10 20 30 40 50 60 70 80 2GTA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-APR-06 2GTA
TITLE CRYSTAL STRUCTURE OF THE PUTATIVE PYROPHOSPHATASE YPJD FROM TITLE 2 BACILLUS SUBTILIS. NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM TARGET SR428.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YPJD; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YPJD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21
KEYWDS PYROPHOSPHATASE, YPJD, NESG, STRUCTURAL GENOMICS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, UNKNOWN FUNCTION
EXPDTA X-RAY DIFFRACTION
AUTHOR S.M.VOROBIEV,W.ZHOU,J.SEETHARAMAN,D.WANG,L.C.MA,T.ACTON, AUTHOR 2 R.XIO,G.T.MONTELIONE,L.TONG,J.F.HUNT,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG)
REVDAT 2 24-FEB-09 2GTA 1 VERSN REVDAT 1 23-MAY-06 2GTA 0
JRNL AUTH S.M.VOROBIEV,W.ZHOU,J.SEETHARAMAN,D.WANG,L.C.MA, JRNL AUTH 2 T.ACTON,R.XIO,G.T.MONTELIONE,L.TONG,J.F.HUNT JRNL TITL CRYSTAL STRUCTURE OF THE PUTATIVE PYROPHOSPHATASE JRNL TITL 2 YPJD FROM BACILLUS SUBTILIS. JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 144717.020 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 80.1 REMARK 3 NUMBER OF REFLECTIONS : 23837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 978 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3580 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 149 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.032 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2938 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 99.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.40000 REMARK 3 B22 (A**2) : 46.26000 REMARK 3 B33 (A**2) : -38.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.54 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.56 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.73 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.29 REMARK 3 BSOL : 17.73 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2GTA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB037522.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.100 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 0.31800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHELXE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3350, 0.25 M SODIUM REMARK 280 TARTRATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.37350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.78400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.84700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.78400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.37350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.84700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TETRAMER ACCORDING TO AGGREGATION SCREEN
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -164.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 99 REMARK 465 ASP A 100 REMARK 465 LYS A 101 REMARK 465 ASP A 102 REMARK 465 ARG A 103 REMARK 465 TRP A 104 REMARK 465 THR A 105 REMARK 465 ARG A 106 REMARK 465 LYS A 107 REMARK 465 GLU A 108 REMARK 465 GLU A 109 REMARK 465 GLY A 110 REMARK 465 LYS A 111 REMARK 465 LEU A 112 REMARK 465 GLU A 113 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 THR B 57 REMARK 465 GLU B 58 REMARK 465 ASP B 59 REMARK 465 ASP B 60 REMARK 465 LYS B 101 REMARK 465 ASP B 102 REMARK 465 ARG B 103 REMARK 465 TRP B 104 REMARK 465 THR B 105 REMARK 465 ARG B 106 REMARK 465 LYS B 107 REMARK 465 GLU B 108 REMARK 465 GLU B 109 REMARK 465 GLY B 110 REMARK 465 LYS B 111 REMARK 465 LEU B 112 REMARK 465 GLU B 113 REMARK 465 HIS B 114 REMARK 465 HIS B 115 REMARK 465 HIS B 116 REMARK 465 HIS B 117 REMARK 465 HIS B 118 REMARK 465 HIS B 119 REMARK 465 MSE C 1 REMARK 465 GLY C 50 REMARK 465 GLU C 51 REMARK 465 LYS C 52 REMARK 465 PRO C 53 REMARK 465 LYS C 54 REMARK 465 LYS C 55 REMARK 465 ALA C 56 REMARK 465 THR C 57 REMARK 465 GLU C 58 REMARK 465 ASP C 59 REMARK 465 ASP C 60 REMARK 465 LYS C 61 REMARK 465 ASP C 100 REMARK 465 LYS C 101 REMARK 465 ASP C 102 REMARK 465 ARG C 103 REMARK 465 TRP C 104 REMARK 465 THR C 105 REMARK 465 ARG C 106 REMARK 465 LYS C 107 REMARK 465 GLU C 108 REMARK 465 GLU C 109 REMARK 465 GLY C 110 REMARK 465 LYS C 111 REMARK 465 LEU C 112 REMARK 465 GLU C 113 REMARK 465 HIS C 114 REMARK 465 HIS C 115 REMARK 465 HIS C 116 REMARK 465 HIS C 117 REMARK 465 HIS C 118 REMARK 465 HIS C 119 REMARK 465 MSE D 1 REMARK 465 LYS D 52 REMARK 465 PRO D 53 REMARK 465 LYS D 54 REMARK 465 LYS D 55 REMARK 465 ALA D 56 REMARK 465 THR D 57 REMARK 465 GLU D 58 REMARK 465 ASP D 59 REMARK 465 ASP D 60 REMARK 465 ARG D 99 REMARK 465 ASP D 100 REMARK 465 LYS D 101 REMARK 465 ASP D 102 REMARK 465 ARG D 103 REMARK 465 TRP D 104 REMARK 465 THR D 105 REMARK 465 HIS D 115 REMARK 465 HIS D 116 REMARK 465 HIS D 117 REMARK 465 HIS D 118 REMARK 465 HIS D 119
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 THR A 57 OG1 CG2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 THR A 98 OG1 CG2 REMARK 470 SER B 2 OG REMARK 470 THR B 5 OG1 CG2 REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 SER B 62 OG REMARK 470 GLU B 65 CG CD OE1 OE2 REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 THR B 98 OG1 CG2 REMARK 470 SER C 2 OG REMARK 470 THR C 5 OG1 CG2 REMARK 470 ASP C 8 CG OD1 OD2 REMARK 470 LYS C 21 CG CD CE NZ REMARK 470 SER C 62 OG REMARK 470 GLU C 64 CG CD OE1 OE2 REMARK 470 GLU C 65 CG CD OE1 OE2 REMARK 470 LYS C 95 CG CD CE NZ REMARK 470 THR C 98 OG1 CG2 REMARK 470 ARG C 99 CG CD NE CZ NH1 NH2 REMARK 470 SER D 2 OG REMARK 470 THR D 5 OG1 CG2 REMARK 470 ASP D 8 CG OD1 OD2 REMARK 470 GLU D 51 CG CD OE1 OE2 REMARK 470 LYS D 61 CG CD CE NZ REMARK 470 ARG D 106 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 107 CG CD CE NZ REMARK 470 HIS D 114 CG ND1 CD2 CE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 60 -145.90 -128.64 REMARK 500 PHE A 96 -96.10 -82.49 REMARK 500 LYS B 55 -162.57 -103.37 REMARK 500 TYR D 49 21.05 -143.12 REMARK 500 GLU D 113 -69.28 -122.45 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 37 O REMARK 620 2 GLU A 37 OE1 93.7 REMARK 620 3 HOH A 463 O 156.5 66.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 37 OE1 REMARK 620 2 GLU B 40 OE1 60.3 REMARK 620 3 GLU B 66 OE2 121.3 69.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 37 OE1 REMARK 620 2 GLU C 66 OE1 112.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 37 OE1 REMARK 620 2 GLU D 40 OE1 75.0 REMARK 620 3 ASP D 69 OD2 78.5 114.4 REMARK 620 N 1 2
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 301 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 302 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 303 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 304
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR428 RELATED DB: TARGETDB
DBREF 2GTA A 1 111 UNP P42979 YPJD_BACSU 1 111 DBREF 2GTA B 1 111 UNP P42979 YPJD_BACSU 1 111 DBREF 2GTA C 1 111 UNP P42979 YPJD_BACSU 1 111 DBREF 2GTA D 1 111 UNP P42979 YPJD_BACSU 1 111
SEQADV 2GTA MSE A 1 UNP P42979 MET 1 MODIFIED RESIDUE SEQADV 2GTA MSE A 6 UNP P42979 MET 6 MODIFIED RESIDUE SEQADV 2GTA MSE A 30 UNP P42979 MET 30 MODIFIED RESIDUE SEQADV 2GTA MSE A 31 UNP P42979 MET 31 MODIFIED RESIDUE SEQADV 2GTA MSE A 63 UNP P42979 MET 63 MODIFIED RESIDUE SEQADV 2GTA MSE A 93 UNP P42979 MET 93 MODIFIED RESIDUE SEQADV 2GTA LEU A 112 UNP P42979 EXPRESSION TAG SEQADV 2GTA GLU A 113 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS A 114 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS A 115 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS A 116 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS A 117 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS A 118 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS A 119 UNP P42979 EXPRESSION TAG SEQADV 2GTA MSE B 1 UNP P42979 MET 1 MODIFIED RESIDUE SEQADV 2GTA MSE B 6 UNP P42979 MET 6 MODIFIED RESIDUE SEQADV 2GTA MSE B 30 UNP P42979 MET 30 MODIFIED RESIDUE SEQADV 2GTA MSE B 31 UNP P42979 MET 31 MODIFIED RESIDUE SEQADV 2GTA MSE B 63 UNP P42979 MET 63 MODIFIED RESIDUE SEQADV 2GTA MSE B 93 UNP P42979 MET 93 MODIFIED RESIDUE SEQADV 2GTA LEU B 112 UNP P42979 EXPRESSION TAG SEQADV 2GTA GLU B 113 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS B 114 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS B 115 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS B 116 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS B 117 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS B 118 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS B 119 UNP P42979 EXPRESSION TAG SEQADV 2GTA MSE C 1 UNP P42979 MET 1 MODIFIED RESIDUE SEQADV 2GTA MSE C 6 UNP P42979 MET 6 MODIFIED RESIDUE SEQADV 2GTA MSE C 30 UNP P42979 MET 30 MODIFIED RESIDUE SEQADV 2GTA MSE C 31 UNP P42979 MET 31 MODIFIED RESIDUE SEQADV 2GTA MSE C 63 UNP P42979 MET 63 MODIFIED RESIDUE SEQADV 2GTA MSE C 93 UNP P42979 MET 93 MODIFIED RESIDUE SEQADV 2GTA LEU C 112 UNP P42979 EXPRESSION TAG SEQADV 2GTA GLU C 113 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS C 114 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS C 115 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS C 116 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS C 117 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS C 118 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS C 119 UNP P42979 EXPRESSION TAG SEQADV 2GTA MSE D 1 UNP P42979 MET 1 MODIFIED RESIDUE SEQADV 2GTA MSE D 6 UNP P42979 MET 6 MODIFIED RESIDUE SEQADV 2GTA MSE D 30 UNP P42979 MET 30 MODIFIED RESIDUE SEQADV 2GTA MSE D 31 UNP P42979 MET 31 MODIFIED RESIDUE SEQADV 2GTA MSE D 63 UNP P42979 MET 63 MODIFIED RESIDUE SEQADV 2GTA MSE D 93 UNP P42979 MET 93 MODIFIED RESIDUE SEQADV 2GTA LEU D 112 UNP P42979 EXPRESSION TAG SEQADV 2GTA GLU D 113 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS D 114 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS D 115 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS D 116 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS D 117 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS D 118 UNP P42979 EXPRESSION TAG SEQADV 2GTA HIS D 119 UNP P42979 EXPRESSION TAG
SEQRES 1 A 119 MSE SER ASP LYS THR MSE LYS ASP ILE GLN ALA GLU VAL SEQRES 2 A 119 ASP ARG TYR ILE GLY GLN PHE LYS GLU GLY TYR PHE SER SEQRES 3 A 119 PRO LEU ALA MSE MSE ALA ARG LEU THR GLU GLU LEU GLY SEQRES 4 A 119 GLU LEU ALA ARG GLU VAL ASN HIS ARG TYR GLY GLU LYS SEQRES 5 A 119 PRO LYS LYS ALA THR GLU ASP ASP LYS SER MSE GLU GLU SEQRES 6 A 119 GLU ILE GLY ASP VAL LEU PHE VAL LEU VAL CYS LEU ALA SEQRES 7 A 119 ASN SER LEU ASP ILE SER LEU GLU GLU ALA HIS ASP ARG SEQRES 8 A 119 VAL MSE HIS LYS PHE ASN THR ARG ASP LYS ASP ARG TRP SEQRES 9 A 119 THR ARG LYS GLU GLU GLY LYS LEU GLU HIS HIS HIS HIS SEQRES 10 A 119 HIS HIS SEQRES 1 B 119 MSE SER ASP LYS THR MSE LYS ASP ILE GLN ALA GLU VAL SEQRES 2 B 119 ASP ARG TYR ILE GLY GLN PHE LYS GLU GLY TYR PHE SER SEQRES 3 B 119 PRO LEU ALA MSE MSE ALA ARG LEU THR GLU GLU LEU GLY SEQRES 4 B 119 GLU LEU ALA ARG GLU VAL ASN HIS ARG TYR GLY GLU LYS SEQRES 5 B 119 PRO LYS LYS ALA THR GLU ASP ASP LYS SER MSE GLU GLU SEQRES 6 B 119 GLU ILE GLY ASP VAL LEU PHE VAL LEU VAL CYS LEU ALA SEQRES 7 B 119 ASN SER LEU ASP ILE SER LEU GLU GLU ALA HIS ASP ARG SEQRES 8 B 119 VAL MSE HIS LYS PHE ASN THR ARG ASP LYS ASP ARG TRP SEQRES 9 B 119 THR ARG LYS GLU GLU GLY LYS LEU GLU HIS HIS HIS HIS SEQRES 10 B 119 HIS HIS SEQRES 1 C 119 MSE SER ASP LYS THR MSE LYS ASP ILE GLN ALA GLU VAL SEQRES 2 C 119 ASP ARG TYR ILE GLY GLN PHE LYS GLU GLY TYR PHE SER SEQRES 3 C 119 PRO LEU ALA MSE MSE ALA ARG LEU THR GLU GLU LEU GLY SEQRES 4 C 119 GLU LEU ALA ARG GLU VAL ASN HIS ARG TYR GLY GLU LYS SEQRES 5 C 119 PRO LYS LYS ALA THR GLU ASP ASP LYS SER MSE GLU GLU SEQRES 6 C 119 GLU ILE GLY ASP VAL LEU PHE VAL LEU VAL CYS LEU ALA SEQRES 7 C 119 ASN SER LEU ASP ILE SER LEU GLU GLU ALA HIS ASP ARG SEQRES 8 C 119 VAL MSE HIS LYS PHE ASN THR ARG ASP LYS ASP ARG TRP SEQRES 9 C 119 THR ARG LYS GLU GLU GLY LYS LEU GLU HIS HIS HIS HIS SEQRES 10 C 119 HIS HIS SEQRES 1 D 119 MSE SER ASP LYS THR MSE LYS ASP ILE GLN ALA GLU VAL SEQRES 2 D 119 ASP ARG TYR ILE GLY GLN PHE LYS GLU GLY TYR PHE SER SEQRES 3 D 119 PRO LEU ALA MSE MSE ALA ARG LEU THR GLU GLU LEU GLY SEQRES 4 D 119 GLU LEU ALA ARG GLU VAL ASN HIS ARG TYR GLY GLU LYS SEQRES 5 D 119 PRO LYS LYS ALA THR GLU ASP ASP LYS SER MSE GLU GLU SEQRES 6 D 119 GLU ILE GLY ASP VAL LEU PHE VAL LEU VAL CYS LEU ALA SEQRES 7 D 119 ASN SER LEU ASP ILE SER LEU GLU GLU ALA HIS ASP ARG SEQRES 8 D 119 VAL MSE HIS LYS PHE ASN THR ARG ASP LYS ASP ARG TRP SEQRES 9 D 119 THR ARG LYS GLU GLU GLY LYS LEU GLU HIS HIS HIS HIS SEQRES 10 D 119 HIS HIS
MODRES 2GTA MSE A 1 MET SELENOMETHIONINE MODRES 2GTA MSE A 6 MET SELENOMETHIONINE MODRES 2GTA MSE A 30 MET SELENOMETHIONINE MODRES 2GTA MSE A 31 MET SELENOMETHIONINE MODRES 2GTA MSE A 63 MET SELENOMETHIONINE MODRES 2GTA MSE A 93 MET SELENOMETHIONINE MODRES 2GTA MSE B 1 MET SELENOMETHIONINE MODRES 2GTA MSE B 6 MET SELENOMETHIONINE MODRES 2GTA MSE B 30 MET SELENOMETHIONINE MODRES 2GTA MSE B 31 MET SELENOMETHIONINE MODRES 2GTA MSE B 63 MET SELENOMETHIONINE MODRES 2GTA MSE B 93 MET SELENOMETHIONINE MODRES 2GTA MSE C 6 MET SELENOMETHIONINE MODRES 2GTA MSE C 30 MET SELENOMETHIONINE MODRES 2GTA MSE C 31 MET SELENOMETHIONINE MODRES 2GTA MSE C 63 MET SELENOMETHIONINE MODRES 2GTA MSE C 93 MET SELENOMETHIONINE MODRES 2GTA MSE D 6 MET SELENOMETHIONINE MODRES 2GTA MSE D 30 MET SELENOMETHIONINE MODRES 2GTA MSE D 31 MET SELENOMETHIONINE MODRES 2GTA MSE D 63 MET SELENOMETHIONINE MODRES 2GTA MSE D 93 MET SELENOMETHIONINE
HET MSE A 1 8 HET MSE A 6 8 HET MSE A 30 8 HET MSE A 31 8 HET MSE A 63 8 HET MSE A 93 8 HET MSE B 1 8 HET MSE B 6 8 HET MSE B 30 8 HET MSE B 31 8 HET MSE B 63 8 HET MSE B 93 8 HET MSE C 6 8 HET MSE C 30 8 HET MSE C 31 8 HET MSE C 63 8 HET MSE C 93 8 HET MSE D 6 8 HET MSE D 30 8 HET MSE D 31 8 HET MSE D 63 8 HET MSE D 93 8 HET NA D 301 1 HET NA B 302 1 HET NA C 303 1 HET NA A 304 1
HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION
FORMUL 1 MSE 22(C5 H11 N O2 SE) FORMUL 5 NA 4(NA 1+) FORMUL 9 HOH *26(H2 O)
HELIX 1 1 THR A 5 GLY A 18 1 14 HELIX 2 2 SER A 26 TYR A 49 1 24 HELIX 3 3 LYS A 61 SER A 80 1 20 HELIX 4 4 SER A 84 PHE A 96 1 13 HELIX 5 5 MSE B 6 LYS B 21 1 16 HELIX 6 6 SER B 26 TYR B 49 1 24 HELIX 7 7 SER B 62 LEU B 81 1 20 HELIX 8 8 SER B 84 THR B 98 1 15 HELIX 9 9 THR C 5 GLN C 19 1 15 HELIX 10 10 SER C 26 TYR C 49 1 24 HELIX 11 11 SER C 62 LEU C 81 1 20 HELIX 12 12 SER C 84 THR C 98 1 15 HELIX 13 13 THR D 5 GLN D 19 1 15 HELIX 14 14 SER D 26 GLY D 50 1 25 HELIX 15 15 LYS D 61 LEU D 81 1 21 HELIX 16 16 SER D 84 THR D 98 1 15 HELIX 17 17 GLU D 109 GLU D 113 5 5
LINK C MSE A 1 N SER A 2 1555 1555 1.34 LINK C THR A 5 N MSE A 6 1555 1555 1.33 LINK C MSE A 6 N LYS A 7 1555 1555 1.34 LINK C ALA A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N MSE A 31 1555 1555 1.33 LINK C MSE A 31 N ALA A 32 1555 1555 1.33 LINK C SER A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N GLU A 64 1555 1555 1.33 LINK C VAL A 92 N MSE A 93 1555 1555 1.32 LINK C MSE A 93 N HIS A 94 1555 1555 1.33 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C THR B 5 N MSE B 6 1555 1555 1.33 LINK C MSE B 6 N LYS B 7 1555 1555 1.34 LINK C ALA B 29 N MSE B 30 1555 1555 1.33 LINK C MSE B 30 N MSE B 31 1555 1555 1.33 LINK C MSE B 31 N ALA B 32 1555 1555 1.33 LINK C SER B 62 N MSE B 63 1555 1555 1.33 LINK C MSE B 63 N GLU B 64 1555 1555 1.33 LINK C VAL B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N HIS B 94 1555 1555 1.33 LINK C THR C 5 N MSE C 6 1555 1555 1.33 LINK C MSE C 6 N LYS C 7 1555 1555 1.33 LINK C ALA C 29 N MSE C 30 1555 1555 1.33 LINK C MSE C 30 N MSE C 31 1555 1555 1.33 LINK C MSE C 31 N ALA C 32 1555 1555 1.33 LINK C SER C 62 N MSE C 63 1555 1555 1.33 LINK C MSE C 63 N GLU C 64 1555 1555 1.33 LINK C VAL C 92 N MSE C 93 1555 1555 1.33 LINK C MSE C 93 N HIS C 94 1555 1555 1.33 LINK C THR D 5 N MSE D 6 1555 1555 1.33 LINK C MSE D 6 N LYS D 7 1555 1555 1.33 LINK C ALA D 29 N MSE D 30 1555 1555 1.33 LINK C MSE D 30 N MSE D 31 1555 1555 1.33 LINK C MSE D 31 N ALA D 32 1555 1555 1.32 LINK C SER D 62 N MSE D 63 1555 1555 1.33 LINK C MSE D 63 N GLU D 64 1555 1555 1.33 LINK C VAL D 92 N MSE D 93 1555 1555 1.32 LINK C MSE D 93 N HIS D 94 1555 1555 1.33 LINK O GLU A 37 NA NA A 304 1555 1555 2.92 LINK OE1 GLU A 37 NA NA A 304 1555 1555 2.79 LINK OE1 GLU B 37 NA NA B 302 1555 1555 2.72 LINK OE1 GLU B 40 NA NA B 302 1555 1555 2.79 LINK OE2 GLU B 66 NA NA B 302 1555 1555 3.00 LINK OE1 GLU C 37 NA NA C 303 1555 1555 2.91 LINK OE1 GLU C 66 NA NA C 303 1555 1555 2.99 LINK OE1 GLU D 37 NA NA D 301 1555 1555 2.78 LINK OE1 GLU D 40 NA NA D 301 1555 1555 2.74 LINK OD2 ASP D 69 NA NA D 301 1555 1555 2.97 LINK NA NA A 304 O HOH A 463 1555 1555 2.81
SITE 1 AC1 4 GLU D 37 GLU D 40 GLU D 66 ASP D 69 SITE 1 AC2 4 GLU B 37 GLU B 40 GLU B 66 ASP B 69 SITE 1 AC3 4 GLU C 37 GLU C 40 GLU C 66 ASP C 69 SITE 1 AC4 5 GLU A 37 GLU A 40 GLU A 66 ASP A 69 SITE 2 AC4 5 HOH A 463
CRYST1 72.747 79.694 119.568 90.00 90.00 90.00 P 21 21 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013746 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012548 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008363 0.00000