10 20 30 40 50 60 70 80 2GU4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 28-APR-06 2GU4
TITLE E. COLI METHIONINE AMINOPEPTIDASE IN COMPLEX WITH NLEP, 1: TITLE 2 0.5, DI-METALATED
COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAP, PEPTIDASE M; COMPND 5 EC: 3.4.11.18; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MAP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEMEX-1
KEYWDS MONO-METALATED, MONONUCLEAR, MN(II)-FORM, HYDROLASE, ENZYME- KEYWDS 2 INHIBITOR COMPLEX, METALLOENZYME
EXPDTA X-RAY DIFFRACTION
AUTHOR Q.Z.YE
REVDAT 2 24-FEB-09 2GU4 1 VERSN REVDAT 1 04-JUL-06 2GU4 0
JRNL AUTH Q.Z.YE,S.X.XIE,Z.Q.MA,M.HUANG,R.P.HANZLIK JRNL TITL STRUCTURAL BASIS OF CATALYSIS BY MONOMETALATED JRNL TITL 2 METHIONINE AMINOPEPTIDASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 9470 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16769889 JRNL DOI 10.1073/PNAS.0602433103
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 42194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2111 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 42 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 942 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 46 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4062 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 321 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.59200 REMARK 3 B22 (A**2) : -3.67700 REMARK 3 B33 (A**2) : 1.08500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.83400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.096 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.469 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.054 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.986 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 40.10 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NLP_XPLOR_PAR.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR:DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 5 : NLP_XPLOR_TOP.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2GU4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB037551.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42210 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.29200 REMARK 200 R SYM FOR SHELL (I) : 0.29200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1XNZ REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 20000, 0.1 M MES (PH 6.5) , REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.01700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ALA B 2 REMARK 465 SER B 3
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 55 -162.18 -121.89 REMARK 500 ASN A 74 -110.26 44.04 REMARK 500 ASN A 192 85.59 -155.97 REMARK 500 TRP A 221 -56.47 -121.17 REMARK 500 ALA B 55 -166.68 -124.96 REMARK 500 LEU B 60 107.78 -56.16 REMARK 500 ASN B 74 -106.50 46.00 REMARK 500 GLU B 204 64.44 -151.32 REMARK 500 TRP B 221 -52.29 -123.99 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 266 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 97 OD1 REMARK 620 2 ASP A 108 OD1 85.7 REMARK 620 3 GLU A 235 OE1 95.5 86.7 REMARK 620 4 NLP A3808 O2 158.1 115.2 92.2 REMARK 620 5 NLP A3808 N 105.4 91.2 158.8 69.7 REMARK 620 6 ASP A 97 OD2 56.5 124.6 131.1 103.5 66.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 265 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 108 OD2 REMARK 620 2 GLU A 235 OE2 87.4 REMARK 620 3 NLP A3808 O2 99.3 126.6 REMARK 620 4 HIS A 171 NE2 98.5 121.0 110.3 REMARK 620 5 GLU A 204 OE2 163.9 77.2 93.6 85.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 266 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 97 OD1 REMARK 620 2 ASP B 97 OD2 57.0 REMARK 620 3 GLU B 235 OE1 105.8 106.0 REMARK 620 4 ASP B 108 OD1 81.3 137.8 90.1 REMARK 620 5 NLP B3808 O2 155.9 102.0 90.8 116.8 REMARK 620 6 NLP B3808 N 95.3 89.5 158.4 88.1 70.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 265 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 171 NE2 REMARK 620 2 ASP B 108 OD2 101.5 REMARK 620 3 GLU B 204 OE2 86.2 159.6 REMARK 620 4 GLU B 235 OE2 120.0 82.8 77.0 REMARK 620 5 NLP B3808 O2 113.8 101.1 92.7 124.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 1 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 74 O REMARK 620 2 VAL A 76 O 95.3 REMARK 620 3 HOH A3834 O 133.1 111.2 REMARK 620 4 SER A 231 O 99.1 128.7 93.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 1 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 76 O REMARK 620 2 HOH B3949 O 112.0 REMARK 620 3 SER B 231 O 123.9 94.7 REMARK 620 4 ASN B 74 O 97.2 137.6 93.5 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 265 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 266 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 265 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 266 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NLP A 3808 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NLP B 3808
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GTX RELATED DB: PDB REMARK 900 E. COLI METHIONINE AMINOPEPTIDASE IN COMPLEX WITH NLEP, 1: REMARK 900 0.25, MONO-METALATED REMARK 900 RELATED ID: 2GU5 RELATED DB: PDB REMARK 900 E. COLI METHIONINE AMINOPEPTIDASE IN COMPLEX WITH NLEP, 1: REMARK 900 1, DI-METALATED REMARK 900 RELATED ID: 2GU6 RELATED DB: PDB REMARK 900 E. COLI METHIONINE AMINOPEPTIDASE IN COMPLEX WITH NLEP, 1: REMARK 900 2, DI-METALATED REMARK 900 RELATED ID: 2GU7 RELATED DB: PDB REMARK 900 E. COLI METHIONINE AMINOPEPTIDASE UNLIGANDED, 1:0.5
DBREF 2GU4 A 2 264 UNP P0AE18 AMPM_ECOLI 2 264 DBREF 2GU4 B 2 264 UNP P0AE18 AMPM_ECOLI 2 264
SEQADV 2GU4 SER A 3 UNP P0AE18 ILE 3 ENGINEERED SEQADV 2GU4 SER B 3 UNP P0AE18 ILE 3 ENGINEERED
SEQRES 1 A 263 ALA SER SER ILE LYS THR PRO GLU ASP ILE GLU LYS MET SEQRES 2 A 263 ARG VAL ALA GLY ARG LEU ALA ALA GLU VAL LEU GLU MET SEQRES 3 A 263 ILE GLU PRO TYR VAL LYS PRO GLY VAL SER THR GLY GLU SEQRES 4 A 263 LEU ASP ARG ILE CYS ASN ASP TYR ILE VAL ASN GLU GLN SEQRES 5 A 263 HIS ALA VAL SER ALA CYS LEU GLY TYR HIS GLY TYR PRO SEQRES 6 A 263 LYS SER VAL CYS ILE SER ILE ASN GLU VAL VAL CYS HIS SEQRES 7 A 263 GLY ILE PRO ASP ASP ALA LYS LEU LEU LYS ASP GLY ASP SEQRES 8 A 263 ILE VAL ASN ILE ASP VAL THR VAL ILE LYS ASP GLY PHE SEQRES 9 A 263 HIS GLY ASP THR SER LYS MET PHE ILE VAL GLY LYS PRO SEQRES 10 A 263 THR ILE MET GLY GLU ARG LEU CYS ARG ILE THR GLN GLU SEQRES 11 A 263 SER LEU TYR LEU ALA LEU ARG MET VAL LYS PRO GLY ILE SEQRES 12 A 263 ASN LEU ARG GLU ILE GLY ALA ALA ILE GLN LYS PHE VAL SEQRES 13 A 263 GLU ALA GLU GLY PHE SER VAL VAL ARG GLU TYR CYS GLY SEQRES 14 A 263 HIS GLY ILE GLY ARG GLY PHE HIS GLU GLU PRO GLN VAL SEQRES 15 A 263 LEU HIS TYR ASP SER ARG GLU THR ASN VAL VAL LEU LYS SEQRES 16 A 263 PRO GLY MET THR PHE THR ILE GLU PRO MET VAL ASN ALA SEQRES 17 A 263 GLY LYS LYS GLU ILE ARG THR MET LYS ASP GLY TRP THR SEQRES 18 A 263 VAL LYS THR LYS ASP ARG SER LEU SER ALA GLN TYR GLU SEQRES 19 A 263 HIS THR ILE VAL VAL THR ASP ASN GLY CYS GLU ILE LEU SEQRES 20 A 263 THR LEU ARG LYS ASP ASP THR ILE PRO ALA ILE ILE SER SEQRES 21 A 263 HIS ASP GLU SEQRES 1 B 263 ALA SER SER ILE LYS THR PRO GLU ASP ILE GLU LYS MET SEQRES 2 B 263 ARG VAL ALA GLY ARG LEU ALA ALA GLU VAL LEU GLU MET SEQRES 3 B 263 ILE GLU PRO TYR VAL LYS PRO GLY VAL SER THR GLY GLU SEQRES 4 B 263 LEU ASP ARG ILE CYS ASN ASP TYR ILE VAL ASN GLU GLN SEQRES 5 B 263 HIS ALA VAL SER ALA CYS LEU GLY TYR HIS GLY TYR PRO SEQRES 6 B 263 LYS SER VAL CYS ILE SER ILE ASN GLU VAL VAL CYS HIS SEQRES 7 B 263 GLY ILE PRO ASP ASP ALA LYS LEU LEU LYS ASP GLY ASP SEQRES 8 B 263 ILE VAL ASN ILE ASP VAL THR VAL ILE LYS ASP GLY PHE SEQRES 9 B 263 HIS GLY ASP THR SER LYS MET PHE ILE VAL GLY LYS PRO SEQRES 10 B 263 THR ILE MET GLY GLU ARG LEU CYS ARG ILE THR GLN GLU SEQRES 11 B 263 SER LEU TYR LEU ALA LEU ARG MET VAL LYS PRO GLY ILE SEQRES 12 B 263 ASN LEU ARG GLU ILE GLY ALA ALA ILE GLN LYS PHE VAL SEQRES 13 B 263 GLU ALA GLU GLY PHE SER VAL VAL ARG GLU TYR CYS GLY SEQRES 14 B 263 HIS GLY ILE GLY ARG GLY PHE HIS GLU GLU PRO GLN VAL SEQRES 15 B 263 LEU HIS TYR ASP SER ARG GLU THR ASN VAL VAL LEU LYS SEQRES 16 B 263 PRO GLY MET THR PHE THR ILE GLU PRO MET VAL ASN ALA SEQRES 17 B 263 GLY LYS LYS GLU ILE ARG THR MET LYS ASP GLY TRP THR SEQRES 18 B 263 VAL LYS THR LYS ASP ARG SER LEU SER ALA GLN TYR GLU SEQRES 19 B 263 HIS THR ILE VAL VAL THR ASP ASN GLY CYS GLU ILE LEU SEQRES 20 B 263 THR LEU ARG LYS ASP ASP THR ILE PRO ALA ILE ILE SER SEQRES 21 B 263 HIS ASP GLU
HET MN A 265 1 HET MN A 266 1 HET MN B 265 1 HET MN B 266 1 HET NA A 1 1 HET NA B 1 1 HET NLP A3808 10 HET NLP B3808 10
HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETNAM NLP (1-AMINO-PENTYL)-PHOSPHONIC ACID
HETSYN NLP NORLEUCINE PHOSPHONATE
FORMUL 3 MN 4(MN 2+) FORMUL 7 NA 2(NA 1+) FORMUL 9 NLP 2(C5 H14 N O3 P) FORMUL 11 HOH *321(H2 O)
HELIX 1 1 THR A 7 GLU A 29 1 23 HELIX 2 2 PRO A 30 VAL A 32 5 3 HELIX 3 3 SER A 37 GLU A 52 1 16 HELIX 4 4 GLY A 61 TYR A 65 5 5 HELIX 5 5 THR A 119 VAL A 140 1 22 HELIX 6 6 ASN A 145 GLU A 160 1 16 HELIX 7 7 THR B 7 GLU B 29 1 23 HELIX 8 8 PRO B 30 VAL B 32 5 3 HELIX 9 9 SER B 37 GLU B 52 1 16 HELIX 10 10 GLY B 61 TYR B 65 5 5 HELIX 11 11 THR B 119 ARG B 138 1 20 HELIX 12 12 ASN B 145 GLU B 160 1 16
SHEET 1 A 3 VAL A 56 SER A 57 0 SHEET 2 A 3 ILE A 93 LYS A 102 -1 O ILE A 101 N VAL A 56 SHEET 3 A 3 CYS A 70 ILE A 73 -1 N CYS A 70 O ASP A 97 SHEET 1 B 3 VAL A 56 SER A 57 0 SHEET 2 B 3 ILE A 93 LYS A 102 -1 O ILE A 101 N VAL A 56 SHEET 3 B 3 PHE A 105 ILE A 114 -1 O PHE A 113 N VAL A 94 SHEET 1 C 3 VAL A 76 CYS A 78 0 SHEET 2 C 3 VAL A 223 THR A 225 -1 O VAL A 223 N VAL A 77 SHEET 3 C 3 ILE A 214 THR A 216 -1 N ARG A 215 O LYS A 224 SHEET 1 D 3 SER A 163 VAL A 164 0 SHEET 2 D 3 MET A 206 ASN A 208 -1 O ASN A 208 N SER A 163 SHEET 3 D 3 SER A 231 GLN A 233 -1 O ALA A 232 N VAL A 207 SHEET 1 E 2 GLY A 170 GLY A 172 0 SHEET 2 E 2 GLU A 179 VAL A 183 -1 O VAL A 183 N GLY A 170 SHEET 1 F 4 THR A 200 ILE A 203 0 SHEET 2 F 4 HIS A 236 THR A 241 -1 O ILE A 238 N PHE A 201 SHEET 3 F 4 GLY A 244 ILE A 247 -1 O GLU A 246 N VAL A 239 SHEET 4 F 4 ILE A 259 SER A 261 -1 O ILE A 260 N CYS A 245 SHEET 1 G 3 VAL B 56 SER B 57 0 SHEET 2 G 3 ILE B 93 LYS B 102 -1 O ILE B 101 N VAL B 56 SHEET 3 G 3 CYS B 70 ILE B 73 -1 N CYS B 70 O ASP B 97 SHEET 1 H 3 VAL B 56 SER B 57 0 SHEET 2 H 3 ILE B 93 LYS B 102 -1 O ILE B 101 N VAL B 56 SHEET 3 H 3 PHE B 105 ILE B 114 -1 O THR B 109 N VAL B 98 SHEET 1 I 3 VAL B 76 CYS B 78 0 SHEET 2 I 3 VAL B 223 THR B 225 -1 O VAL B 223 N VAL B 77 SHEET 3 I 3 ILE B 214 THR B 216 -1 N ARG B 215 O LYS B 224 SHEET 1 J 3 SER B 163 VAL B 164 0 SHEET 2 J 3 MET B 206 ASN B 208 -1 O ASN B 208 N SER B 163 SHEET 3 J 3 SER B 231 GLN B 233 -1 O ALA B 232 N VAL B 207 SHEET 1 K 2 GLY B 170 GLY B 172 0 SHEET 2 K 2 GLU B 179 VAL B 183 -1 O VAL B 183 N GLY B 170 SHEET 1 L 4 THR B 200 ILE B 203 0 SHEET 2 L 4 HIS B 236 VAL B 240 -1 O ILE B 238 N PHE B 201 SHEET 3 L 4 GLY B 244 ILE B 247 -1 O GLU B 246 N VAL B 239 SHEET 4 L 4 ILE B 259 SER B 261 -1 O ILE B 260 N CYS B 245
LINK MN MN A 266 OD1 ASP A 97 1555 1555 2.21 LINK MN MN A 266 OD1 ASP A 108 1555 1555 2.29 LINK MN MN A 266 OE1 GLU A 235 1555 1555 2.19 LINK MN MN A 265 OD2 ASP A 108 1555 1555 2.05 LINK MN MN A 265 OE2 GLU A 235 1555 1555 2.15 LINK MN MN B 266 OD1 ASP B 97 1555 1555 2.29 LINK MN MN B 266 OD2 ASP B 97 1555 1555 2.29 LINK MN MN B 265 NE2 HIS B 171 1555 1555 2.24 LINK MN MN B 265 OD2 ASP B 108 1555 1555 2.09 LINK MN MN B 265 OE2 GLU B 204 1555 1555 2.29 LINK MN MN B 265 OE2 GLU B 235 1555 1555 2.13 LINK MN MN B 266 OE1 GLU B 235 1555 1555 2.20 LINK NA NA A 1 O ASN A 74 1555 1555 2.26 LINK NA NA A 1 O VAL A 76 1555 1555 2.31 LINK NA NA A 1 O HOH A3834 1555 1555 2.33 LINK NA NA A 1 O SER A 231 1555 1555 2.29 LINK MN MN A 265 O2 NLP A3808 1555 1555 1.89 LINK MN MN A 265 NE2 HIS A 171 1555 1555 2.36 LINK MN MN A 265 OE2 GLU A 204 1555 1555 2.37 LINK MN MN A 266 O2 NLP A3808 1555 1555 2.59 LINK MN MN A 266 N NLP A3808 1555 1555 2.47 LINK MN MN A 266 OD2 ASP A 97 1555 1555 2.41 LINK NA NA B 1 O VAL B 76 1555 1555 2.34 LINK NA NA B 1 O HOH B3949 1555 1555 2.24 LINK NA NA B 1 O SER B 231 1555 1555 2.32 LINK NA NA B 1 O ASN B 74 1555 1555 2.34 LINK MN MN B 265 O2 NLP B3808 1555 1555 1.89 LINK MN MN B 266 OD1 ASP B 108 1555 1555 2.33 LINK MN MN B 266 O2 NLP B3808 1555 1555 2.75 LINK MN MN B 266 N NLP B3808 1555 1555 2.15
CISPEP 1 GLU A 180 PRO A 181 0 0.04 CISPEP 2 GLU B 180 PRO B 181 0 0.11
SITE 1 AC1 6 ASP A 108 HIS A 171 GLU A 204 GLU A 235 SITE 2 AC1 6 MN A 266 NLP A3808 SITE 1 AC2 5 ASP A 97 ASP A 108 GLU A 235 MN A 265 SITE 2 AC2 5 NLP A3808 SITE 1 AC3 6 ASP B 108 HIS B 171 GLU B 204 GLU B 235 SITE 2 AC3 6 MN B 266 NLP B3808 SITE 1 AC4 5 ASP B 97 ASP B 108 GLU B 235 MN B 265 SITE 2 AC4 5 NLP B3808 SITE 1 AC5 4 ASN A 74 VAL A 76 SER A 231 HOH A3834 SITE 1 AC6 4 ASN B 74 VAL B 76 SER B 231 HOH B3949 SITE 1 AC7 13 CYS A 59 HIS A 79 ASP A 97 THR A 99 SITE 2 AC7 13 ASP A 108 HIS A 171 PHE A 177 HIS A 178 SITE 3 AC7 13 GLU A 204 GLU A 235 MN A 265 MN A 266 SITE 4 AC7 13 HOH A3901 SITE 1 AC8 14 TYR B 62 HIS B 79 ASP B 97 THR B 99 SITE 2 AC8 14 ASP B 108 HIS B 171 PHE B 177 HIS B 178 SITE 3 AC8 14 GLU B 204 GLU B 235 MN B 265 MN B 266 SITE 4 AC8 14 HOH B3939 HOH B3950
CRYST1 49.704 64.034 76.347 90.00 108.10 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020119 0.000000 0.006576 0.00000
SCALE2 0.000000 0.015617 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013780 0.00000