -105.12 REMARK 500 5 SER A 6 -172.72 56.53 REMARK 500 5 LYS A 26 26.62 -140.74 REMARK 500 5 GLN A 90 -74.30 -79.06 REMARK 500 5 ARG A 91 -35.57 -178.09 REMARK 500 5 ASP A 93 56.85 -113.30 REMARK 500 5 ALA A 115 36.69 -174.78 REMARK 500 5 ASN A 125 49.52 -93.63 REMARK 500 5 SER A 126 -174.51 61.16 REMARK 500 6 ALA A 3 -67.63 -159.73 REMARK 500 6 SER A 6 -47.39 -173.71 REMARK 500 6 VAL A 7 -67.78 -98.02 REMARK 500 6 SER A 9 -172.07 -69.68 REMARK 500 6 LYS A 112 -53.08 -131.86 REMARK 500 6 ALA A 120 28.78 -147.00 REMARK 500 6 SER A 126 173.92 62.41 REMARK 500 7 GLN A 28 174.94 -57.56 REMARK 500 7 GLN A 90 -71.95 -79.65 REMARK 500 7 ARG A 91 -35.07 -179.34 REMARK 500 7 ASP A 93 56.91 -119.14 REMARK 500 7 SER A 126 -45.12 -173.18 REMARK 500 7 GLN A 130 -57.04 -129.08 REMARK 500 8 ALA A 5 102.48 -168.45 REMARK 500 8 SER A 6 72.40 -161.08 REMARK 500 8 ARG A 91 -35.50 -179.13 REMARK 500 8 ASP A 93 55.71 -114.88 REMARK 500 8 ALA A 118 -44.54 -172.64 REMARK 500 8 ASP A 121 59.18 -104.19 REMARK 500 8 THR A 122 -70.67 -61.45 REMARK 500 9 ALA A 5 111.09 -169.04 REMARK 500 9 SER A 6 -176.43 61.39 REMARK 500 9 GLN A 90 -70.77 -73.02 REMARK 500 9 ARG A 91 -35.31 -179.28 REMARK 500 9 ASP A 93 54.96 -112.66 REMARK 500 9 LYS A 114 -71.01 -89.89 REMARK 500 9 GLN A 117 -48.63 -136.34 REMARK 500 10 ALA A 3 -172.60 58.27 REMARK 500 10 GLN A 116 41.58 -158.16 REMARK 500 10 ALA A 120 -40.61 -160.12 REMARK 500 10 ASN A 125 75.79 -104.36 REMARK 500 11 ARG A 4 172.38 62.56 REMARK 500 11 ALA A 5 86.62 -153.36 REMARK 500 11 SER A 6 139.32 -174.08 REMARK 500 11 LYS A 27 103.63 -52.11 REMARK 500 11 GLN A 90 -69.31 -92.23 REMARK 500 11 ARG A 91 -37.79 -179.27 REMARK 500 11 ASP A 93 57.89 -114.01 REMARK 500 11 ALA A 119 33.68 -143.95 REMARK 500 11 ALA A 120 -54.24 -145.12 REMARK 500 11 ASN A 131 -49.78 -134.28 REMARK 500 12 ARG A 4 85.21 52.04 REMARK 500 12 SER A 6 -45.16 -178.44 REMARK 500 12 LYS A 18 32.36 -95.60 REMARK 500 12 SER A 72 177.59 -57.90 REMARK 500 12 ASP A 93 78.28 -113.13 REMARK 500 12 ALA A 115 40.14 -144.97 REMARK 500 12 THR A 122 -170.79 51.27 REMARK 500 12 ASN A 124 63.15 -115.25 REMARK 500 12 SER A 129 128.36 -178.75 REMARK 500 13 VAL A 7 -69.14 -104.76 REMARK 500 13 GLU A 74 -41.91 -152.72 REMARK 500 13 ARG A 91 -35.08 -179.36 REMARK 500 13 THR A 122 81.47 61.96 REMARK 500 13 ASN A 124 175.67 -59.92 REMARK 500 14 SER A 6 173.58 61.91 REMARK 500 14 ARG A 91 -36.36 -179.28 REMARK 500 14 ASP A 93 58.05 -109.69 REMARK 500 14 ALA A 118 -45.47 -170.90 REMARK 500 15 VAL A 7 -72.63 -104.48 REMARK 500 15 LYS A 27 108.71 -52.38 REMARK 500 15 LYS A 114 31.76 -97.56 REMARK 500 15 ALA A 115 38.38 -171.52 REMARK 500 15 ALA A 119 -168.97 -100.93 REMARK 500 15 GLN A 127 73.56 -173.28 REMARK 500 15 SER A 129 87.04 59.43 REMARK 500 16 ALA A 119 25.43 -152.03 REMARK 500 16 GLN A 127 71.70 -155.10 REMARK 500 16 SER A 129 -170.15 58.90 REMARK 500 16 ASN A 131 88.95 -67.27 REMARK 500 17 ALA A 3 -64.02 -123.73 REMARK 500 17 SER A 6 -179.84 59.90 REMARK 500 17 VAL A 7 -61.60 -96.50 REMARK 500 17 GLN A 28 -176.97 -66.00 REMARK 500 17 THR A 70 44.62 -148.20 REMARK 500 17 GLN A 117 -58.69 -133.15 REMARK 500 17 ASP A 121 48.03 -106.88 REMARK 500 17 SER A 129 -173.49 -174.88 REMARK 500 18 ALA A 5 -58.50 -127.05 REMARK 500 18 SER A 6 -75.77 69.32 REMARK 500 18 VAL A 7 -68.43 -106.37 REMARK 500 18 LYS A 27 105.72 -51.96 REMARK 500 18 SER A 72 -179.51 -57.84 REMARK 500 18 ARG A 91 -35.67 -179.23 REMARK 500 18 ASP A 93 62.64 -106.30 REMARK 500 18 SER A 111 35.90 -173.79 REMARK 500 18 ALA A 120 28.32 -158.87 REMARK 500 18 ASN A 124 171.85 63.03 REMARK 500 18 GLN A 127 -64.87 -135.91 REMARK 500 19 LYS A 27 99.69 -57.09 REMARK 500 19 SER A 72 -176.96 -59.63 REMARK 500 19 GLN A 90 -72.61 -76.31 REMARK 500 19 ARG A 91 -35.04 -179.30 REMARK 500 19 ASP A 93 54.98 -114.64 REMARK 500 19 ASP A 121 -75.87 69.28 REMARK 500 19 THR A 122 74.41 52.41 REMARK 500 19 SER A 126 79.60 -160.55 REMARK 500 19 SER A 129 -178.71 -69.83 REMARK 500 20 ALA A 3 71.17 54.14 REMARK 500 20 SER A 6 -74.30 -179.33 REMARK 500 20 GLN A 90 -71.87 -99.20 REMARK 500 20 ARG A 91 -36.73 -179.08 REMARK 500 20 ASP A 93 68.71 -109.74 REMARK 500 20 THR A 122 146.45 -172.75 REMARK 500 20 ASN A 124 87.46 56.28 REMARK 500 20 ASN A 125 78.51 -170.55 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PIO A 300
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H3F RELATED DB: PDB REMARK 900 RELATED ID: 2H3I RELATED DB: PDB REMARK 900 RELATED ID: 2H3Q RELATED DB: PDB REMARK 900 RELATED ID: 2H3Z RELATED DB: PDB
DBREF 2H3V A 2 132 UNP P12497 POL_HV1N5 1 131
SEQRES 1 A 131 GLY ALA ARG ALA SER VAL LEU SER GLY GLY GLU LEU ASP SEQRES 2 A 131 LYS TRP GLU LYS ILE ARG LEU ARG PRO GLY GLY LYS LYS SEQRES 3 A 131 GLN TYR LYS LEU LYS HIS ILE VAL TRP ALA SER ARG GLU SEQRES 4 A 131 LEU GLU ARG PHE ALA VAL ASN PRO GLY LEU LEU GLU THR SEQRES 5 A 131 SER GLU GLY CYS ARG GLN ILE LEU GLY GLN LEU GLN PRO SEQRES 6 A 131 SER LEU GLN THR GLY SER GLU GLU LEU ARG SER LEU TYR SEQRES 7 A 131 ASN THR ILE ALA VAL LEU TYR CYS VAL HIS GLN ARG ILE SEQRES 8 A 131 ASP VAL LYS ASP THR LYS GLU ALA LEU ASP LYS ILE GLU SEQRES 9 A 131 GLU GLU GLN ASN LYS SER LYS LYS LYS ALA GLN GLN ALA SEQRES 10 A 131 ALA ALA ASP THR GLY ASN ASN SER GLN VAL SER GLN ASN SEQRES 11 A 131 TYR
HET PIO A 300 91
HETNAM PIO L-ALPHA-D-MYOPHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE, HETNAM 2 PIO D(+)SN1,2DI-O-OCTANOYLGLYCERYL
HETSYN PIO L-ALPHA-PHOSPHATIDYL-D-MYO-INOSITOL 4,5-DIPHOSPHATE, HETSYN 2 PIO DIOCTANOYL; L-ALPHA-PHOSPHATIDYLINOSITOL 4,5- HETSYN 3 PIO DIPHOSPHATE SODIUM SALT; PIP2; 1,2-DIACYL-SN-GLYCERO- HETSYN 4 PIO 3-PHOSPHO-(1-D-MYO-INOSITOL4,5-BISPHOSPHATE); HETSYN 5 PIO TRIPHOSPHOINOSITIDE
FORMUL 2 PIO C25 H49 O19 P3
HELIX 1 1 SER A 9 ILE A 19 1 11 HELIX 2 2 LYS A 30 GLU A 42 1 13 HELIX 3 3 ARG A 43 ALA A 45 5 3 HELIX 4 4 ASN A 47 GLU A 52 5 6 HELIX 5 5 THR A 53 GLN A 65 1 13 HELIX 6 6 SER A 72 ARG A 91 1 20 HELIX 7 7 ASP A 96 LYS A 113 1 18
SITE 1 AC1 8 LEU A 21 ARG A 22 LYS A 27 TRP A 36 SITE 2 AC1 8 ARG A 76 SER A 77 ASN A 80 THR A 81
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000