10 20 30 40 50 60 70 80 2GTO - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 28-APR-06 2GTO
TITLE OXIDIZED FORM OF ADAP HSH3-N
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FYN-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HSH3-N (OXIDIZED); COMPND 5 SYNONYM: ADAP, FYN-T-BINDING PROTEIN, FYB-120/130, COMPND 6 P120/P130, SLP-76-ASSOCIATED PHOSPHOPROTEIN, SLAP-130; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FYB, SLAP130; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS HELICALLY EXTENDED SH3 DOMAIN (HSH3), SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.FREUND,J.ZIMMERMANN,R.KUEHNE
REVDAT 3 24-FEB-09 2GTO 1 VERSN REVDAT 2 26-JUN-07 2GTO 1 JRNL REVDAT 1 05-JUN-07 2GTO 0
JRNL AUTH J.ZIMMERMANN,R.KUHNE,M.SYLVESTER,C.FREUND JRNL TITL REDOX-REGULATED CONFORMATIONAL CHANGES IN AN SH3 JRNL TITL 2 DOMAIN JRNL REF BIOCHEMISTRY V. 46 6971 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17511475 JRNL DOI 10.1021/BI700437R
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.ZIMMERMANN,C.FREUND REMARK 1 TITL NMR ASSIGNMENT OF THE REDUCED AND OXIDIZED FORMS REMARK 1 TITL 2 OF THE HUMAN ADAP HSH3-1 DOMAIN. REMARK 1 REF J.BIOMOL.NMR V. 32 94 2005 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 16041492 REMARK 1 DOI 10.1007/S10858-005-3984-1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2GTO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB037536.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : UNIFORM (RANDOM) LABELING REMARK 210 WITH 15N; UNIFORM (RANDOM) REMARK 210 LABELING WITH 15N, 13C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, AZARA, ANSIG 3.3, X- REMARK 210 PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING WITH REMARK 210 XPLOR NHI FOLLOWED BY WATER REMARK 210 REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : CLOSEST TO AVERAGE AFTER REMARK 210 WATER REFINEMENT REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 16 CYS A 35 CB CYS A 35 SG 0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 4 -63.38 -145.68 REMARK 500 1 GLU A 7 87.17 58.05 REMARK 500 1 GLU A 9 -153.60 -114.55 REMARK 500 1 LYS A 20 75.48 60.84 REMARK 500 1 THR A 22 104.94 -56.21 REMARK 500 1 CYS A 35 178.56 70.29 REMARK 500 1 PRO A 61 -26.81 -38.50 REMARK 500 1 LEU A 91 84.56 64.72 REMARK 500 1 LEU A 95 72.75 57.55 REMARK 500 2 LYS A 2 -83.47 -124.52 REMARK 500 2 GLU A 4 -36.57 -132.69 REMARK 500 2 LYS A 20 74.44 53.92 REMARK 500 2 THR A 22 109.78 -56.33 REMARK 500 2 CYS A 35 169.47 70.91 REMARK 500 2 SER A 45 40.30 -81.07 REMARK 500 2 PRO A 61 105.40 -46.74 REMARK 500 2 GLU A 62 -58.58 -162.94 REMARK 500 2 LEU A 89 -63.59 -103.06 REMARK 500 2 LEU A 95 -51.59 -165.33 REMARK 500 3 LYS A 2 -50.80 -141.76 REMARK 500 3 LYS A 6 -49.20 179.37 REMARK 500 3 GLU A 7 74.99 -178.27 REMARK 500 3 LYS A 20 78.62 56.29 REMARK 500 3 CYS A 35 162.87 72.64 REMARK 500 3 LEU A 91 -73.10 -101.03 REMARK 500 3 LYS A 92 52.39 -166.76 REMARK 500 3 ASP A 94 -96.21 55.20 REMARK 500 4 GLU A 4 115.10 64.59 REMARK 500 4 LYS A 10 6.15 -67.74 REMARK 500 4 LYS A 20 81.10 55.35 REMARK 500 4 THR A 22 96.07 46.83 REMARK 500 4 CYS A 35 167.74 74.32 REMARK 500 4 SER A 45 47.07 -81.12 REMARK 500 4 PRO A 61 -28.54 -34.20 REMARK 500 4 LYS A 93 -44.19 -148.81 REMARK 500 5 LYS A 10 -60.82 -107.74 REMARK 500 5 LYS A 20 75.22 65.66 REMARK 500 5 THR A 22 84.70 -68.35 REMARK 500 5 GLN A 26 -81.48 -133.83 REMARK 500 5 VAL A 27 152.77 178.74 REMARK 500 5 CYS A 35 175.87 58.39 REMARK 500 5 PRO A 61 -37.46 -36.24 REMARK 500 6 GLU A 4 170.41 65.83 REMARK 500 6 LYS A 20 74.39 59.94 REMARK 500 6 THR A 22 90.51 -69.42 REMARK 500 6 CYS A 35 -179.14 68.10 REMARK 500 6 GLU A 62 -24.62 72.20 REMARK 500 6 LYS A 90 -49.09 -177.47 REMARK 500 6 LYS A 93 38.45 -146.22 REMARK 500 7 LYS A 6 14.98 80.43 REMARK 500 7 LYS A 20 77.59 62.39 REMARK 500 7 CYS A 35 177.64 70.78 REMARK 500 7 SER A 45 43.81 -82.96 REMARK 500 7 ASN A 60 140.83 -39.58 REMARK 500 7 PRO A 61 -25.53 -35.60 REMARK 500 7 LYS A 92 27.52 -149.03 REMARK 500 7 LEU A 95 76.63 60.58 REMARK 500 8 LYS A 2 -60.72 -105.87 REMARK 500 8 LYS A 3 -53.13 74.47 REMARK 500 8 GLU A 7 76.16 45.68 REMARK 500 8 LYS A 20 72.22 53.37 REMARK 500 8 CYS A 35 -179.32 67.91 REMARK 500 8 SER A 45 38.45 -89.89 REMARK 500 8 GLU A 62 -47.20 -177.52 REMARK 500 8 LYS A 90 95.63 64.68 REMARK 500 8 LEU A 95 86.23 77.25 REMARK 500 9 LYS A 2 81.96 55.86 REMARK 500 9 LYS A 6 76.68 -118.00 REMARK 500 9 LYS A 20 75.20 60.89 REMARK 500 9 THR A 22 -69.12 64.79 REMARK 500 9 ILE A 25 -48.09 -138.66 REMARK 500 9 GLN A 26 123.65 71.01 REMARK 500 9 CYS A 35 175.90 69.45 REMARK 500 9 SER A 45 45.17 -81.62 REMARK 500 9 PRO A 61 47.66 -63.39 REMARK 500 10 GLN A 5 -68.85 -125.25 REMARK 500 10 LYS A 8 72.09 59.27 REMARK 500 10 GLU A 9 -62.79 173.96 REMARK 500 10 LYS A 20 76.04 61.16 REMARK 500 10 ILE A 25 -76.82 -106.37 REMARK 500 10 GLN A 26 141.12 72.41 REMARK 500 10 CYS A 35 164.94 63.73 REMARK 500 10 PRO A 61 -52.64 -19.68 REMARK 500 10 LYS A 93 112.02 -160.40 REMARK 500 11 LYS A 3 72.77 -115.86 REMARK 500 11 GLN A 5 85.38 58.37 REMARK 500 11 GLU A 9 99.12 69.07 REMARK 500 11 LYS A 20 75.52 57.37 REMARK 500 11 CYS A 35 174.67 61.26 REMARK 500 11 LYS A 90 -70.35 -106.81 REMARK 500 11 LEU A 91 89.37 51.96 REMARK 500 11 ASP A 94 27.73 -172.13 REMARK 500 12 LYS A 3 25.51 -147.11 REMARK 500 12 GLU A 4 -147.14 -101.02 REMARK 500 12 GLN A 5 34.64 72.41 REMARK 500 12 LYS A 20 74.68 55.41 REMARK 500 12 GLN A 26 161.84 70.96 REMARK 500 12 CYS A 35 167.42 71.22 REMARK 500 12 PRO A 61 103.76 -59.14 REMARK 500 12 GLU A 62 -12.45 69.97 REMARK 500 12 LEU A 91 -76.27 70.37 REMARK 500 12 LYS A 92 -43.32 -171.19 REMARK 500 12 LYS A 93 91.57 62.44 REMARK 500 12 LEU A 95 -48.32 -168.17 REMARK 500 13 LYS A 20 79.53 59.97 REMARK 500 13 THR A 22 -47.55 60.41 REMARK 500 13 GLN A 26 -93.71 -110.93 REMARK 500 13 VAL A 27 149.40 170.92 REMARK 500 13 CYS A 35 178.46 68.73 REMARK 500 13 PRO A 61 136.75 -21.91 REMARK 500 13 GLU A 62 -35.60 87.52 REMARK 500 13 LYS A 90 -32.35 74.12 REMARK 500 13 LEU A 95 93.13 63.12 REMARK 500 14 GLN A 26 -84.31 -110.14 REMARK 500 14 VAL A 27 136.78 -177.62 REMARK 500 14 CYS A 35 -179.95 68.81 REMARK 500 14 SER A 45 41.95 -85.86 REMARK 500 14 PRO A 61 12.41 -64.23 REMARK 500 14 LEU A 89 -63.94 -93.48 REMARK 500 15 LYS A 2 49.45 -145.33 REMARK 500 15 GLN A 5 95.07 64.96 REMARK 500 15 GLU A 7 -91.12 -87.02 REMARK 500 15 LYS A 20 71.92 59.50 REMARK 500 15 CYS A 35 176.07 70.11 REMARK 500 15 SER A 45 45.89 -85.84 REMARK 500 15 LYS A 93 -82.83 -134.74 REMARK 500 16 GLU A 9 46.13 -72.85 REMARK 500 16 LYS A 20 76.21 51.67 REMARK 500 16 CYS A 35 175.11 71.15 REMARK 500 16 SER A 45 43.91 -88.00 REMARK 500 16 PRO A 61 -78.76 -56.60 REMARK 500 17 GLU A 4 -65.81 75.10 REMARK 500 17 GLN A 5 -59.77 62.78 REMARK 500 17 LYS A 20 75.24 56.54 REMARK 500 17 CYS A 35 164.70 72.74 REMARK 500 17 PRO A 61 94.77 -26.10 REMARK 500 17 GLU A 62 -51.61 173.58 REMARK 500 17 LEU A 89 -64.22 -104.36 REMARK 500 17 LEU A 95 -75.75 -90.53 REMARK 500 18 LYS A 6 -61.74 -102.12 REMARK 500 18 GLU A 7 72.01 40.33 REMARK 500 18 LYS A 8 107.71 -164.79 REMARK 500 18 LYS A 20 73.41 54.08 REMARK 500 18 ILE A 25 -70.59 -127.07 REMARK 500 18 GLN A 26 131.37 70.39 REMARK 500 18 CYS A 35 -174.11 62.50 REMARK 500 18 LYS A 90 131.05 66.94 REMARK 500 18 LEU A 91 109.80 69.37 REMARK 500 19 LYS A 3 -177.67 65.52 REMARK 500 19 LYS A 8 88.86 -160.57 REMARK 500 19 LYS A 20 76.42 58.48 REMARK 500 19 CYS A 35 -175.84 66.45 REMARK 500 19 PRO A 61 -80.73 -58.54 REMARK 500 19 LYS A 90 80.49 53.70 REMARK 500 19 LYS A 93 115.03 -174.75 REMARK 500 19 LEU A 95 102.80 -178.30 REMARK 500 20 LYS A 3 -50.02 -136.82 REMARK 500 20 GLU A 7 25.00 -144.47 REMARK 500 20 PRO A 61 83.88 -63.74 REMARK 500 20 LEU A 95 -74.95 -137.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 6 ARG A 56 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GTJ RELATED DB: PDB REMARK 900 REDUCED FORM OF THE DOMAIN
DBREF 2GTO A 1 94 UNP O15117 FYB_HUMAN 486 579
SEQADV 2GTO LEU A 95 UNP O15117 CLONING ARTIFACT SEQADV 2GTO GLU A 96 UNP O15117 CLONING ARTIFACT
SEQRES 1 A 96 GLU LYS LYS GLU GLN LYS GLU LYS GLU LYS LYS GLU GLN SEQRES 2 A 96 GLU ILE LYS LYS LYS PHE LYS LEU THR GLY PRO ILE GLN SEQRES 3 A 96 VAL ILE HIS LEU ALA LYS ALA CYS CYS ASP VAL LYS GLY SEQRES 4 A 96 GLY LYS ASN GLU LEU SER PHE LYS GLN GLY GLU GLN ILE SEQRES 5 A 96 GLU ILE ILE ARG ILE THR ASP ASN PRO GLU GLY LYS TRP SEQRES 6 A 96 LEU GLY ARG THR ALA ARG GLY SER TYR GLY TYR ILE LYS SEQRES 7 A 96 THR THR ALA VAL GLU ILE ASP TYR ASP SER LEU LYS LEU SEQRES 8 A 96 LYS LYS ASP LEU GLU
HELIX 1 1 LYS A 10 PHE A 19 1 10 HELIX 2 2 TYR A 86 LEU A 91 1 6
SHEET 1 A 4 HIS A 29 ALA A 33 0 SHEET 2 A 4 GLU A 50 ARG A 56 -1 O GLU A 50 N ALA A 33 SHEET 3 A 4 TRP A 65 THR A 69 -1 O ARG A 68 N GLU A 53 SHEET 4 A 4 TYR A 74 ILE A 77 -1 O GLY A 75 N GLY A 67
SSBOND 1 CYS A 34 CYS A 35 1555 1555 2.10
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000