10 20 30 40 50 60 70 80 2GWP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIBIOTIC 05-MAY-06 2GWP
TITLE HIGH-RESOLUTION SOLUTION STRUCTURE OF THE SALT-BRIDGE TITLE 2 DEFFICIENT MOUSE DEFENSIN (E15D)-CRYPTDIN4
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEFENSIN-RELATED CRYPTDIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CRYPTDIN4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DEFCR4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-CODON-PLUS-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A
KEYWDS TRIPLE STRANDED BETA SHEET, BETA HAIRPIN, ANTIBIOTIC
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.J.ROSENGREN,D.J.CRAIK,H.J.VOGEL,N.L.DALY,A.J.OUELLETTE
REVDAT 3 24-FEB-09 2GWP 1 VERSN REVDAT 2 10-OCT-06 2GWP 1 JRNL REVDAT 1 25-JUL-06 2GWP 0
JRNL AUTH K.J.ROSENGREN,N.L.DALY,L.M.FORNANDER,Y.SHIRAFUJI, JRNL AUTH 2 X.QU,H.J.VOGEL,A.J.OUELLETTE,D.J.CRAIK JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF THE JRNL TITL 2 CONSERVED SALT BRIDGE IN MAMMALIAN PANETH CELL JRNL TITL 3 ALPHA-DEFENSINS: SOLUTION STRUCTURES OF MOUSE JRNL TITL 4 CRYPTDIN-4 AND (E15D)-CRYPTDIN-4. JRNL REF J.BIOL.CHEM. V. 281 28068 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16857681 JRNL DOI 10.1074/JBC.M604992200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER, A.T. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2GWP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB037641.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288; 293; 298; 303; 308 REMARK 210 PH : 5.1; 5.1; 5.1; 5.1; 5.1 REMARK 210 IONIC STRENGTH : 0; 0; 0; 0; 0 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MG (E15D)-CRYPTDIN4 / REMARK 210 0.5ML; 90% H2O / 10% D2O; 0.6 REMARK 210 MG (E15D)-CRYPTDIN4 / 0.5ML; REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 1.3.5, CARA 1.0, REMARK 210 CYANA 2.0 REMARK 210 METHOD USED : STRUCTURE WAS CALCULATED REMARK 210 USING TORSION ANGLE DYNAMICS REMARK 210 FOLLOWED BY REFINEMENT IN REMARK 210 EXPLICIT SOLVENT USING REMARK 210 CARTESIAN DYNAMICS WITHIN CNS. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 10 177.58 178.83 REMARK 500 1 ARG A 13 76.32 -69.83 REMARK 500 2 LEU A 2 -49.53 -177.73 REMARK 500 2 HIS A 10 -179.68 -177.17 REMARK 500 2 ILE A 23 85.39 -59.72 REMARK 500 2 ARG A 24 31.03 72.88 REMARK 500 3 LEU A 2 -52.60 -167.02 REMARK 500 3 HIS A 10 174.41 179.30 REMARK 500 3 ILE A 23 95.96 -57.89 REMARK 500 4 ASP A 15 -168.92 -78.61 REMARK 500 4 ILE A 23 85.35 -60.55 REMARK 500 4 ARG A 31 35.86 -87.51 REMARK 500 5 ILE A 23 96.26 -61.54 REMARK 500 6 LEU A 3 45.47 -158.19 REMARK 500 6 ARG A 13 107.26 -52.82 REMARK 500 6 ILE A 23 93.93 -62.12 REMARK 500 7 ILE A 23 91.91 -61.62 REMARK 500 8 LEU A 2 -122.43 -79.68 REMARK 500 8 HIS A 10 161.32 179.93 REMARK 500 9 LEU A 3 45.36 -151.88 REMARK 500 9 ARG A 13 101.56 -59.03 REMARK 500 9 ILE A 23 91.32 -53.30 REMARK 500 10 HIS A 10 170.74 179.84 REMARK 500 10 ILE A 23 95.82 -61.20 REMARK 500 10 ARG A 31 -61.82 -103.77 REMARK 500 11 ARG A 13 105.82 -55.94 REMARK 500 11 ILE A 23 88.91 -61.32 REMARK 500 12 ILE A 23 91.41 -62.26 REMARK 500 13 LEU A 3 38.48 -147.76 REMARK 500 13 CYS A 21 -49.58 -147.17 REMARK 500 13 ILE A 23 93.81 -62.32 REMARK 500 13 ARG A 24 34.13 71.58 REMARK 500 13 ARG A 31 -31.70 -170.16 REMARK 500 14 HIS A 10 174.44 179.11 REMARK 500 14 ARG A 13 83.46 -67.93 REMARK 500 14 ILE A 23 93.44 -60.57 REMARK 500 14 ARG A 31 -33.91 -134.50 REMARK 500 15 HIS A 10 -179.61 -179.87 REMARK 500 15 ARG A 13 98.69 -59.97 REMARK 500 15 ASP A 15 -165.01 -73.40 REMARK 500 15 ILE A 23 93.42 -60.43 REMARK 500 16 ARG A 13 96.09 -61.08 REMARK 500 16 ILE A 23 97.96 -63.24 REMARK 500 16 ARG A 31 -72.96 -59.45 REMARK 500 17 ARG A 13 90.56 -64.43 REMARK 500 17 ILE A 23 97.31 -60.90 REMARK 500 17 ARG A 24 33.21 71.48 REMARK 500 18 ARG A 13 79.86 -67.33 REMARK 500 18 ILE A 23 97.78 -55.51 REMARK 500 19 HIS A 10 164.47 179.30 REMARK 500 19 ARG A 13 92.19 -63.06 REMARK 500 19 ILE A 23 87.86 -53.61 REMARK 500 20 ARG A 13 109.74 -59.78 REMARK 500 20 ARG A 24 31.15 70.10 REMARK 500 20 ARG A 31 19.65 -148.67 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GW9 RELATED DB: PDB REMARK 900 STRUCTURE OF THE NATIVE CRYPTDIN4 PEPTIDE
DBREF 2GWP A 1 32 UNP P28311 DEF4_MOUSE 61 92
SEQADV 2GWP ASP A 15 UNP P28311 GLU 75 ENGINEERED
SEQRES 1 A 32 GLY LEU LEU CYS TYR CYS ARG LYS GLY HIS CYS LYS ARG SEQRES 2 A 32 GLY ASP ARG VAL ARG GLY THR CYS GLY ILE ARG PHE LEU SEQRES 3 A 32 TYR CYS CYS PRO ARG ARG
SHEET 1 A 3 TYR A 5 LYS A 8 0 SHEET 2 A 3 PHE A 25 CYS A 29 -1 O LEU A 26 N ARG A 7 SHEET 3 A 3 ARG A 16 GLY A 22 -1 N ARG A 18 O TYR A 27
SSBOND 1 CYS A 4 CYS A 29 1555 1555 2.03 SSBOND 2 CYS A 6 CYS A 21 1555 1555 2.03 SSBOND 3 CYS A 11 CYS A 28 1555 1555 2.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000