2GV4 - Header Asymmetric Unit

HEADER RNA 02-MAY-06 2GV4

TITLE SOLUTION STRUCTURE OF THE POLIOVIRUS 3'-UTR Y-STEM

COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT RNA STRAND 5'-GGACCUCUCGAAAGAGUGGUCC-3'; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: POLIOVIRUS 3'-UTR Y-STEM; COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE IS A MUTANT OF POLIOVIRUS 3'- SOURCE 4 UTR Y-STEM

KEYWDS RNA, POLIOVIRUS, STEM-LOOP, PSEUDO-2-FOLD SYMMETRY

EXPDTA SOLUTION NMR

NUMMDL 13

AUTHOR H.A.HEUS,J.ZOLL,M.TESSARI,F.J.M.VAN KUPPEVELD,W.J.G.MELCHERS

REVDAT 3 24-FEB-09 2GV4 1 VERSN REVDAT 2 08-MAY-07 2GV4 1 JRNL REVDAT 1 20-MAR-07 2GV4 0

JRNL AUTH J.ZOLL,M.TESSARI,F.J.M.VAN KUPPEVELD, JRNL AUTH 2 W.J.G.MELCHERS,H.A.HEUS JRNL TITL BREAKING PSEUDO-TWOFOLD SYMMETRY IN THE POLIOVIRUS JRNL TITL 2 3'-UTR Y-STEM BY RESTORING WATSON-CRICK BASE PAIRS. JRNL REF RNA V. 13 781 2007 JRNL REFN ISSN 1355-8382 JRNL PMID 17449731 JRNL DOI 10.1261/RNA.375607

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : A.T. BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2GV4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB037586.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 300; 300 REMARK 210 PH : 6.8; 6.8; 6.8 REMARK 210 IONIC STRENGTH : 5 MM; 5 MM; 5 MM REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM RNA, PH 6.8; 2MM RNA PH REMARK 210 6.8; 2MM RNA, 27 MG/ML REMARK 210 PHILAMENTOUS PHAGE PF1 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, 2D TOCSY, REMARK 210 2D-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1, NMRPIPE 2.1, SPARKY REMARK 210 3.106, X-PLOR 3.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 13 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9 C A 7 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 10 C A 7 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 11 C A 7 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 13 C A 7 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GRW RELATED DB: PDB

DBREF 2GV4 A 1 22 PDB 2GV4 2GV4 1 22

SEQRES 1 A 22 G G A C C U C U C G A A A SEQRES 2 A 22 G A G U G G U C C

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000