10 20 30 40 50 60 70 80 2GOS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 14-APR-06 2GOS
TITLE S1 SUBUNIT MODEL OF H120 STRAIN OF IBV CORONAVIRUS S1 TITLE 2 PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN H120) COMPND 3 PEPLOMERIC PROTEIN GENE ENCODING THE S1 AND S2 SUBUNITS, COMPND 4 PRECURSOR; COMPND 5 CHAIN: A; COMPND 6 SYNONYM: SPIKE GLYCOPROTEIN S1
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFECTIOUS BRONCHITIS VIRUS; SOURCE 3 STRAIN: H120
KEYWDS H120 STRAIN, S PROTEIN, CORONAVIRS, SUBUNIT, GLYCOPROTEIN
EXPDTA THEORETICAL MODEL
AUTHOR C.VELOSO,J.T.ABREU,J.S.RESENDE,R.B.FLATSCHART,A.FLATSCHART, AUTHOR 2 S.NOGUEIRA JR.,M.M.SANTORO
REVDAT 1 10-APR-07 2GOS 0
JRNL AUTH C.VELOSO,J.T.ABREU,J.S.RESENDE,R.B.FLATSCHART, JRNL AUTH 2 A.FLATSCHART,S.NOGUEIRA JR.,M.M.SANTORO JRNL TITL MOLECULAR MODELLING OF S1 SUBUNITS OF SPIKE JRNL TITL 2 GLYCOPROTEIN OF THREE VACINAL STRAINS OF IBV JRNL TITL 3 CORONAVIRUS JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELLER 8.1, NAMD 2.6.1B REMARK 3 AUTHORS : SALI, A., POTTERTON, L., YUAN, F., VAN VLIJMEN, REMARK 3 H., KARPLUS, M. (MODELLER), PHILLIPS, J.C., REMARK 3 BRAUN, R., WANG, W., GUMBART, J., TAJKHORSHID, REMARK 3 E., VILLA, E., CHIPOT, C., SKEEL, R.D., KALE, REMARK 3 L., SCHULTEN, K. (NAMD) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2GOS COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS FILE IS A TEST VERSION. REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.100 (2007-04-06)
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-APR-2006. REMARK 100 THE RCSB ID CODE IS RCSB037374.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 26 -93.75 -175.14 REMARK 500 TRP A 40 149.14 69.22 REMARK 500 ARG A 132 -106.32 88.56 REMARK 500 VAL A 161 -90.33 78.67 REMARK 500 SER A 224 144.65 90.94 REMARK 500 ASN A 247 -72.48 71.68 REMARK 500 PHE A 267 -113.44 61.64 REMARK 500 PHE A 274 -127.57 94.47 REMARK 500 GLU A 277 -111.88 63.30 REMARK 500 ALA A 280 -86.60 99.47 REMARK 500 GLN A 288 -104.31 78.68 REMARK 500 TYR A 302 -90.88 80.61 REMARK 500 TYR A 303 -62.35 99.45 REMARK 500 PHE A 305 -82.10 64.99 REMARK 500 GLN A 355 -105.33 64.13 REMARK 500 LEU A 379 -59.39 84.47 REMARK 500 LEU A 380 -37.96 71.52 REMARK 500 HIS A 391 -61.94 85.85 REMARK 500 THR A 411 -91.19 54.05 REMARK 500 THR A 449 157.50 76.38 REMARK 500 TYR A 485 -91.68 72.17 REMARK 500 TYR A 486 -61.00 60.61 REMARK 500 GLN A 523 -46.39 87.01 REMARK 500 TYR A 525 -65.46 66.82 REMARK 500 THR A 529 131.86 64.46 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 3 THR A 4 -145.54 REMARK 500 ARG A 35 PRO A 36 -36.33
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GOR RELATED DB: PDB REMARK 900 THE SAME SUBUNIT FROM THE OTHER STRAIN OF IBV CORONAVIRUS REMARK 900 S1 PROTEIN REMARK 900 RELATED ID: 2GOQ RELATED DB: PDB REMARK 900 THE SAME SUBUNIT FROM THE OTHER STRAIN OF IBV CORONAVIRUS REMARK 900 S1 PROTEIN
DBREF 2GOS A 1 537 UNP Q66187 Q66187_9CORO 1 537
SEQRES 1 A 537 MET LEU VAL THR PRO LEU LEU LEU VAL THR LEU LEU CYS SEQRES 2 A 537 ALA LEU CYS SER ALA ALA LEU TYR ASP SER SER SER TYR SEQRES 3 A 537 VAL TYR TYR TYR GLN SER ALA PHE ARG PRO PRO ASP GLY SEQRES 4 A 537 TRP HIS LEU HIS GLY GLY ALA TYR ALA VAL VAL ASN ILE SEQRES 5 A 537 SER SER GLU SER ASN ASN ALA GLY SER SER SER GLY CYS SEQRES 6 A 537 THR VAL GLY ILE ILE HIS GLY GLY ARG VAL VAL ASN ALA SEQRES 7 A 537 SER SER ILE ALA MET THR ALA PRO SER SER GLY MET ALA SEQRES 8 A 537 TRP SER SER SER GLN PHE CYS THR ALA TYR CYS ASN PHE SEQRES 9 A 537 SER ASP THR THR VAL PHE VAL THR HIS CYS TYR LYS HIS SEQRES 10 A 537 VAL GLY CYS PRO ILE THR GLY MET LEU GLN GLN HIS SER SEQRES 11 A 537 ILE ARG VAL SER ALA MET LYS ASN GLY GLN LEU PHE TYR SEQRES 12 A 537 ASN LEU THR VAL SER VAL ALA LYS TYR PRO THR PHE LYS SEQRES 13 A 537 SER PHE GLN CYS VAL ASN ASN LEU THR SER VAL TYR LEU SEQRES 14 A 537 ASN GLY ASP LEU VAL TYR THR SER ASN GLU THR THR ASP SEQRES 15 A 537 VAL THR SER ALA GLY VAL TYR PHE LYS ALA GLY GLY PRO SEQRES 16 A 537 ILE THR TYR LYS VAL MET ARG GLU VAL ARG ALA LEU ALA SEQRES 17 A 537 TYR PHE VAL ASN GLY THR ALA GLN ASP VAL ILE LEU CYS SEQRES 18 A 537 ASP GLY SER PRO ARG GLY LEU LEU ALA CYS GLN TYR ASN SEQRES 19 A 537 THR GLY ASN PHE SER ASP GLY PHE TYR PRO PHE THR ASN SEQRES 20 A 537 SER SER LEU VAL LYS GLN LYS PHE ILE VAL TYR ARG GLU SEQRES 21 A 537 ASN SER VAL ASN THR THR PHE THR LEU HIS ASN PHE THR SEQRES 22 A 537 PHE HIS ASN GLU THR GLY ALA ASN PRO ASN PRO SER GLY SEQRES 23 A 537 VAL GLN ASN ILE GLN THR TYR GLN THR GLN THR ALA GLN SEQRES 24 A 537 SER GLY TYR TYR ASN PHE ASN PHE SER PHE LEU SER SER SEQRES 25 A 537 PHE VAL TYR LYS GLU SER ASN PHE MET TYR GLY SER TYR SEQRES 26 A 537 HIS PRO SER CYS ASN PHE ARG LEU GLU THR ILE ASN ASN SEQRES 27 A 537 GLY LEU TRP PHE ASN SER LEU SER VAL SER ILE ALA TYR SEQRES 28 A 537 GLY PRO LEU GLN GLY GLY CYS LYS GLN SER VAL PHE SER SEQRES 29 A 537 GLY ARG ALA THR CYS CYS TYR ALA TYR SER TYR GLY GLY SEQRES 30 A 537 PRO LEU LEU CYS LYS GLY VAL TYR SER GLY GLU LEU ASP SEQRES 31 A 537 HIS ASN PHE GLU CYS GLY LEU LEU VAL TYR VAL THR LYS SEQRES 32 A 537 SER GLY GLY SER ARG ILE GLN THR ALA THR GLU PRO PRO SEQRES 33 A 537 VAL ILE THR GLN HIS ASN TYR ASN ASN ILE THR LEU ASN SEQRES 34 A 537 THR CYS VAL ASP TYR ASN ILE TYR GLY ARG THR GLY GLN SEQRES 35 A 537 GLY PHE ILE THR ASN VAL THR ASP SER ALA VAL SER TYR SEQRES 36 A 537 ASN TYR LEU ALA ASP ALA GLY LEU ALA ILE LEU ASP THR SEQRES 37 A 537 SER GLY SER ILE ASP ILE PHE VAL VAL GLN SER GLU TYR SEQRES 38 A 537 GLY LEU ASN TYR TYR LYS VAL ASN PRO CYS GLU ASP VAL SEQRES 39 A 537 ASN GLN GLN PHE VAL VAL SER GLY GLY LYS LEU VAL GLY SEQRES 40 A 537 ILE LEU THR SER ARG ASN GLU THR GLY SER GLN LEU LEU SEQRES 41 A 537 GLU ASN GLN PHE TYR ILE LYS ILE THR ASN GLY THR ARG SEQRES 42 A 537 ARG PHE ARG ARG
HELIX 1 1 ASN A 58 SER A 63 1 6
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000