10 20 30 40 50 60 70 80 2GS7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric Unit
HEADER TRANSFERASE 25-APR-06 2GS7
TITLE CRYSTAL STRUCTURE OF THE INACTIVE EGFR KINASE DOMAIN IN TITLE 2 COMPLEX WITH AMP-PNP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 696-1022; COMPND 5 SYNONYM: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULORVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC-HT
KEYWDS EGFR, KINASE, INACTIVE, AMP-PNP, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR X.ZHANG,J.GUREASKO,K.SHEN,P.A.COLE,J.KURIYAN
REVDAT 3 24-FEB-09 2GS7 1 VERSN REVDAT 2 27-JUN-06 2GS7 1 JRNL REVDAT 1 20-JUN-06 2GS7 0
JRNL AUTH X.ZHANG,J.GUREASKO,K.SHEN,P.A.COLE,J.KURIYAN JRNL TITL AN ALLOSTERIC MECHANISM FOR ACTIVATION OF THE JRNL TITL 2 KINASE DOMAIN OF EPIDERMAL GROWTH FACTOR RECEPTOR JRNL REF CELL(CAMBRIDGE,MASS.) V. 125 1137 2006 JRNL REFN ISSN 0092-8674 JRNL PMID 16777603 JRNL DOI 10.1016/J.CELL.2006.05.013
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 23414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1673 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4505 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.45400 REMARK 3 B22 (A**2) : 18.57100 REMARK 3 B33 (A**2) : -6.11700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -25.29100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.37 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 47.82 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ANP_PAR.TXT REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2GS7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB037489.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BLU-ICE REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24965 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1XKK REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M NAI, 100 MM BIS- REMARK 280 TRIS PROPANE, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.62650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAINS. THERE IS NO PHYSIOLOGICALLY REMARK 300 RELEVANT BIOLOGICAL ASSEMBLY FOR THIS STRUCTURE
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 669 REMARK 465 ALA A 670 REMARK 465 MET A 671 REMARK 465 GLY A 672 REMARK 465 GLU A 673 REMARK 465 ALA A 674 REMARK 465 PRO A 675 REMARK 465 ASN A 676 REMARK 465 GLN A 677 REMARK 465 ALA A 678 REMARK 465 ALA A 847 REMARK 465 GLU A 848 REMARK 465 GLY A 849 REMARK 465 GLY A 850 REMARK 465 ASP A 960 REMARK 465 GLU A 961 REMARK 465 ARG A 962 REMARK 465 MET A 963 REMARK 465 HIS A 964 REMARK 465 LEU A 965 REMARK 465 PRO A 966 REMARK 465 SER A 967 REMARK 465 PRO A 968 REMARK 465 THR A 969 REMARK 465 ASP A 970 REMARK 465 SER A 971 REMARK 465 ASN A 972 REMARK 465 PHE A 973 REMARK 465 TYR A 974 REMARK 465 ARG A 975 REMARK 465 ALA A 976 REMARK 465 LEU A 977 REMARK 465 MET A 978 REMARK 465 ASP A 979 REMARK 465 GLU A 980 REMARK 465 GLU A 981 REMARK 465 ASP A 982 REMARK 465 MET A 983 REMARK 465 ASP A 984 REMARK 465 ALA A 989 REMARK 465 ASP A 990 REMARK 465 GLU A 991 REMARK 465 TYR A 992 REMARK 465 LEU A 993 REMARK 465 ILE A 994 REMARK 465 PRO A 995 REMARK 465 GLN A 996 REMARK 465 GLN A 997 REMARK 465 GLY A 998 REMARK 465 GLY B 669 REMARK 465 ALA B 670 REMARK 465 MET B 671 REMARK 465 GLY B 672 REMARK 465 GLU B 673 REMARK 465 ALA B 674 REMARK 465 PRO B 675 REMARK 465 ASN B 676 REMARK 465 GLU B 848 REMARK 465 GLY B 849 REMARK 465 GLY B 850 REMARK 465 ASP B 960 REMARK 465 GLU B 961 REMARK 465 ARG B 962 REMARK 465 MET B 963 REMARK 465 HIS B 964 REMARK 465 LEU B 965 REMARK 465 PRO B 966 REMARK 465 SER B 967 REMARK 465 PRO B 968 REMARK 465 THR B 969 REMARK 465 ASP B 970 REMARK 465 SER B 971 REMARK 465 ASN B 972 REMARK 465 PHE B 973 REMARK 465 TYR B 974 REMARK 465 ARG B 975 REMARK 465 ALA B 976 REMARK 465 LEU B 977 REMARK 465 MET B 978 REMARK 465 ASP B 979 REMARK 465 GLU B 980 REMARK 465 GLU B 981 REMARK 465 ASP B 982 REMARK 465 MET B 983 REMARK 465 ASP B 984 REMARK 465 LEU B 993 REMARK 465 ILE B 994 REMARK 465 PRO B 995 REMARK 465 GLN B 996 REMARK 465 GLN B 997 REMARK 465 GLY B 998
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 713 CG CD CE NZ REMARK 470 LYS A 733 CG CD CE NZ REMARK 470 LYS A 822 CG CD CE NZ REMARK 470 GLU A 842 CG CD OE1 OE2 REMARK 470 LYS A 843 CG CD CE NZ REMARK 470 GLU A 844 CG CD OE1 OE2 REMARK 470 LYS A 905 CG CD CE NZ REMARK 470 GLU A 943 CG CD OE1 OE2 REMARK 470 GLN A 958 CG CD OE1 NE2 REMARK 470 GLN B 677 CG CD OE1 NE2 REMARK 470 LYS B 713 CG CD CE NZ REMARK 470 LYS B 733 CG CD CE NZ REMARK 470 GLU B 842 CG CD OE1 OE2 REMARK 470 LYS B 843 CG CD CE NZ REMARK 470 GLU B 844 CG CD OE1 OE2 REMARK 470 LYS B 905 CG CD CE NZ REMARK 470 GLN B 958 CG CD OE1 NE2 REMARK 470 VAL B 987 CG1 CG2 REMARK 470 GLU B 991 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 704 N - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 685 23.23 -62.81 REMARK 500 ILE A 708 77.82 -104.76 REMARK 500 GLU A 712 165.39 -49.38 REMARK 500 LYS A 713 56.34 -111.73 REMARK 500 THR A 759 -133.10 -149.57 REMARK 500 HIS A 781 48.77 -150.21 REMARK 500 ASP A 783 84.97 -154.71 REMARK 500 ASN A 784 -7.91 -156.21 REMARK 500 ARG A 812 -18.97 73.69 REMARK 500 HIS A 826 102.57 177.39 REMARK 500 LEU A 838 9.22 -65.92 REMARK 500 GLU A 842 94.94 -59.58 REMARK 500 PRO A 853 63.71 -67.69 REMARK 500 LYS A 855 11.68 -69.28 REMARK 500 SER A 901 -70.53 -63.60 REMARK 500 ILE A 902 -7.84 -52.09 REMARK 500 ALA B 678 -80.13 -118.09 REMARK 500 LEU B 679 17.31 37.69 REMARK 500 ILE B 691 -63.89 -100.08 REMARK 500 GLU B 712 140.04 176.91 REMARK 500 PRO B 729 24.84 -77.86 REMARK 500 THR B 759 -133.70 -150.21 REMARK 500 HIS B 781 53.53 -108.52 REMARK 500 LYS B 782 -17.63 -46.46 REMARK 500 ASP B 783 115.83 -177.27 REMARK 500 ASN B 784 11.15 158.99 REMARK 500 ARG B 812 -3.07 68.95 REMARK 500 ASP B 813 64.82 -161.63 REMARK 500 HIS B 826 105.00 -171.36 REMARK 500 LEU B 838 8.64 -65.48 REMARK 500 GLU B 842 113.73 -31.69 REMARK 500 LYS B 843 -72.37 -61.65 REMARK 500 PRO B 853 72.83 -62.95 REMARK 500 LYS B 855 1.22 -67.93 REMARK 500 ARG B 934 153.98 -49.29 REMARK 500 PRO B 935 177.10 -59.10 REMARK 500 PHE B 937 -32.99 -37.20 REMARK 500 ASP B 950 54.80 -167.53 REMARK 500 VAL B 986 76.82 -7.73 REMARK 500 VAL B 987 -113.05 -80.53 REMARK 500 ASP B 988 136.39 171.98 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 818 OD1 REMARK 620 2 ASP A 831 OD2 74.0 REMARK 620 3 HOH A 100 O 70.4 72.2 REMARK 620 4 ANP A 301 O1B 113.0 169.5 102.2 REMARK 620 5 ANP A 301 O2A 147.4 83.6 80.5 86.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 831 OD2 REMARK 620 2 ANP B 302 O2B 106.9 REMARK 620 3 ANP B 302 O2A 79.7 83.8 REMARK 620 4 HOH B 38 O 52.3 54.9 71.1 REMARK 620 5 ANP B 302 O3A 124.2 49.7 51.7 83.6 REMARK 620 6 ASN B 818 OD1 66.0 72.9 129.6 58.8 122.6 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 401 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 402 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 403 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 405 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 406 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 407 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 409 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 410 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 411 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 301 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 302
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GS2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ACTIVE EGFR KINASE DOMAIN REMARK 900 RELATED ID: 2GS6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ACTIVE EGFR KINASE DOMAIN IN REMARK 900 COMPLEX WITH AN ATP ANALOG-PEPTIDE CONJUGATE
DBREF 2GS7 A 672 998 UNP P00533 EGFR_HUMAN 696 1022 DBREF 2GS7 B 672 998 UNP P00533 EGFR_HUMAN 696 1022
SEQADV 2GS7 GLY A 669 UNP P00533 CLONING ARTIFACT SEQADV 2GS7 ALA A 670 UNP P00533 CLONING ARTIFACT SEQADV 2GS7 MET A 671 UNP P00533 CLONING ARTIFACT SEQADV 2GS7 ARG A 924 UNP P00533 VAL 948 ENGINEERED SEQADV 2GS7 GLY B 669 UNP P00533 CLONING ARTIFACT SEQADV 2GS7 ALA B 670 UNP P00533 CLONING ARTIFACT SEQADV 2GS7 MET B 671 UNP P00533 CLONING ARTIFACT SEQADV 2GS7 ARG B 924 UNP P00533 VAL 948 ENGINEERED
SEQRES 1 A 330 GLY ALA MET GLY GLU ALA PRO ASN GLN ALA LEU LEU ARG SEQRES 2 A 330 ILE LEU LYS GLU THR GLU PHE LYS LYS ILE LYS VAL LEU SEQRES 3 A 330 GLY SER GLY ALA PHE GLY THR VAL TYR LYS GLY LEU TRP SEQRES 4 A 330 ILE PRO GLU GLY GLU LYS VAL LYS ILE PRO VAL ALA ILE SEQRES 5 A 330 LYS GLU LEU ARG GLU ALA THR SER PRO LYS ALA ASN LYS SEQRES 6 A 330 GLU ILE LEU ASP GLU ALA TYR VAL MET ALA SER VAL ASP SEQRES 7 A 330 ASN PRO HIS VAL CYS ARG LEU LEU GLY ILE CYS LEU THR SEQRES 8 A 330 SER THR VAL GLN LEU ILE THR GLN LEU MET PRO PHE GLY SEQRES 9 A 330 CYS LEU LEU ASP TYR VAL ARG GLU HIS LYS ASP ASN ILE SEQRES 10 A 330 GLY SER GLN TYR LEU LEU ASN TRP CYS VAL GLN ILE ALA SEQRES 11 A 330 LYS GLY MET ASN TYR LEU GLU ASP ARG ARG LEU VAL HIS SEQRES 12 A 330 ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL LYS THR PRO SEQRES 13 A 330 GLN HIS VAL LYS ILE THR ASP PHE GLY LEU ALA LYS LEU SEQRES 14 A 330 LEU GLY ALA GLU GLU LYS GLU TYR HIS ALA GLU GLY GLY SEQRES 15 A 330 LYS VAL PRO ILE LYS TRP MET ALA LEU GLU SER ILE LEU SEQRES 16 A 330 HIS ARG ILE TYR THR HIS GLN SER ASP VAL TRP SER TYR SEQRES 17 A 330 GLY VAL THR VAL TRP GLU LEU MET THR PHE GLY SER LYS SEQRES 18 A 330 PRO TYR ASP GLY ILE PRO ALA SER GLU ILE SER SER ILE SEQRES 19 A 330 LEU GLU LYS GLY GLU ARG LEU PRO GLN PRO PRO ILE CYS SEQRES 20 A 330 THR ILE ASP VAL TYR MET ILE MET ARG LYS CYS TRP MET SEQRES 21 A 330 ILE ASP ALA ASP SER ARG PRO LYS PHE ARG GLU LEU ILE SEQRES 22 A 330 ILE GLU PHE SER LYS MET ALA ARG ASP PRO GLN ARG TYR SEQRES 23 A 330 LEU VAL ILE GLN GLY ASP GLU ARG MET HIS LEU PRO SER SEQRES 24 A 330 PRO THR ASP SER ASN PHE TYR ARG ALA LEU MET ASP GLU SEQRES 25 A 330 GLU ASP MET ASP ASP VAL VAL ASP ALA ASP GLU TYR LEU SEQRES 26 A 330 ILE PRO GLN GLN GLY SEQRES 1 B 330 GLY ALA MET GLY GLU ALA PRO ASN GLN ALA LEU LEU ARG SEQRES 2 B 330 ILE LEU LYS GLU THR GLU PHE LYS LYS ILE LYS VAL LEU SEQRES 3 B 330 GLY SER GLY ALA PHE GLY THR VAL TYR LYS GLY LEU TRP SEQRES 4 B 330 ILE PRO GLU GLY GLU LYS VAL LYS ILE PRO VAL ALA ILE SEQRES 5 B 330 LYS GLU LEU ARG GLU ALA THR SER PRO LYS ALA ASN LYS SEQRES 6 B 330 GLU ILE LEU ASP GLU ALA TYR VAL MET ALA SER VAL ASP SEQRES 7 B 330 ASN PRO HIS VAL CYS ARG LEU LEU GLY ILE CYS LEU THR SEQRES 8 B 330 SER THR VAL GLN LEU ILE THR GLN LEU MET PRO PHE GLY SEQRES 9 B 330 CYS LEU LEU ASP TYR VAL ARG GLU HIS LYS ASP ASN ILE SEQRES 10 B 330 GLY SER GLN TYR LEU LEU ASN TRP CYS VAL GLN ILE ALA SEQRES 11 B 330 LYS GLY MET ASN TYR LEU GLU ASP ARG ARG LEU VAL HIS SEQRES 12 B 330 ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL LYS THR PRO SEQRES 13 B 330 GLN HIS VAL LYS ILE THR ASP PHE GLY LEU ALA LYS LEU SEQRES 14 B 330 LEU GLY ALA GLU GLU LYS GLU TYR HIS ALA GLU GLY GLY SEQRES 15 B 330 LYS VAL PRO ILE LYS TRP MET ALA LEU GLU SER ILE LEU SEQRES 16 B 330 HIS ARG ILE TYR THR HIS GLN SER ASP VAL TRP SER TYR SEQRES 17 B 330 GLY VAL THR VAL TRP GLU LEU MET THR PHE GLY SER LYS SEQRES 18 B 330 PRO TYR ASP GLY ILE PRO ALA SER GLU ILE SER SER ILE SEQRES 19 B 330 LEU GLU LYS GLY GLU ARG LEU PRO GLN PRO PRO ILE CYS SEQRES 20 B 330 THR ILE ASP VAL TYR MET ILE MET ARG LYS CYS TRP MET SEQRES 21 B 330 ILE ASP ALA ASP SER ARG PRO LYS PHE ARG GLU LEU ILE SEQRES 22 B 330 ILE GLU PHE SER LYS MET ALA ARG ASP PRO GLN ARG TYR SEQRES 23 B 330 LEU VAL ILE GLN GLY ASP GLU ARG MET HIS LEU PRO SER SEQRES 24 B 330 PRO THR ASP SER ASN PHE TYR ARG ALA LEU MET ASP GLU SEQRES 25 B 330 GLU ASP MET ASP ASP VAL VAL ASP ALA ASP GLU TYR LEU SEQRES 26 B 330 ILE PRO GLN GLN GLY
HET MG B 201 1 HET MG A 202 1 HET IOD B 401 1 HET IOD A 402 1 HET IOD A 403 1 HET IOD B 404 1 HET IOD B 405 1 HET IOD A 406 1 HET IOD B 407 1 HET IOD B 408 1 HET IOD A 409 1 HET IOD A 410 1 HET IOD B 411 1 HET ANP A 301 31 HET ANP B 302 31
HETNAM MG MAGNESIUM ION HETNAM IOD IODIDE ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
FORMUL 3 MG 2(MG 2+) FORMUL 5 IOD 11(I 1-) FORMUL 16 ANP 2(C10 H17 N6 O12 P3) FORMUL 18 HOH *169(H2 O)
HELIX 1 1 ALA A 731 ALA A 743 1 13 HELIX 2 2 CYS A 773 GLU A 780 1 8 HELIX 3 3 GLY A 786 ARG A 807 1 22 HELIX 4 4 ALA A 815 ARG A 817 5 3 HELIX 5 5 GLY A 833 LEU A 838 1 6 HELIX 6 6 PRO A 853 MET A 857 5 5 HELIX 7 7 ALA A 858 ARG A 865 1 8 HELIX 8 8 THR A 868 THR A 885 1 18 HELIX 9 9 GLU A 898 LYS A 905 1 8 HELIX 10 10 THR A 916 TRP A 927 1 12 HELIX 11 11 ASP A 930 ARG A 934 5 5 HELIX 12 12 LYS A 936 ALA A 948 1 13 HELIX 13 13 ASP A 950 LEU A 955 1 6 HELIX 14 14 ALA B 731 ALA B 743 1 13 HELIX 15 15 CYS B 773 HIS B 781 1 9 HELIX 16 16 GLY B 786 ARG B 807 1 22 HELIX 17 17 ALA B 815 ARG B 817 5 3 HELIX 18 18 GLY B 833 LEU B 838 1 6 HELIX 19 19 PRO B 853 MET B 857 5 5 HELIX 20 20 ALA B 858 ARG B 865 1 8 HELIX 21 21 THR B 868 THR B 885 1 18 HELIX 22 22 PRO B 895 SER B 897 5 3 HELIX 23 23 GLU B 898 LYS B 905 1 8 HELIX 24 24 THR B 916 TRP B 927 1 12 HELIX 25 25 LYS B 936 ALA B 948 1 13 HELIX 26 26 ASP B 950 LEU B 955 1 6
SHEET 1 A 6 ARG A 681 ILE A 682 0 SHEET 2 A 6 GLY A 755 ILE A 756 1 O ILE A 756 N ARG A 681 SHEET 3 A 6 GLN A 763 GLN A 767 -1 O ILE A 765 N GLY A 755 SHEET 4 A 6 ILE A 716 LEU A 723 -1 N LYS A 721 O LEU A 764 SHEET 5 A 6 GLY A 700 TRP A 707 -1 N TRP A 707 O ILE A 716 SHEET 6 A 6 PHE A 688 GLY A 695 -1 N LYS A 692 O LYS A 704 SHEET 1 B 2 VAL A 819 THR A 823 0 SHEET 2 B 2 HIS A 826 ILE A 829 -1 O LYS A 828 N LEU A 820 SHEET 1 C 6 ARG B 681 ILE B 682 0 SHEET 2 C 6 GLY B 755 LEU B 758 1 O ILE B 756 N ARG B 681 SHEET 3 C 6 VAL B 762 GLN B 767 -1 O ILE B 765 N GLY B 755 SHEET 4 C 6 ILE B 716 LEU B 723 -1 N LYS B 721 O LEU B 764 SHEET 5 C 6 GLY B 700 TRP B 707 -1 N TRP B 707 O ILE B 716 SHEET 6 C 6 PHE B 688 SER B 696 -1 N LYS B 692 O LYS B 704 SHEET 1 D 2 VAL B 819 THR B 823 0 SHEET 2 D 2 HIS B 826 ILE B 829 -1 O LYS B 828 N LEU B 820
LINK MG MG A 202 OD1 ASN A 818 1555 1555 2.40 LINK MG MG A 202 OD2 ASP A 831 1555 1555 2.47 LINK MG MG A 202 O HOH A 100 1555 1555 2.63 LINK MG MG A 202 O1B ANP A 301 1555 1555 2.85 LINK MG MG A 202 O2A ANP A 301 1555 1555 2.38 LINK MG MG B 201 OD2 ASP B 831 1555 1555 2.59 LINK MG MG B 201 O2B ANP B 302 1555 1555 2.71 LINK MG MG B 201 O2A ANP B 302 1555 1555 2.49 LINK MG MG B 201 O HOH B 38 1555 1555 2.88 LINK MG MG B 201 O3A ANP B 302 1555 1555 3.12 LINK MG MG B 201 OD1 ASN B 818 1555 1555 2.64
SITE 1 AC1 4 HOH B 38 ANP B 302 ASN B 818 ASP B 831 SITE 1 AC2 4 HOH A 100 ANP A 301 ASN A 818 ASP A 831 SITE 1 AC3 2 LYS A 715 GLN B 825 SITE 1 AC4 1 GLN A 825 SITE 1 AC5 1 LYS A 855 SITE 1 AC6 4 HOH A 33 PRO A 770 LYS B 704 PRO B 770 SITE 1 AC7 2 VAL A 810 ARG A 812 SITE 1 AC8 1 ARG B 812 SITE 1 AC9 1 ASN A 747 SITE 1 BC1 1 TYR A 891 SITE 1 BC2 1 TYR B 891 SITE 1 BC3 14 HOH A 100 MG A 202 LEU A 694 GLY A 695 SITE 2 BC3 14 GLY A 697 VAL A 702 ALA A 719 LYS A 721 SITE 3 BC3 14 THR A 766 GLN A 767 MET A 769 ARG A 817 SITE 4 BC3 14 LEU A 820 ASP A 831 SITE 1 BC4 18 HOH B 38 HOH B 61 HOH B 116 MG B 201 SITE 2 BC4 18 LEU B 694 GLY B 695 GLY B 697 ALA B 698 SITE 3 BC4 18 VAL B 702 ALA B 719 LYS B 721 THR B 766 SITE 4 BC4 18 GLN B 767 MET B 769 ARG B 817 ASN B 818 SITE 5 BC4 18 LEU B 820 ASP B 831
CRYST1 64.601 85.253 78.327 90.00 96.36 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015480 0.000000 0.001725 0.00000
SCALE2 0.000000 0.011730 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012846 0.00000