10 20 30 40 50 60 70 80 2GPP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 18-APR-06 2GPP
TITLE ESTROGEN RELATED RECEPTOR-GAMMA LIGAND BINDING DOMAIN TITLE 2 COMPLEXED WITH A RIP140 PEPTIDE AND SYNTHETIC LIGAND TITLE 3 GSK4716
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN-RELATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES (229-458); COMPND 5 SYNONYM: ESTROGEN RECEPTOR-RELATED PROTEIN 3, ERR GAMMA-2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR-INTERACTING PROTEIN 1; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: RESIDUES (366-390); COMPND 11 SYNONYM: NUCLEAR FACTOR RIP140, RECEPTOR-INTERACTING COMPND 12 PROTEIN 140; COMPND 13 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESRRG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSET; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: CHEMICALLY SYNTHESIZED. OCCURS NATURALLY IN SOURCE 14 HUMANS.
KEYWDS ESTROGEN RELATED RECEPTOR, ERR, ERRG, ESRRG, NUCLEAR KEYWDS 2 RECEPTOR, STEROID RECEPTOR, RIP140, TRANSCRIPTION
EXPDTA X-RAY DIFFRACTION
AUTHOR L.WANG,W.J.ZUERCHER,T.G.CONSLER,M.H.LAMBERT,A.B.MILLER, AUTHOR 2 L.A.OSBAND-MILLER,D.D.MCKEE,T.M.WILLSON,R.T.NOLTE
REVDAT 3 24-FEB-09 2GPP 1 VERSN REVDAT 2 30-OCT-07 2GPP 1 JRNL REVDAT 1 26-SEP-06 2GPP 0
JRNL AUTH L.WANG,W.J.ZUERCHER,T.G.CONSLER,M.H.LAMBERT, JRNL AUTH 2 A.B.MILLER,L.A.ORBAND-MILLER,D.D.MCKEE,T.M.WILLSON, JRNL AUTH 3 R.T.NOLTE JRNL TITL X-RAY CRYSTAL STRUCTURES OF THE ESTROGEN-RELATED JRNL TITL 2 RECEPTOR-GAMMA LIGAND BINDING DOMAIN IN THREE JRNL TITL 3 FUNCTIONAL STATES REVEAL THE MOLECULAR BASIS OF JRNL TITL 4 SMALL MOLECULE REGULATION. JRNL REF J.BIOL.CHEM. V. 281 37773 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16990259 JRNL DOI 10.1074/JBC.M608410200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 25065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 764 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1590 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3760 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.86000 REMARK 3 B22 (A**2) : -0.86000 REMARK 3 B33 (A**2) : 1.29000 REMARK 3 B12 (A**2) : -0.43000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.397 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.269 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.449 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3849 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3619 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5210 ; 1.215 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8455 ; 0.733 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 473 ; 5.576 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;35.503 ;25.849 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 730 ;15.579 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.940 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4176 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 679 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 945 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3558 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1914 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2198 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 108 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.178 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 28 ; 0.198 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.002 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2570 ; 0.609 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 953 ; 0.146 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3843 ; 0.939 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1602 ; 1.222 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1367 ; 1.911 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 233 A 457 5 REMARK 3 1 B 233 B 456 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1316 ; NULL ; NULL REMARK 3 LOOSE POSITIONAL 1 A (A): 2123 ; NULL ; NULL REMARK 3 MEDIUM THERMAL 1 A (A**2): 1316 ; NULL ; NULL REMARK 3 LOOSE THERMAL 1 A (A**2): 2123 ; NULL ; NULL REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 378 C 388 5 REMARK 3 1 D 378 D 390 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 C (A): 65 ; NULL ; NULL REMARK 3 LOOSE POSITIONAL 2 C (A): 108 ; NULL ; NULL REMARK 3 MEDIUM THERMAL 2 C (A**2): 65 ; NULL ; NULL REMARK 3 LOOSE THERMAL 2 C (A**2): 108 ; NULL ; NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 2GPP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037402.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25066 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.40300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2GP7 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9% PEG 20K 0.1M MES BUFFER, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 101.90500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 58.83488 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.82000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 101.90500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 58.83488 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.82000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 101.90500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 58.83488 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.82000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 117.66976 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 35.64000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 117.66976 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 35.64000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 117.66976 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 35.64000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 229 REMARK 465 ALA A 230 REMARK 465 LYS A 231 REMARK 465 LYS A 232 REMARK 465 VAL A 458 REMARK 465 PRO B 229 REMARK 465 ALA B 230 REMARK 465 LYS B 231 REMARK 465 LYS B 232 REMARK 465 LYS B 457 REMARK 465 VAL B 458 REMARK 465 LEU C 366 REMARK 465 GLU C 367 REMARK 465 ARG C 368 REMARK 465 ASN C 369 REMARK 465 ASN C 370 REMARK 465 ILE C 371 REMARK 465 LYS C 372 REMARK 465 GLN C 373 REMARK 465 ALA C 374 REMARK 465 ALA C 375 REMARK 465 ASN C 376 REMARK 465 ASN C 377 REMARK 465 ILE C 389 REMARK 465 PRO C 390 REMARK 465 LEU D 366 REMARK 465 GLU D 367 REMARK 465 ARG D 368 REMARK 465 ASN D 369 REMARK 465 ASN D 370 REMARK 465 ILE D 371 REMARK 465 LYS D 372 REMARK 465 GLN D 373 REMARK 465 ALA D 374 REMARK 465 ALA D 375 REMARK 465 ASN D 376 REMARK 465 ASN D 377
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 338 CD CE NZ REMARK 470 LYS A 390 CD CE NZ REMARK 470 LYS A 457 CG CD CE NZ REMARK 470 LYS C 385 CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 330 86.54 -151.81 REMARK 500 LYS A 363 -52.44 -24.04 REMARK 500 ASN A 376 36.53 -90.74 REMARK 500 ASP B 259 86.82 -61.02 REMARK 500 ASN B 376 34.77 -99.65 REMARK 500 SER C 386 -158.95 -69.23 REMARK 500 GLN C 387 -94.74 -117.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER C 386 GLN C 387 -144.21 REMARK 500 GLN C 387 THR C 388 -147.94 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1BA A 459
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GP7 RELATED DB: PDB REMARK 900 RELATED ID: 2GPO RELATED DB: PDB REMARK 900 RELATED ID: 2GPU RELATED DB: PDB REMARK 900 RELATED ID: 2GPV RELATED DB: PDB
DBREF 2GPP A 229 458 UNP P62508 ERR3_HUMAN 229 458 DBREF 2GPP B 229 458 UNP P62508 ERR3_HUMAN 229 458 DBREF 2GPP C 366 390 UNP P48552 NRIP1_HUMAN 366 390 DBREF 2GPP D 366 390 UNP P48552 NRIP1_HUMAN 366 390
SEQRES 1 A 230 PRO ALA LYS LYS PRO TYR ASN LYS ILE VAL SER HIS LEU SEQRES 2 A 230 LEU VAL ALA GLU PRO GLU LYS ILE TYR ALA MET PRO ASP SEQRES 3 A 230 PRO THR VAL PRO ASP SER ASP ILE LYS ALA LEU THR THR SEQRES 4 A 230 LEU CYS ASP LEU ALA ASP ARG GLU LEU VAL VAL ILE ILE SEQRES 5 A 230 GLY TRP ALA LYS HIS ILE PRO GLY PHE SER THR LEU SER SEQRES 6 A 230 LEU ALA ASP GLN MET SER LEU LEU GLN SER ALA TRP MET SEQRES 7 A 230 GLU ILE LEU ILE LEU GLY VAL VAL TYR ARG SER LEU SER SEQRES 8 A 230 PHE GLU ASP GLU LEU VAL TYR ALA ASP ASP TYR ILE MET SEQRES 9 A 230 ASP GLU ASP GLN SER LYS LEU ALA GLY LEU LEU ASP LEU SEQRES 10 A 230 ASN ASN ALA ILE LEU GLN LEU VAL LYS LYS TYR LYS SER SEQRES 11 A 230 MET LYS LEU GLU LYS GLU GLU PHE VAL THR LEU LYS ALA SEQRES 12 A 230 ILE ALA LEU ALA ASN SER ASP SER MET HIS ILE GLU ASP SEQRES 13 A 230 VAL GLU ALA VAL GLN LYS LEU GLN ASP VAL LEU HIS GLU SEQRES 14 A 230 ALA LEU GLN ASP TYR GLU ALA GLY GLN HIS MET GLU ASP SEQRES 15 A 230 PRO ARG ARG ALA GLY LYS MET LEU MET THR LEU PRO LEU SEQRES 16 A 230 LEU ARG GLN THR SER THR LYS ALA VAL GLN HIS PHE TYR SEQRES 17 A 230 ASN ILE LYS LEU GLU GLY LYS VAL PRO MET HIS LYS LEU SEQRES 18 A 230 PHE LEU GLU MET LEU GLU ALA LYS VAL SEQRES 1 B 230 PRO ALA LYS LYS PRO TYR ASN LYS ILE VAL SER HIS LEU SEQRES 2 B 230 LEU VAL ALA GLU PRO GLU LYS ILE TYR ALA MET PRO ASP SEQRES 3 B 230 PRO THR VAL PRO ASP SER ASP ILE LYS ALA LEU THR THR SEQRES 4 B 230 LEU CYS ASP LEU ALA ASP ARG GLU LEU VAL VAL ILE ILE SEQRES 5 B 230 GLY TRP ALA LYS HIS ILE PRO GLY PHE SER THR LEU SER SEQRES 6 B 230 LEU ALA ASP GLN MET SER LEU LEU GLN SER ALA TRP MET SEQRES 7 B 230 GLU ILE LEU ILE LEU GLY VAL VAL TYR ARG SER LEU SER SEQRES 8 B 230 PHE GLU ASP GLU LEU VAL TYR ALA ASP ASP TYR ILE MET SEQRES 9 B 230 ASP GLU ASP GLN SER LYS LEU ALA GLY LEU LEU ASP LEU SEQRES 10 B 230 ASN ASN ALA ILE LEU GLN LEU VAL LYS LYS TYR LYS SER SEQRES 11 B 230 MET LYS LEU GLU LYS GLU GLU PHE VAL THR LEU LYS ALA SEQRES 12 B 230 ILE ALA LEU ALA ASN SER ASP SER MET HIS ILE GLU ASP SEQRES 13 B 230 VAL GLU ALA VAL GLN LYS LEU GLN ASP VAL LEU HIS GLU SEQRES 14 B 230 ALA LEU GLN ASP TYR GLU ALA GLY GLN HIS MET GLU ASP SEQRES 15 B 230 PRO ARG ARG ALA GLY LYS MET LEU MET THR LEU PRO LEU SEQRES 16 B 230 LEU ARG GLN THR SER THR LYS ALA VAL GLN HIS PHE TYR SEQRES 17 B 230 ASN ILE LYS LEU GLU GLY LYS VAL PRO MET HIS LYS LEU SEQRES 18 B 230 PHE LEU GLU MET LEU GLU ALA LYS VAL SEQRES 1 C 25 LEU GLU ARG ASN ASN ILE LYS GLN ALA ALA ASN ASN SER SEQRES 2 C 25 LEU LEU LEU HIS LEU LEU LYS SER GLN THR ILE PRO SEQRES 1 D 25 LEU GLU ARG ASN ASN ILE LYS GLN ALA ALA ASN ASN SER SEQRES 2 D 25 LEU LEU LEU HIS LEU LEU LYS SER GLN THR ILE PRO
HET 1BA A 459 21
HETNAM 1BA 4-HYDROXY-N'-(4-ISOPROPYLBENZYL)BENZOHYDRAZIDE
FORMUL 5 1BA C17 H20 N2 O2 FORMUL 6 HOH *25(H2 O)
HELIX 1 1 ASN A 235 LEU A 242 1 8 HELIX 2 2 SER A 260 HIS A 285 1 26 HELIX 3 3 SER A 293 SER A 317 1 25 HELIX 4 4 ASP A 333 GLY A 341 1 9 HELIX 5 5 LEU A 342 MET A 359 1 18 HELIX 6 6 GLU A 362 ASN A 376 1 15 HELIX 7 7 ASP A 384 HIS A 407 1 24 HELIX 8 8 ARG A 412 MET A 419 1 8 HELIX 9 9 THR A 420 GLY A 442 1 23 HELIX 10 10 HIS A 447 GLU A 455 1 9 HELIX 11 11 ASN B 235 GLU B 245 1 11 HELIX 12 12 SER B 260 HIS B 285 1 26 HELIX 13 13 SER B 293 SER B 317 1 25 HELIX 14 14 LEU B 318 PHE B 320 5 3 HELIX 15 15 GLU B 334 GLY B 341 1 8 HELIX 16 16 LEU B 342 LYS B 360 1 19 HELIX 17 17 GLU B 362 ASN B 376 1 15 HELIX 18 18 ASP B 384 HIS B 407 1 24 HELIX 19 19 ARG B 412 MET B 419 1 8 HELIX 20 20 THR B 420 GLY B 442 1 23 HELIX 21 21 HIS B 447 GLU B 455 1 9 HELIX 22 22 SER C 378 SER C 386 1 9 HELIX 23 23 SER D 378 SER D 386 1 9
SHEET 1 A 2 LEU A 324 ALA A 327 0 SHEET 2 A 2 TYR A 330 MET A 332 -1 O MET A 332 N LEU A 324 SHEET 1 B 2 GLU B 323 ALA B 327 0 SHEET 2 B 2 TYR B 330 ASP B 333 -1 O MET B 332 N LEU B 324
CISPEP 1 GLU A 245 PRO A 246 0 -7.83
SITE 1 AC1 14 HOH A 1 HOH A 23 GLU A 247 LYS A 248 SITE 2 AC1 14 ILE A 249 LEU A 268 ALA A 272 GLU A 275 SITE 3 AC1 14 LEU A 309 VAL A 313 ARG A 316 VAL A 325 SITE 4 AC1 14 TYR A 326 ASP A 328
CRYST1 203.810 203.810 53.460 90.00 90.00 120.00 H 3 18
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.004910 0.002830 0.000000 0.00000
SCALE2 0.000000 0.005670 0.000000 0.00000
SCALE3 0.000000 0.000000 0.018710 0.00000