10 20 30 40 50 60 70 80 2GVB - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA-BINDING (VIRAL) 27-JUL-95 2GVB
TITLE REFINED SOLUTION STRUCTURE OF THE TYR 41--> HIS MUTANT OF TITLE 2 THE M13 GENE V PROTEIN. A COMPARISON WITH THE CRYSTAL TITLE 3 STRUCTURE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENE V PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE M13; SOURCE 3 ORGANISM_TAXID: 10870; SOURCE 4 EXPRESSION_SYSTEM_PLASMID: M13
KEYWDS DNA-BINDING (VIRAL)
EXPDTA SOLUTION NMR
AUTHOR P.J.M.FOLKERS,M.NILGES,R.H.A.FOLMER,J.J.PROMPERS, AUTHOR 2 R.N.H.KONINGS,C.W.HILBERS
REVDAT 3 24-FEB-09 2GVB 1 VERSN REVDAT 2 01-APR-03 2GVB 1 JRNL REVDAT 1 15-OCT-95 2GVB 0
SPRSDE 15-OCT-95 2GVB 1GVB
JRNL AUTH J.J.PROMPERS,R.H.FOLMER,M.NILGES,P.J.FOLKERS, JRNL AUTH 2 R.N.KONINGS,C.W.HILBERS JRNL TITL REFINED SOLUTION STRUCTURE OF THE TYR41-->HIS JRNL TITL 2 MUTANT OF THE M13 GENE V PROTEIN. A COMPARISON JRNL TITL 3 WITH THE CRYSTAL STRUCTURE. JRNL REF EUR.J.BIOCHEM. V. 232 506 1995 JRNL REFN ISSN 0014-2956 JRNL PMID 7556200 JRNL DOI 10.1111/J.1432-1033.1995.506ZZ.X
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.M.FOLKERS,M.NILGES,R.H.A.FOLMER,R.N.H.KONINGS, REMARK 1 AUTH 2 C.W.HILBERS REMARK 1 TITL THE SOLUTION STRUCTURE OF THE TYR 41--> HIS MUTANT REMARK 1 TITL 2 OF THE SINGLE-STRANDED DNA BINDING PROTEIN ENCODED REMARK 1 TITL 3 BY GENE V OF THE FILAMENTOUS BACTERIOPHAGE M13 REMARK 1 REF J.MOL.BIOL. V. 236 229 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.J.M.FOLKERS,J.P.M.VAN DUYNHOVEN, REMARK 1 AUTH 2 H.T.M.VAN LIESHOUT,B.J.M.HARMSEN,J.H.VAN BOOM, REMARK 1 AUTH 3 G.I.TESSER,R.N.H.KONINGS,C.W.HILBERS REMARK 1 TITL EXPLORING THE DNA BINDING DOMAIN OF GENE V PROTEIN REMARK 1 TITL 2 ENCODED BY BACTERIOPHAGE M13 WITH THE AID OF REMARK 1 TITL 3 SPIN-LABELED OLIGONUCLEOTIDES IN COMBINATION WITH REMARK 1 TITL 4 H-NMR REMARK 1 REF BIOCHEMISTRY V. 32 9407 1993 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH P.J.M.FOLKERS,J.P.M.VAN DUYNHOVEN,A.J.JONKER, REMARK 1 AUTH 2 B.J.M.HARMSEN,R.N.H.KONINGS,C.W.HILBERS REMARK 1 TITL SEQUENCE-SPECIFIC H-NMR ASSIGNMENT AND SECONDARY REMARK 1 TITL 2 STRUCTURE OF THE TYR 41--> HIS MUTANT OF THE REMARK 1 TITL 3 SINGLE-STRANDED DNA BINDING PROTEIN, GENE V REMARK 1 TITL 4 PROTEIN, ENCODED BY THE FILAMENTOUS BACTERIOPHAGE REMARK 1 TITL 5 M13 REMARK 1 REF EUR.J.BIOCHEM. V. 202 349 1991 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 4 REMARK 1 AUTH P.J.M.FOLKERS,A.P.M.STASSEN,J.P.M.VAN DUYNHOVEN, REMARK 1 AUTH 2 B.J.M.HARMSEN,R.N.H.KONINGS,C.W.HILBERS REMARK 1 TITL CHARACTERIZATION OF WILD-TYPE AND MUTANT M13 GENE REMARK 1 TITL 2 V PROTEINS BY MEANS OF H-NMR REMARK 1 REF EUR.J.BIOCHEM. V. 200 139 1991 REMARK 1 REFN ISSN 0014-2956
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DIANA, X-PLOR REMARK 3 AUTHORS : GUNTERT,BRAUN,WUTHRICH (DIANA), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2GVB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 4 149.70 172.24 REMARK 500 LYS A 7 170.01 -44.15 REMARK 500 SER A 17 106.98 -54.38 REMARK 500 SER A 20 -78.81 -46.91 REMARK 500 ARG A 21 53.25 -148.62 REMARK 500 LEU A 37 21.40 48.98 REMARK 500 GLU A 40 -52.31 70.68 REMARK 500 TYR A 56 99.34 -47.65 REMARK 500 ALA A 57 171.79 -47.37 REMARK 500 MET A 77 117.49 -160.29 REMARK 500 ARG A 80 68.95 174.47 REMARK 500 LEU A 81 121.35 -31.48 REMARK 500 VAL B 4 149.74 172.27 REMARK 500 LYS B 7 170.03 -44.14 REMARK 500 SER B 17 107.02 -54.43 REMARK 500 SER B 20 -78.85 -46.91 REMARK 500 ARG B 21 53.17 -148.56 REMARK 500 LEU B 37 21.35 49.09 REMARK 500 GLU B 40 -52.36 70.61 REMARK 500 TYR B 56 98.08 -47.58 REMARK 500 ALA B 57 171.75 -46.20 REMARK 500 MET B 77 117.60 -160.27 REMARK 500 ARG B 80 69.07 174.39 REMARK 500 LEU B 81 121.31 -31.55 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GVA RELATED DB: PDB
DBREF 2GVB A 1 87 UNP P69544 VHED_BPM13 1 87 DBREF 2GVB B 1 87 UNP P69544 VHED_BPM13 1 87
SEQADV 2GVB HIS A 41 UNP P69544 TYR 41 CONFLICT SEQADV 2GVB HIS B 41 UNP P69544 TYR 41 CONFLICT
SEQRES 1 A 87 MET ILE LYS VAL GLU ILE LYS PRO SER GLN ALA GLN PHE SEQRES 2 A 87 THR THR ARG SER GLY VAL SER ARG GLN GLY LYS PRO TYR SEQRES 3 A 87 SER LEU ASN GLU GLN LEU CYS TYR VAL ASP LEU GLY ASN SEQRES 4 A 87 GLU HIS PRO VAL LEU VAL LYS ILE THR LEU ASP GLU GLY SEQRES 5 A 87 GLN PRO ALA TYR ALA PRO GLY LEU TYR THR VAL HIS LEU SEQRES 6 A 87 SER SER PHE LYS VAL GLY GLN PHE GLY SER LEU MET ILE SEQRES 7 A 87 ASP ARG LEU ARG LEU VAL PRO ALA LYS SEQRES 1 B 87 MET ILE LYS VAL GLU ILE LYS PRO SER GLN ALA GLN PHE SEQRES 2 B 87 THR THR ARG SER GLY VAL SER ARG GLN GLY LYS PRO TYR SEQRES 3 B 87 SER LEU ASN GLU GLN LEU CYS TYR VAL ASP LEU GLY ASN SEQRES 4 B 87 GLU HIS PRO VAL LEU VAL LYS ILE THR LEU ASP GLU GLY SEQRES 5 B 87 GLN PRO ALA TYR ALA PRO GLY LEU TYR THR VAL HIS LEU SEQRES 6 B 87 SER SER PHE LYS VAL GLY GLN PHE GLY SER LEU MET ILE SEQRES 7 B 87 ASP ARG LEU ARG LEU VAL PRO ALA LYS
HELIX 1 H1A LYS A 7 SER A 9 5 3 HELIX 2 H2A HIS A 64 SER A 67 5 4 HELIX 3 H1B LYS B 7 SER B 9 5 3 HELIX 4 H2B HIS B 64 SER B 67 5 4
SHEET 1 S1A 5 PRO A 42 THR A 48 0 SHEET 2 S1A 5 LYS A 24 ASP A 36 -1 O VAL A 35 N VAL A 43 SHEET 3 S1A 5 LYS A 3 ILE A 6 -1 O GLU A 5 N TYR A 34 SHEET 4 S1A 5 GLY A 59 HIS A 64 -1 O TYR A 61 N VAL A 4 SHEET 5 S1A 5 ARG A 82 ALA A 86 -1 O ARG A 82 N HIS A 64 SHEET 1 S1B 5 PHE A 13 SER A 20 0 SHEET 2 S1B 5 LYS A 24 ASP A 36 -1 O TYR A 26 N GLY A 18 SHEET 3 S1B 5 LYS A 3 ILE A 6 -1 O GLU A 5 N TYR A 34 SHEET 4 S1B 5 GLY A 59 HIS A 64 -1 O TYR A 61 N VAL A 4 SHEET 5 S1B 5 ARG A 82 ALA A 86 -1 O ARG A 82 N HIS A 64 SHEET 1 S2A 2 PHE A 68 GLY A 71 0 SHEET 2 S2A 2 SER A 75 ILE A 78 -1 O MET A 77 N LYS A 69 SHEET 1 S1C 5 PRO B 42 THR B 48 0 SHEET 2 S1C 5 LYS B 24 ASP B 36 -1 O VAL B 35 N VAL B 43 SHEET 3 S1C 5 LYS B 3 ILE B 6 -1 O GLU B 5 N TYR B 34 SHEET 4 S1C 5 GLY B 59 HIS B 64 -1 O TYR B 61 N VAL B 4 SHEET 5 S1C 5 ARG B 82 ALA B 86 -1 O ARG B 82 N HIS B 64 SHEET 1 S1D 5 PHE B 13 SER B 20 0 SHEET 2 S1D 5 LYS B 24 ASP B 36 -1 O TYR B 26 N GLY B 18 SHEET 3 S1D 5 LYS B 3 ILE B 6 -1 O GLU B 5 N TYR B 34 SHEET 4 S1D 5 GLY B 59 HIS B 64 -1 O TYR B 61 N VAL B 4 SHEET 5 S1D 5 ARG B 82 ALA B 86 -1 O ARG B 82 N HIS B 64 SHEET 1 S2B 2 PHE B 68 GLY B 71 0 SHEET 2 S2B 2 SER B 75 ILE B 78 -1 O MET B 77 N LYS B 69
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000