10 20 30 40 50 60 70 80 2GUL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 01-MAY-06 2GUL
TITLE THEORETICAL MODELLING OF ASPARTATE SEMIALDEHYDE TITLE 2 DEHYDROGENASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE-SEMIALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASA DEHYDROGENASE, ASADH; COMPND 5 EC: 1.2.1.11
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 STRAIN: H37RV
KEYWDS ASPARTATE-BETA-SEMIALDEHYDE DEHYDROGENASE
EXPDTA THEORETICAL MODEL
AUTHOR A.ANAND,R.GHATUARY
REVDAT 1 09-MAY-06 2GUL 0
JRNL AUTH A.ANAND,R.GHATUARY JRNL TITL THEORETICAL MODELLING OF ASPARTATE SEMIALDEHYDE JRNL TITL 2 DEHYDROGENASE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SWISSPDB 3.7 REMARK 3 AUTHORS : NICOLAS GUEX, MANUEL PEITSCH, TORSTEN SCHWEDE, REMARK 3 ALEXANDRE DIEMAND REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE BOND BETWEEN HD1 AND ND1 OF HIS REMARK 3 143, HIS 256 IS LONG. PEPTIDE BOND BETWEEN LEU 151 AND VAL 152 REMARK 3 IS ALSO LONG
REMARK 4 REMARK 4 2GUL COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-2006. REMARK 100 THE RCSB ID CODE IS RCSB037568.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: ASPARTATE-BETA-SEMIALDEHYDE DEHYDROGENASE FROM REMARK 220 MYCOBACTERIUM TUBERCULOSIS H37 RV
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 OD1 ASN A 129 CG MET A 133 0.38 REMARK 500 CB ARG A 147 CB VAL A 153 0.82 REMARK 500 CA ARG A 150 CG1 VAL A 152 0.83 REMARK 500 CB ARG A 150 CG1 VAL A 152 0.84 REMARK 500 C ARG A 147 CG1 VAL A 153 0.87 REMARK 500 CA LYS A 140 CB ALA A 165 0.95 REMARK 500 O ARG A 150 CG2 VAL A 152 0.97 REMARK 500 N LEU A 148 CG1 VAL A 153 0.98 REMARK 500 CB ARG A 147 CA VAL A 153 1.14 REMARK 500 CG ARG A 147 CB VAL A 153 1.18 REMARK 500 CA ARG A 147 CA VAL A 153 1.19 REMARK 500 N HIS A 143 O LEU A 164 1.21 REMARK 500 O MET A 133 CD PRO A 137 1.25 REMARK 500 C ARG A 150 CG2 VAL A 152 1.26 REMARK 500 O VAL A 138 O SER A 162 1.28 REMARK 500 C ARG A 150 CB VAL A 152 1.29 REMARK 500 C LYS A 140 CB ALA A 165 1.36 REMARK 500 CB LYS A 140 CB ALA A 165 1.36 REMARK 500 OD1 ASN A 129 CB MET A 133 1.38 REMARK 500 CD ARG A 147 CG2 VAL A 153 1.39 REMARK 500 CA ARG A 147 CB VAL A 153 1.49 REMARK 500 CG ARG A 147 CG2 VAL A 153 1.50 REMARK 500 CG ASN A 129 CG MET A 133 1.59 REMARK 500 CB ARG A 147 C VAL A 153 1.62 REMARK 500 CA LYS A 140 CA ALA A 165 1.64 REMARK 500 CB HIS A 143 N GLY A 166 1.64 REMARK 500 C ARG A 150 CG1 VAL A 152 1.68 REMARK 500 O LYS A 140 O LEU A 164 1.71 REMARK 500 O MET A 133 CG PRO A 137 1.76 REMARK 500 CA LEU A 139 O SER A 162 1.76 REMARK 500 C VAL A 138 O SER A 162 1.77 REMARK 500 CB ARG A 147 CG2 VAL A 153 1.77 REMARK 500 O VAL A 141 O GLY A 163 1.79 REMARK 500 CA ARG A 147 CG1 VAL A 153 1.83 REMARK 500 O ARG A 147 CG1 VAL A 153 1.83 REMARK 500 O VAL A 138 C SER A 162 1.84 REMARK 500 CG ASN A 129 CB MET A 133 1.86 REMARK 500 O LYS A 140 CB ALA A 165 1.87 REMARK 500 C ARG A 147 CB VAL A 153 1.89 REMARK 500 N ARG A 150 CG1 VAL A 152 1.90 REMARK 500 CG HIS A 143 N GLY A 166 1.91 REMARK 500 NH1 ARG A 147 CB ALA A 168 1.96 REMARK 500 O LYS A 140 CA ALA A 165 1.97 REMARK 500 N LEU A 139 O SER A 162 1.98 REMARK 500 CA ARG A 150 CB VAL A 152 1.98 REMARK 500 ND2 ASN A 129 CB MET A 133 1.99 REMARK 500 C LYS A 140 CA ALA A 165 1.99 REMARK 500 N HIS A 143 C LEU A 164 1.99 REMARK 500 O LYS A 140 C LEU A 164 2.02 REMARK 500 CB HIS A 143 C ALA A 165 2.05 REMARK 500 CB ARG A 150 CB VAL A 152 2.05 REMARK 500 OD1 ASN A 129 SD MET A 133 2.07 REMARK 500 O ARG A 150 CB VAL A 152 2.08 REMARK 500 O LYS A 140 N ALA A 165 2.09 REMARK 500 O LEU A 139 N ALA A 165 2.12 REMARK 500 O ARG A 147 N VAL A 153 2.12 REMARK 500 N VAL A 141 O GLY A 163 2.13 REMARK 500 O VAL A 141 C GLY A 163 2.14 REMARK 500 CG ARG A 147 CG1 VAL A 153 2.15 REMARK 500 CG ARG A 150 CG1 VAL A 152 2.15 REMARK 500 CA ARG A 147 N VAL A 153 2.16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 137 CG PRO A 137 CD -0.227 REMARK 500 PRO A 239 CG PRO A 239 CD -0.226 REMARK 500 VAL A 243 C SER A 244 N 0.137 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 244 C - N - CA ANGL. DEV. = 18.9 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 176 -104.72 164.11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 243 SER A 244 -116.11
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BRM RELATED DB: PDB REMARK 900 ASPARTATE BETA-SEMIALDEHYDE DEHYDROGENASE FROM ESCHERICHIA REMARK 900 COLI REMARK 900 RELATED ID: 1MB4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ASPARTATE SEMIALDEHYDE DEHYDROGENASE REMARK 900 FROM VIBRIO CHOLERAE WITH NADP AND S-METHYL-L-CYSTEINE REMARK 900 SULFOXIDE REMARK 900 RELATED ID: 1GL3 RELATED DB: PDB REMARK 900 ASPARTATE BETA-SEMIALDEHYDE DEHYDROGENASE IN COMPLEX WITH REMARK 900 NADP AND SUBSTRATE ANALOGUE S-METHYL CYSTEINE SULFOXIDE
DBREF 2GUL A 1 345 UNP P0A542 DHAS_MYCTU 1 345
SEQRES 1 A 345 MET GLY LEU SER ILE GLY ILE VAL GLY ALA THR GLY GLN SEQRES 2 A 345 VAL GLY GLN VAL MET ARG THR LEU LEU ASP GLU ARG ASP SEQRES 3 A 345 PHE PRO ALA SER ALA VAL ARG PHE PHE ALA SER ALA ARG SEQRES 4 A 345 SER GLN GLY ARG LYS LEU ALA PHE ARG GLY GLN GLU ILE SEQRES 5 A 345 GLU VAL GLU ASP ALA GLU THR ALA ASP PRO SER GLY LEU SEQRES 6 A 345 ASP ILE ALA LEU PHE SER ALA GLY SER ALA MET SER LYS SEQRES 7 A 345 VAL GLN ALA PRO ARG PHE ALA ALA ALA GLY VAL THR VAL SEQRES 8 A 345 ILE ASP ASN SER SER ALA TRP ARG LYS ASP PRO ASP VAL SEQRES 9 A 345 PRO LEU VAL VAL SER GLU VAL ASN PHE GLU ARG ASP ALA SEQRES 10 A 345 HIS ARG ARG PRO LYS GLY ILE ILE ALA ASN PRO ASN CYS SEQRES 11 A 345 THR THR MET ALA ALA MET PRO VAL LEU LYS VAL LEU HIS SEQRES 12 A 345 ASP GLU ALA ARG LEU VAL ARG LEU VAL VAL SER SER TYR SEQRES 13 A 345 GLN ALA VAL SER GLY SER GLY LEU ALA GLY VAL ALA GLU SEQRES 14 A 345 LEU ALA GLU GLN ALA ARG ALA VAL ILE GLY GLY ALA GLU SEQRES 15 A 345 GLN LEU VAL TYR ASP GLY GLY ALA LEU GLU PHE PRO PRO SEQRES 16 A 345 PRO ASN THR TYR VAL ALA PRO ILE ALA PHE ASN VAL VAL SEQRES 17 A 345 PRO LEU ALA GLY SER LEU VAL ASP ASP GLY SER GLY GLU SEQRES 18 A 345 THR ASP GLU ASP GLN LYS LEU ARG PHE GLU SER ARG LYS SEQRES 19 A 345 ILE LEU GLY ILE PRO ASP LEU LEU VAL SER GLY THR CYS SEQRES 20 A 345 VAL ARG VAL PRO VAL PHE THR GLY HIS SER LEU SER ILE SEQRES 21 A 345 ASN ALA GLU PHE ALA GLN PRO LEU SER PRO GLU ARG ALA SEQRES 22 A 345 ARG GLU LEU LEU ASP GLY ALA THR GLY VAL GLN LEU VAL SEQRES 23 A 345 ASP VAL PRO THR PRO LEU ALA ALA ALA GLY VAL ASP GLU SEQRES 24 A 345 SER LEU VAL GLY ARG ILE ARG ARG ASP PRO GLY VAL PRO SEQRES 25 A 345 ASP GLY ARG GLY LEU ALA LEU PHE VAL SER GLY ASP ASN SEQRES 26 A 345 LEU ARG LYS GLY ALA ALA LEU ASN THR ILE GLN ILE ALA SEQRES 27 A 345 GLU LEU LEU THR ALA ASP LEU
HELIX 1 1 THR A 11 ARG A 25 1 15 HELIX 2 2 ASP A 56 ASP A 61 1 6 HELIX 3 3 SER A 71 VAL A 79 1 9 HELIX 4 4 VAL A 79 ALA A 85 1 7 HELIX 5 5 VAL A 108 GLY A 123 1 16 HELIX 6 6 ALA A 134 LEU A 139 1 6 HELIX 7 7 LEU A 142 LEU A 151 1 10 HELIX 8 8 LEU A 184 GLY A 188 5 5 HELIX 9 9 GLY A 220 ASP A 225 1 6 HELIX 10 10 ASP A 225 GLU A 231 1 7 HELIX 11 11 SER A 269 THR A 281 1 13 HELIX 12 12 ALA A 293 ASP A 298 1 6 HELIX 13 13 ALA A 331 LEU A 345 1 15
SHEET 1 A 6 GLU A 51 GLU A 53 0 SHEET 2 A 6 ALA A 31 ALA A 36 1 N ALA A 36 O ILE A 52 SHEET 3 A 6 GLY A 2 GLY A 6 1 N LEU A 3 O ALA A 31 SHEET 4 A 6 LEU A 65 ALA A 68 1 O LEU A 65 N SER A 4 SHEET 5 A 6 THR A 90 ASP A 93 1 O ILE A 92 N ASP A 66 SHEET 6 A 6 ALA A 126 PRO A 128 1 O ASN A 127 N VAL A 91 SHEET 1 B 6 GLY A 245 ARG A 249 0 SHEET 2 B 6 VAL A 177 GLN A 183 1 N GLN A 183 O VAL A 248 SHEET 3 B 6 GLY A 255 GLU A 263 -1 O SER A 259 N GLY A 180 SHEET 4 B 6 GLY A 314 ASN A 325 -1 O ALA A 318 N ALA A 262 SHEET 5 B 6 ARG A 304 ARG A 306 -1 N ARG A 306 O VAL A 321 SHEET 6 B 6 LEU A 285 ASP A 287 1 N LEU A 285 O ILE A 305 SHEET 1 C 5 GLY A 245 ARG A 249 0 SHEET 2 C 5 VAL A 177 GLN A 183 1 N GLN A 183 O VAL A 248 SHEET 3 C 5 GLY A 255 GLU A 263 -1 O SER A 259 N GLY A 180 SHEET 4 C 5 GLY A 314 ASN A 325 -1 O ALA A 318 N ALA A 262 SHEET 5 C 5 GLY A 310 VAL A 311 -1 N VAL A 311 O LEU A 317
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000