2GOF - Header Asymmetric Unit

HEADER VIRAL PROTEIN 12-APR-06 2GOF

TITLE THREE-DIMENSIONAL STRUCTURE OF THE TRANS-MEMBRANE DOMAIN OF TITLE 2 VPU FROM HIV-1 IN ALIGNED PHOSPHOLIPID BICELLES

COMPND MOL_ID: 1; COMPND 2 MOLECULE: VPU PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRANS-MEMBRANE DOMAIN, RESIDUES 2-30; COMPND 5 SYNONYM: U ORF PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: VPU; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET31-B(+)

KEYWDS SINGLE TRANS-MEMBRANE HELIX, BICELLE, MAGNETIC ALIGNMENT, KEYWDS 2 VIRAL PROTEIN

EXPDTA SOLUTION NMR

NUMMDL 21

MDLTYP MINIMIZED AVERAGE

AUTHOR S.H.PARK,A.A.DE ANGELIS,A.A.NEVZOROV,C.H.WU,S.J.OPELLA

REVDAT 3 24-FEB-09 2GOF 1 VERSN REVDAT 2 10-OCT-06 2GOF 1 JRNL REVDAT 1 08-AUG-06 2GOF 0

JRNL AUTH S.H.PARK,A.A.DE ANGELIS,A.A.NEVZOROV,C.H.WU, JRNL AUTH 2 S.J.OPELLA JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THE TRANSMEMBRANE JRNL TITL 2 DOMAIN OF VPU FROM HIV-1 IN ALIGNED PHOSPHOLIPID JRNL TITL 3 BICELLES. JRNL REF BIOPHYS.J. V. 91 3032 2006 JRNL REFN ISSN 0006-3495 JRNL PMID 16861273 JRNL DOI 10.1529/BIOPHYSJ.106.087106

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : STRUCTURAL FITTING REMARK 3 AUTHORS : NEVZOROV, A.A. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ORIENTATIONAL FREQUENICES (15N REMARK 3 CHEMICAL SHIFT AND 15N-1H DIPOLAR COUPLING) FOR EACH AMIDE REMARK 3 SITE WERE USED.

REMARK 4 REMARK 4 2GOF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037361.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 15N-UNIFORMLY OR SELECTIVELY REMARK 210 PEPTIDE ALIGNED IN 16C BICELLES (1,2-DI-O-TETRADECYL-SN- REMARK 210 GLYCERO-3-PHOSPHOCHOLINE (14-O-PC) / 1,2-DI-O-HEXYL-SN-GLYCERO REMARK 210 -3-PHOSPHOCHOLINE (6-O-PC) = 3.0, 28% W/V), 100% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : PISEMA REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : STRUCTURAL FITTING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : FIRST 20 STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-21 REMARK 465 RES C SSSEQI REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 ILE A 4 REMARK 465 GLN A 5 REMARK 465 ILE A 6 REMARK 465 ILE A 26 REMARK 465 ILE A 27 REMARK 465 GLU A 28 REMARK 465 GLY A 29 REMARK 465 ARG A 30 REMARK 465 GLY A 31 REMARK 465 GLY A 32 REMARK 465 LYS A 33 REMARK 465 LYS A 34 REMARK 465 LYS A 35 REMARK 465 LYS A 36

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GOH RELATED DB: PDB REMARK 900 THREE-DIMENSIONAL STRUCTURE OF THE TRANS-MEMBRANE DOMAIN OF REMARK 900 VPU FROM HIV-1 IN ALIGNED PHOSPHOLIPID BICELLES

DBREF 2GOF A 2 30 UNP Q70625 VPU_HV1LW 2 30

SEQADV 2GOF GLY A 29 UNP Q70625 TYR 29 ENGINEERED SEQADV 2GOF GLY A 31 UNP Q70625 CLONING ARTIFACT SEQADV 2GOF GLY A 32 UNP Q70625 CLONING ARTIFACT SEQADV 2GOF LYS A 33 UNP Q70625 CLONING ARTIFACT SEQADV 2GOF LYS A 34 UNP Q70625 CLONING ARTIFACT SEQADV 2GOF LYS A 35 UNP Q70625 CLONING ARTIFACT SEQADV 2GOF LYS A 36 UNP Q70625 CLONING ARTIFACT

SEQRES 1 A 35 GLN PRO ILE GLN ILE ALA ILE VAL ALA LEU VAL VAL ALA SEQRES 2 A 35 ILE ILE ILE ALA ILE VAL VAL TRP SER ILE VAL ILE ILE SEQRES 3 A 35 GLU GLY ARG GLY GLY LYS LYS LYS LYS

HELIX 1 1 ALA A 7 VAL A 25 1 19

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000