10 20 30 40 50 60 70 80 2GSB - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 26-APR-06 2GSB
TITLE SOLUTION STRUCTURE OF THE SECOND SH2 DOMAIN OF HUMAN RAS TITLE 2 GTPASE-ACTIVATING PROTEIN 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS GTPASE-ACTIVATING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN; COMPND 5 SYNONYM: GTPASE-ACTIVATING PROTEIN, GAP, RAS P21 PROTEIN COMPND 6 ACTIVATOR, P120GAP, RASGAP; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RASA1, RASA; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050711-17; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS GTPASE-ACTIVATING PROTEIN, GAP, RAS P21 PROTEIN ACTIVATOR, KEYWDS 2 P120GAP, RASGAP, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 3 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 5 SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.KUROSAKI,T.SUETAKE,M.YOSHIDA,F.HAYASHI,S.YOKOYMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2GSB 1 VERSN REVDAT 1 01-MAY-07 2GSB 0
JRNL AUTH C.KUROSAKI,T.SUETAKE,M.YOSHIDA,F.HAYASHI,S.YOKOYMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND SH2 DOMAIN OF JRNL TITL 2 HUMAN RAS GTPASE-ACTIVATING PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2GSB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB037492.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.27MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL (PH REMARK 210 7.0); 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3, 10% D2O; 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.934, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 148.95 -170.88 REMARK 500 1 THR A 34 -69.74 -105.88 REMARK 500 1 VAL A 38 140.12 -38.49 REMARK 500 1 PRO A 50 91.35 -69.81 REMARK 500 1 PRO A 72 1.44 -69.79 REMARK 500 1 SER A 114 120.03 -34.51 REMARK 500 1 SER A 117 100.89 -50.37 REMARK 500 2 SER A 5 133.55 -38.25 REMARK 500 2 ARG A 8 99.33 -52.61 REMARK 500 2 ILE A 23 177.31 -57.72 REMARK 500 2 PRO A 50 89.57 -69.81 REMARK 500 2 PRO A 72 2.10 -69.74 REMARK 500 2 ASN A 73 41.28 -105.02 REMARK 500 2 MET A 78 -64.65 -95.77 REMARK 500 2 ARG A 94 -35.77 -39.67 REMARK 500 2 GLN A 111 64.55 -112.74 REMARK 500 2 PRO A 116 -165.92 -69.79 REMARK 500 3 SER A 2 42.10 38.27 REMARK 500 3 SER A 5 163.30 -49.83 REMARK 500 3 SER A 6 42.05 -107.93 REMARK 500 3 ALA A 28 -35.62 -34.94 REMARK 500 3 THR A 34 -72.69 -99.22 REMARK 500 3 VAL A 38 142.49 -34.65 REMARK 500 3 SER A 46 102.52 -57.14 REMARK 500 3 PRO A 50 92.13 -69.80 REMARK 500 3 ASP A 112 109.34 -44.03 REMARK 500 4 SER A 5 -51.03 -131.31 REMARK 500 4 ILE A 23 -178.96 -62.18 REMARK 500 4 THR A 34 -74.30 -113.55 REMARK 500 4 ASP A 47 -61.76 -94.46 REMARK 500 4 PRO A 50 4.99 -69.78 REMARK 500 4 MET A 78 68.51 -115.30 REMARK 500 4 GLU A 100 39.95 -81.40 REMARK 500 4 PRO A 107 -177.28 -69.70 REMARK 500 4 ASP A 112 129.23 -37.14 REMARK 500 4 GLN A 113 99.30 -50.73 REMARK 500 4 SER A 118 100.57 -58.40 REMARK 500 5 ARG A 8 120.43 -37.11 REMARK 500 5 ILE A 23 -175.44 -55.24 REMARK 500 5 THR A 34 -74.68 -118.74 REMARK 500 5 LEU A 42 144.50 -173.58 REMARK 500 5 SER A 46 102.70 -44.88 REMARK 500 5 GLU A 61 -75.07 -80.12 REMARK 500 5 PRO A 72 0.03 -69.74 REMARK 500 5 GLN A 97 100.06 -48.48 REMARK 500 5 LYS A 105 -68.38 -103.96 REMARK 500 6 SER A 5 160.29 -40.14 REMARK 500 6 THR A 34 -72.75 -128.45 REMARK 500 6 SER A 46 -175.92 -57.70 REMARK 500 6 ASP A 47 -75.20 -123.10 REMARK 500 6 THR A 49 151.87 -34.47 REMARK 500 6 PRO A 50 79.69 -69.76 REMARK 500 6 PRO A 72 2.09 -69.74 REMARK 500 6 MET A 78 -60.01 -108.72 REMARK 500 6 ILE A 89 -36.82 -37.06 REMARK 500 6 GLU A 100 38.19 -82.65 REMARK 500 6 GLN A 113 49.55 -78.15 REMARK 500 7 ILE A 23 -178.95 -68.68 REMARK 500 7 THR A 34 -74.58 -112.11 REMARK 500 7 ASN A 48 48.72 34.01 REMARK 500 7 PRO A 50 7.61 -69.70 REMARK 500 7 ASP A 52 162.31 -45.45 REMARK 500 7 MET A 78 -56.62 -120.86 REMARK 500 7 GLN A 97 94.07 -52.93 REMARK 500 7 SER A 117 103.90 -49.25 REMARK 500 8 THR A 34 -74.48 -119.30 REMARK 500 8 SER A 46 173.61 -58.21 REMARK 500 8 GLU A 61 -74.38 -72.03 REMARK 500 8 ASN A 73 37.40 -89.09 REMARK 500 8 ASP A 91 -32.05 -37.04 REMARK 500 8 GLU A 100 39.03 -82.17 REMARK 500 8 LYS A 105 -73.58 -81.14 REMARK 500 8 ASP A 112 160.34 -48.53 REMARK 500 8 SER A 118 169.12 -47.63 REMARK 500 9 ILE A 23 -176.00 -51.25 REMARK 500 9 THR A 34 -74.02 -112.65 REMARK 500 9 ASN A 48 -74.99 -35.58 REMARK 500 9 PRO A 50 93.27 -69.74 REMARK 500 9 GLU A 100 36.30 -83.40 REMARK 500 9 LYS A 105 -72.63 -73.15 REMARK 500 10 SER A 5 118.56 -170.34 REMARK 500 10 ILE A 23 -175.04 -68.25 REMARK 500 10 THR A 34 -75.04 -111.03 REMARK 500 10 ASN A 48 27.68 45.42 REMARK 500 10 ILE A 89 -36.23 -37.05 REMARK 500 10 GLU A 100 39.10 -81.99 REMARK 500 10 LYS A 105 -71.68 -74.19 REMARK 500 10 ASP A 112 133.30 -39.00 REMARK 500 10 GLN A 113 -67.41 -107.00 REMARK 500 11 SER A 3 86.62 -66.14 REMARK 500 11 ARG A 8 47.51 33.81 REMARK 500 11 GLU A 14 42.95 -81.87 REMARK 500 11 LEU A 32 -18.55 -49.41 REMARK 500 11 THR A 34 -74.01 -103.70 REMARK 500 11 SER A 46 170.50 -58.64 REMARK 500 11 ASN A 60 -34.29 -33.79 REMARK 500 11 GLU A 61 -74.63 -82.21 REMARK 500 11 ASN A 73 50.09 -105.43 REMARK 500 11 ASN A 74 51.52 37.09 REMARK 500 11 ILE A 89 -31.05 -37.07 REMARK 500 11 GLU A 100 -31.82 -35.26 REMARK 500 11 GLN A 113 46.26 35.57 REMARK 500 11 SER A 114 -36.75 -39.33 REMARK 500 11 SER A 117 101.75 -43.68 REMARK 500 12 ARG A 8 107.22 -34.79 REMARK 500 12 ILE A 23 -175.11 -66.27 REMARK 500 12 THR A 34 -75.00 -115.44 REMARK 500 12 GLU A 61 -72.14 -67.14 REMARK 500 12 ILE A 89 -32.42 -34.67 REMARK 500 12 GLN A 97 108.38 -44.20 REMARK 500 12 GLU A 100 40.47 -80.72 REMARK 500 12 LYS A 105 -74.16 -68.79 REMARK 500 12 PRO A 107 -179.95 -69.69 REMARK 500 12 SER A 114 79.59 -119.39 REMARK 500 12 SER A 117 101.28 -39.90 REMARK 500 12 SER A 118 108.03 -40.75 REMARK 500 13 LYS A 16 135.61 -36.68 REMARK 500 13 ILE A 23 -176.64 -61.80 REMARK 500 13 THR A 34 -75.06 -106.04 REMARK 500 13 LEU A 42 142.75 -172.51 REMARK 500 13 SER A 46 137.14 -37.66 REMARK 500 13 ASN A 48 -72.22 -71.74 REMARK 500 13 PRO A 50 4.72 -69.81 REMARK 500 13 ARG A 65 114.39 -166.29 REMARK 500 13 PRO A 72 0.77 -69.67 REMARK 500 13 ASN A 74 48.62 38.96 REMARK 500 13 GLU A 100 -36.69 -35.08 REMARK 500 13 ASP A 112 39.04 -89.87 REMARK 500 14 ILE A 23 176.37 -58.95 REMARK 500 14 ASN A 62 -179.85 -172.37 REMARK 500 14 GLN A 97 117.78 -34.65 REMARK 500 14 LYS A 105 -71.16 -77.65 REMARK 500 14 MET A 110 176.64 -52.51 REMARK 500 14 GLN A 111 73.30 -112.13 REMARK 500 14 ASP A 112 96.58 -69.91 REMARK 500 14 SER A 117 130.97 -36.67 REMARK 500 15 GLU A 14 33.38 -88.38 REMARK 500 15 SER A 46 172.85 -49.42 REMARK 500 15 PRO A 50 88.80 -69.79 REMARK 500 15 GLU A 61 -75.03 -100.00 REMARK 500 15 ASN A 73 43.95 -102.00 REMARK 500 15 ASN A 74 40.99 37.75 REMARK 500 15 GLU A 100 -32.50 -37.26 REMARK 500 15 SER A 114 71.32 -106.32 REMARK 500 16 SER A 5 48.99 34.34 REMARK 500 16 LYS A 16 155.52 -48.63 REMARK 500 16 ILE A 23 -175.99 -66.51 REMARK 500 16 THR A 34 -73.89 -112.12 REMARK 500 16 GLU A 61 -72.88 -76.80 REMARK 500 16 ASN A 73 38.80 -96.36 REMARK 500 16 GLU A 100 -32.82 -36.42 REMARK 500 16 LYS A 105 -70.92 -77.68 REMARK 500 16 GLN A 111 69.84 -114.89 REMARK 500 16 SER A 117 96.41 -39.69 REMARK 500 17 LYS A 16 139.72 -39.83 REMARK 500 17 THR A 34 -70.96 -104.11 REMARK 500 17 ASN A 73 42.40 -87.46 REMARK 500 17 ASN A 74 53.53 38.07 REMARK 500 17 MET A 78 72.77 -105.19 REMARK 500 17 ILE A 89 -30.16 -39.79 REMARK 500 17 GLN A 97 104.75 -45.81 REMARK 500 17 MET A 110 -177.63 -50.46 REMARK 500 17 ASP A 112 118.51 -170.59 REMARK 500 17 SER A 114 109.57 -39.87 REMARK 500 18 ILE A 23 -175.20 -64.59 REMARK 500 18 THR A 34 -75.06 -104.36 REMARK 500 18 ASN A 48 44.49 36.19 REMARK 500 18 PRO A 50 86.09 -69.74 REMARK 500 18 ASN A 62 148.90 -174.19 REMARK 500 18 GLN A 97 108.91 -38.74 REMARK 500 18 GLU A 100 39.10 -81.21 REMARK 500 18 LYS A 105 -72.20 -75.53 REMARK 500 19 SER A 5 -50.42 -127.16 REMARK 500 19 GLU A 9 141.61 -38.60 REMARK 500 19 THR A 34 -74.31 -113.02 REMARK 500 19 ASP A 47 103.06 -57.90 REMARK 500 19 ASN A 73 46.67 -87.79 REMARK 500 19 ASN A 74 54.77 34.13 REMARK 500 19 ASP A 112 109.65 -36.78 REMARK 500 20 ILE A 23 -177.63 -58.80 REMARK 500 20 THR A 34 -75.03 -110.82 REMARK 500 20 GLU A 61 -72.93 -80.10 REMARK 500 20 ASN A 73 44.64 -102.48 REMARK 500 20 ASN A 74 49.97 37.04 REMARK 500 20 GLU A 100 -39.63 -36.74 REMARK 500 20 ASP A 112 43.88 38.37 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2GSB A 8 113 UNP P20936 RASA1_HUMAN 341 446
SEQADV 2GSB GLY A 1 UNP P20936 CLONING ARTIFACT SEQADV 2GSB SER A 2 UNP P20936 CLONING ARTIFACT SEQADV 2GSB SER A 3 UNP P20936 CLONING ARTIFACT SEQADV 2GSB GLY A 4 UNP P20936 CLONING ARTIFACT SEQADV 2GSB SER A 5 UNP P20936 CLONING ARTIFACT SEQADV 2GSB SER A 6 UNP P20936 CLONING ARTIFACT SEQADV 2GSB GLY A 7 UNP P20936 CLONING ARTIFACT SEQADV 2GSB SER A 114 UNP P20936 CLONING ARTIFACT SEQADV 2GSB GLY A 115 UNP P20936 CLONING ARTIFACT SEQADV 2GSB PRO A 116 UNP P20936 CLONING ARTIFACT SEQADV 2GSB SER A 117 UNP P20936 CLONING ARTIFACT SEQADV 2GSB SER A 118 UNP P20936 CLONING ARTIFACT SEQADV 2GSB GLY A 119 UNP P20936 CLONING ARTIFACT
SEQRES 1 A 119 GLY SER SER GLY SER SER GLY ARG GLU GLU ASP PRO HIS SEQRES 2 A 119 GLU GLY LYS ILE TRP PHE HIS GLY LYS ILE SER LYS GLN SEQRES 3 A 119 GLU ALA TYR ASN LEU LEU MET THR VAL GLY GLN VAL CYS SEQRES 4 A 119 SER PHE LEU VAL ARG PRO SER ASP ASN THR PRO GLY ASP SEQRES 5 A 119 TYR SER LEU TYR PHE ARG THR ASN GLU ASN ILE GLN ARG SEQRES 6 A 119 PHE LYS ILE CYS PRO THR PRO ASN ASN GLN PHE MET MET SEQRES 7 A 119 GLY GLY ARG TYR TYR ASN SER ILE GLY ASP ILE ILE ASP SEQRES 8 A 119 HIS TYR ARG LYS GLU GLN ILE VAL GLU GLY TYR TYR LEU SEQRES 9 A 119 LYS GLU PRO VAL PRO MET GLN ASP GLN SER GLY PRO SER SEQRES 10 A 119 SER GLY
HELIX 1 1 PRO A 12 LYS A 16 5 5 HELIX 2 2 SER A 24 THR A 34 1 11 HELIX 3 3 SER A 85 ARG A 94 1 10
SHEET 1 A 2 SER A 40 PRO A 45 0 SHEET 2 A 2 TYR A 53 ARG A 58 -1 O TYR A 56 N LEU A 42 SHEET 1 B 2 ILE A 68 THR A 71 0 SHEET 2 B 2 GLN A 75 MET A 78 -1 O GLN A 75 N THR A 71
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000