10 20 30 40 50 60 70 80 2GOV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HEME BINDING PROTEIN 14-APR-06 2GOV
TITLE SOLUTION STRUCTURE OF MURINE P22HBP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEME-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P22HBP; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: HEBP1, HBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNJ2
KEYWDS P22HBP, HEME BINDING, STRUCTURAL GENOMICS, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, PSI, CENTER FOR EUKARYOTIC STRUCTURAL KEYWDS 3 GENOMICS, CESG, HEME BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR B.F.VOLKMAN,J.S.DIAS,B.J.GOODFELLOW,F.C.PETERSON,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG)
REVDAT 4 24-FEB-09 2GOV 1 VERSN REVDAT 3 31-OCT-06 2GOV 1 JRNL REVDAT 2 05-SEP-06 2GOV 1 JRNL REVDAT 1 09-MAY-06 2GOV 0
JRNL AUTH J.S.DIAS,A.L.MACEDO,G.C.FERREIRA,F.C.PETERSON, JRNL AUTH 2 B.F.VOLKMAN,B.J.GOODFELLOW JRNL TITL THE FIRST STRUCTURE FROM THE SOUL/HBP FAMILY OF JRNL TITL 2 HEME-BINDING PROTEINS, MURINE P22HBP. JRNL REF J.BIOL.CHEM. V. 281 31553 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16905545 JRNL DOI 10.1074/JBC.M605988200
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.S.DIAS,A.L.MACEDO,G.C.FERREIRA,N.JEANTY, REMARK 1 AUTH 2 S.TAKETANI,B.J.GOODFELLOW,F.C.PETERSON,B.F.VOLKMAN REMARK 1 TITL 1H, 15N AND 13C RESONANCE ASSIGNMENTS OF THE REMARK 1 TITL 2 HEME-BINDING PROTEIN MURINE P22HBP. REMARK 1 REF J.BIOMOL.NMR V. 32 338 2005 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 16211492 REMARK 1 DOI 10.1007/S10858-005-0470-8
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.3 REMARK 3 AUTHORS : SCHWIETERS, C.D., KUSZEWSKI, J.J., TJANDRA, N., REMARK 3 CLORE, G.M. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1851 NOE CONSTRAINTS (372 INTRA, 425 SEQUENTIAL, 276 MEDIUM REMARK 3 AND 778 LONG RANGE CONSTRAINTS) AND 276 PHI AND PSI DIHEDRAL REMARK 3 ANGLE CONSTRAINTS.
REMARK 4 REMARK 4 2GOV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037377.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : 28 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM P22HBP U-15N/13C, 50 REMARK 210 MM SODIUM PHOSPHATE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, 3D_13C- REMARK 210 SEPARATED_NOESY (AROMATIC) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE 2004, REMARK 210 XEASY 1.3, SPSCAN 1.1.0, REMARK 210 GARANT 2.1, CYANA 2.1 REMARK 210 METHOD USED : AUTOMATED METHODS WERE USED REMARK 210 FOR BACKBONE CHEMICAL SHIFT REMARK 210 ASSIGNMENT AND ITERATIVE NOE REMARK 210 REFINEMENT. FINAL STRUCTURES REMARK 210 WERE OBTAINED BY MOLECULAR REMARK 210 DYNAMICS IN EXPLICIT SOLVENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ALL TRIPLE-RESONANCE AND NOESY SPECTRA WERE ACQUIRED REMARK 210 USING A CRYOGENIC PROBE.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -4 REMARK 465 LYS A -3 REMARK 465 GLN A -2 REMARK 465 SER A -1 REMARK 465 THR A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 15 -52.85 -142.37 REMARK 500 1 ASP A 28 -62.07 73.86 REMARK 500 1 ASP A 48 -40.02 72.22 REMARK 500 1 LYS A 177 -72.42 -153.87 REMARK 500 2 THR A 15 68.79 73.75 REMARK 500 2 ASP A 28 -49.38 75.48 REMARK 500 2 ASP A 48 -36.97 73.72 REMARK 500 2 LYS A 96 -70.10 -176.63 REMARK 500 2 SER A 111 92.22 -161.00 REMARK 500 2 TYR A 179 -81.80 -70.30 REMARK 500 3 SER A 22 158.74 179.08 REMARK 500 3 ASP A 28 -45.77 153.25 REMARK 500 3 ASP A 48 -25.31 72.80 REMARK 500 3 LYS A 96 -68.79 -168.77 REMARK 500 3 SER A 111 90.77 -160.74 REMARK 500 4 ASP A 28 -45.40 78.15 REMARK 500 4 LYS A 96 -65.74 105.09 REMARK 500 5 LEU A 9 -72.07 -153.72 REMARK 500 5 PHE A 10 173.84 61.29 REMARK 500 5 THR A 15 -69.45 -102.70 REMARK 500 5 ASP A 28 -64.77 72.58 REMARK 500 5 ASP A 48 -9.38 79.60 REMARK 500 5 LYS A 96 21.87 -70.35 REMARK 500 6 THR A 15 106.86 72.14 REMARK 500 6 ASP A 28 -58.28 72.74 REMARK 500 6 ASP A 48 -26.47 76.16 REMARK 500 6 PRO A 50 158.79 -49.48 REMARK 500 6 MET A 76 -38.51 178.00 REMARK 500 6 PRO A 159 36.56 -64.66 REMARK 500 6 LYS A 177 -67.48 162.40 REMARK 500 7 ASP A 28 -52.81 74.35 REMARK 500 7 ASP A 48 -12.89 68.73 REMARK 500 7 SER A 111 89.02 -160.18 REMARK 500 7 ASP A 165 27.66 49.38 REMARK 500 7 TYR A 172 -38.59 -142.46 REMARK 500 8 SER A 8 112.16 73.29 REMARK 500 8 VAL A 13 78.70 -109.08 REMARK 500 8 ASP A 28 -52.78 76.26 REMARK 500 8 ASP A 48 -16.37 67.60 REMARK 500 8 THR A 69 34.32 -92.06 REMARK 500 8 MET A 76 -75.66 -76.61 REMARK 500 8 LYS A 96 -62.41 178.19 REMARK 500 8 PRO A 105 151.25 -46.83 REMARK 500 8 SER A 111 97.30 -160.34 REMARK 500 8 TYR A 179 -81.45 -68.37 REMARK 500 9 ASP A 28 -41.92 82.00 REMARK 500 9 ASP A 48 -36.17 71.88 REMARK 500 9 THR A 69 33.76 -86.25 REMARK 500 9 LYS A 96 -66.33 -178.87 REMARK 500 9 SER A 111 87.77 -158.67 REMARK 500 9 PRO A 159 17.87 -64.59 REMARK 500 9 LYS A 177 -60.84 163.85 REMARK 500 10 ASP A 28 -53.67 72.72 REMARK 500 10 GLU A 37 0.50 -67.84 REMARK 500 10 ASP A 48 -32.75 70.30 REMARK 500 10 LYS A 96 -67.76 -176.82 REMARK 500 10 SER A 111 82.56 -153.69 REMARK 500 10 PRO A 159 27.31 -76.13 REMARK 500 10 TYR A 179 94.56 -66.86 REMARK 500 11 VAL A 13 97.78 -68.73 REMARK 500 11 SER A 22 165.68 179.69 REMARK 500 11 ASP A 28 -54.27 72.39 REMARK 500 11 ASP A 48 -27.39 75.58 REMARK 500 11 THR A 69 40.53 -81.48 REMARK 500 11 MET A 76 -64.18 66.43 REMARK 500 11 LYS A 96 -63.35 -176.63 REMARK 500 11 PRO A 159 20.14 -75.44 REMARK 500 12 VAL A 13 76.73 53.97 REMARK 500 12 TRP A 16 105.69 -43.13 REMARK 500 12 ASP A 28 -58.87 158.17 REMARK 500 12 ASP A 48 -26.88 73.64 REMARK 500 12 LEU A 94 148.29 65.30 REMARK 500 12 PRO A 159 29.13 -69.58 REMARK 500 12 PRO A 174 108.10 -52.20 REMARK 500 12 LYS A 177 -59.72 161.86 REMARK 500 13 ASP A 28 -51.88 83.15 REMARK 500 13 THR A 69 32.52 -81.83 REMARK 500 13 VAL A 80 143.32 -170.22 REMARK 500 13 LYS A 96 40.03 -75.82 REMARK 500 13 LYS A 177 -65.59 -107.50 REMARK 500 13 TYR A 179 -85.81 60.54 REMARK 500 14 SER A 8 -5.19 75.10 REMARK 500 14 ASP A 28 -49.79 72.21 REMARK 500 14 ASP A 48 -2.11 71.47 REMARK 500 14 THR A 69 32.92 -86.33 REMARK 500 14 PRO A 81 138.81 -34.98 REMARK 500 14 LYS A 96 -73.87 94.93 REMARK 500 15 ASP A 28 -48.82 148.32 REMARK 500 15 THR A 69 33.38 -84.08 REMARK 500 15 LYS A 96 -70.93 87.76 REMARK 500 15 PRO A 159 20.29 -71.13 REMARK 500 16 SER A 8 106.53 -170.98 REMARK 500 16 GLU A 14 89.76 51.47 REMARK 500 16 THR A 15 98.05 72.55 REMARK 500 16 ASP A 28 -39.63 129.41 REMARK 500 16 ASP A 48 -33.72 72.10 REMARK 500 16 MET A 76 79.81 59.30 REMARK 500 16 LYS A 96 -63.62 161.17 REMARK 500 16 SER A 111 99.63 -174.87 REMARK 500 16 PRO A 159 34.67 -70.79 REMARK 500 17 SER A 8 -20.44 66.73 REMARK 500 17 VAL A 13 77.77 59.69 REMARK 500 17 GLU A 14 -169.11 -111.20 REMARK 500 17 ASP A 28 -53.92 77.30 REMARK 500 17 ASP A 48 -31.81 75.58 REMARK 500 17 MET A 76 -80.67 70.62 REMARK 500 17 PRO A 81 139.98 -35.61 REMARK 500 17 LYS A 96 -62.81 -176.75 REMARK 500 17 PRO A 159 34.79 -69.83 REMARK 500 17 TYR A 172 -39.48 -138.99 REMARK 500 17 TYR A 179 -89.40 46.27 REMARK 500 18 THR A 15 126.10 77.21 REMARK 500 18 ASP A 28 -62.23 77.43 REMARK 500 18 ASP A 48 -34.28 73.51 REMARK 500 18 MET A 76 101.96 70.69 REMARK 500 18 LYS A 177 -66.12 -172.51 REMARK 500 19 LEU A 9 67.34 63.33 REMARK 500 19 ASP A 28 -61.80 75.88 REMARK 500 19 ASP A 48 -27.49 73.30 REMARK 500 19 THR A 69 49.53 -82.23 REMARK 500 19 LYS A 96 -75.44 -173.14 REMARK 500 19 SER A 111 87.73 -153.46 REMARK 500 19 PRO A 159 36.11 -70.94 REMARK 500 19 TYR A 172 -53.23 -141.22 REMARK 500 19 PRO A 174 106.74 -54.89 REMARK 500 19 PRO A 178 -33.39 -38.11 REMARK 500 20 ASP A 28 -50.58 80.23 REMARK 500 20 ASP A 48 -14.99 73.60 REMARK 500 20 THR A 69 30.11 -80.30 REMARK 500 20 LYS A 96 38.92 -82.00 REMARK 500 20 TYR A 179 -86.40 -51.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 14 ARG A 34 0.08 SIDE_CHAIN REMARK 500 17 ARG A 34 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.79130 RELATED DB: TARGETDB
DBREF 2GOV A 7 190 UNP Q9R257 HEBP1_MOUSE 7 190
SEQADV 2GOV MET A -4 UNP Q9R257 CLONING ARTIFACT SEQADV 2GOV LYS A -3 UNP Q9R257 CLONING ARTIFACT SEQADV 2GOV GLN A -2 UNP Q9R257 CLONING ARTIFACT SEQADV 2GOV SER A -1 UNP Q9R257 CLONING ARTIFACT SEQADV 2GOV THR A 0 UNP Q9R257 CLONING ARTIFACT SEQADV 2GOV HIS A 1 UNP Q9R257 CLONING ARTIFACT SEQADV 2GOV HIS A 2 UNP Q9R257 CLONING ARTIFACT SEQADV 2GOV HIS A 3 UNP Q9R257 CLONING ARTIFACT SEQADV 2GOV HIS A 4 UNP Q9R257 CLONING ARTIFACT SEQADV 2GOV HIS A 5 UNP Q9R257 CLONING ARTIFACT SEQADV 2GOV HIS A 6 UNP Q9R257 CLONING ARTIFACT
SEQRES 1 A 195 MET LYS GLN SER THR HIS HIS HIS HIS HIS HIS ASN SER SEQRES 2 A 195 LEU PHE GLY SER VAL GLU THR TRP PRO TRP GLN VAL LEU SEQRES 3 A 195 SER THR GLY GLY LYS GLU ASP VAL SER TYR GLU GLU ARG SEQRES 4 A 195 ALA CYS GLU GLY GLY LYS PHE ALA THR VAL GLU VAL THR SEQRES 5 A 195 ASP LYS PRO VAL ASP GLU ALA LEU ARG GLU ALA MET PRO SEQRES 6 A 195 LYS ILE MET LYS TYR VAL GLY GLY THR ASN ASP LYS GLY SEQRES 7 A 195 VAL GLY MET GLY MET THR VAL PRO VAL SER PHE ALA VAL SEQRES 8 A 195 PHE PRO ASN GLU ASP GLY SER LEU GLN LYS LYS LEU LYS SEQRES 9 A 195 VAL TRP PHE ARG ILE PRO ASN GLN PHE GLN GLY SER PRO SEQRES 10 A 195 PRO ALA PRO SER ASP GLU SER VAL LYS ILE GLU GLU ARG SEQRES 11 A 195 GLU GLY ILE THR VAL TYR SER THR GLN PHE GLY GLY TYR SEQRES 12 A 195 ALA LYS GLU ALA ASP TYR VAL ALA HIS ALA THR GLN LEU SEQRES 13 A 195 ARG THR THR LEU GLU GLY THR PRO ALA THR TYR GLN GLY SEQRES 14 A 195 ASP VAL TYR TYR CYS ALA GLY TYR ASP PRO PRO MET LYS SEQRES 15 A 195 PRO TYR GLY ARG ARG ASN GLU VAL TRP LEU VAL LYS ALA
HELIX 1 1 PRO A 50 GLY A 68 1 19 HELIX 2 2 PRO A 105 SER A 111 1 7 HELIX 3 3 LYS A 140 LEU A 155 1 16
SHEET 1 A 9 GLN A 19 THR A 23 0 SHEET 2 A 9 TYR A 31 ALA A 35 -1 O GLU A 33 N LEU A 21 SHEET 3 A 9 THR A 129 GLY A 136 -1 O VAL A 130 N ARG A 34 SHEET 4 A 9 ARG A 182 LYS A 189 -1 O LEU A 187 N TYR A 131 SHEET 5 A 9 TYR A 162 GLY A 171 -1 N ALA A 170 O GLU A 184 SHEET 6 A 9 VAL A 82 PRO A 88 -1 N VAL A 82 O GLY A 171 SHEET 7 A 9 LEU A 94 PHE A 102 -1 O GLN A 95 N PHE A 87 SHEET 8 A 9 LYS A 40 THR A 47 -1 N VAL A 44 O VAL A 100 SHEET 9 A 9 LYS A 121 GLU A 124 -1 O GLU A 123 N PHE A 41
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000