10 20 30 40 50 60 70 80 2GMO - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 07-APR-06 2GMO
TITLE NMR-STRUCTURE OF AN INDEPENDENTLY FOLDED C-TERMINAL DOMAIN TITLE 2 OF INFLUENZA POLYMERASE SUBUNIT PB2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE BASIC PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PB2 C-TERMINAL 678-759 FRAGMENT; COMPND 5 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P3; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/VICTORIA/3/1975(H3N2)); SOURCE 4 ORGANISM_TAXID: 392809; SOURCE 5 STRAIN: A/VICTORIA/3/75(H3N2); SOURCE 6 GENE: PB2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PTRIEX
KEYWDS COMPACT BETA-STRUCTURE, VIRAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR J.BOUDET,F.TARENDEAU,D.GUILLIGAY,P.MAS,C.M.BOUGAULT, AUTHOR 2 S.CUSACK,J.-P.SIMORRE,D.J.HART
REVDAT 3 24-FEB-09 2GMO 1 VERSN REVDAT 2 13-MAR-07 2GMO 1 JRNL REVDAT 1 27-FEB-07 2GMO 0
JRNL AUTH F.TARENDEAU,J.BOUDET,D.GUILLIGAY,P.J.MAS, JRNL AUTH 2 C.M.BOUGAULT,S.BOULO,F.BAUDIN,R.W.RUIGROK,N.DAIGLE, JRNL AUTH 3 J.ELLENBERG,S.CUSACK,J.P.SIMORRE,D.J.HART JRNL TITL STRUCTURE AND NUCLEAR IMPORT FUNCTION OF THE JRNL TITL 2 C-TERMINAL DOMAIN OF INFLUENZA VIRUS POLYMERASE JRNL TITL 3 PB2 SUBUNIT. JRNL REF NAT.STRUCT.MOL.BIOL. V. 14 229 2007 JRNL REFN ISSN 1545-9993 JRNL PMID 17310249 JRNL DOI 10.1038/NSMB1212
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS CNS_SOLVE_1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STARTING FROM EXTENDED CONFORMATION, REMARK 3 1000 STRUCTURES CALCULATED WITH CNS USING DISTANCE AND REMARK 3 DIHEDRAL RESTRAINTS FROM NOE DATA AND TALOS, HYDROGEN BONDS REMARK 3 ADDED FROM EXCHANGE EXPERIMENT
REMARK 4 REMARK 4 2GMO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037302.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 200 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM TRIS BUFFER PH 7.5, 200 REMARK 210 MM NACL, 1 MM EDTA, 0.01% REMARK 210 NAN3, 90% H2O, 10% D2O; 50 MM REMARK 210 TRIS BUFFER PH 7.5, 200 MM REMARK 210 NACL, 1 MM EDTA, 0.01% NAN3, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N-NOESY-HSQC, 3D 13C- REMARK 210 NOESY-HSQC, 3D METHYL- REMARK 210 SELECTIVE 13C-NOESY-HSQC, REMARK 210 HNHA, 2D HOMONUCLEAR NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS CNS_SOLVE_1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : 10 STRUCTURES OF LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 677 REMARK 465 ASP A 678 REMARK 465 PRO A 679 REMARK 465 ASP A 680 REMARK 465 GLU A 681 REMARK 465 SER A 682 REMARK 465 THR A 683 REMARK 465 SER A 684
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 697 -96.53 -89.81 REMARK 500 1 PRO A 706 -66.85 -92.32 REMARK 500 1 ALA A 722 127.34 -172.39 REMARK 500 1 LYS A 736 -178.61 -60.40 REMARK 500 1 ARG A 739 -72.48 -173.64 REMARK 500 1 LEU A 744 101.36 64.14 REMARK 500 2 LEU A 697 -96.43 -83.47 REMARK 500 2 PRO A 706 -64.02 -91.65 REMARK 500 2 LEU A 708 -167.21 -76.72 REMARK 500 2 ALA A 722 126.61 -172.08 REMARK 500 2 ARG A 739 -75.77 -169.26 REMARK 500 2 LEU A 744 -13.75 71.64 REMARK 500 2 ASP A 746 -74.39 -142.77 REMARK 500 2 ALA A 750 -82.33 -78.76 REMARK 500 2 THR A 751 -17.06 68.67 REMARK 500 2 ILE A 754 152.41 -42.47 REMARK 500 3 LEU A 691 -82.84 -55.87 REMARK 500 3 ARG A 692 -62.75 -179.73 REMARK 500 3 LEU A 697 -92.60 -80.42 REMARK 500 3 PRO A 706 -73.84 -90.87 REMARK 500 3 ALA A 707 100.42 58.90 REMARK 500 3 ARG A 739 -19.69 -174.03 REMARK 500 3 ASP A 740 -175.77 -68.46 REMARK 500 3 SER A 742 -78.46 68.79 REMARK 500 3 LEU A 744 -81.08 69.13 REMARK 500 3 ASP A 746 -18.47 -141.35 REMARK 500 3 ARG A 753 144.29 65.46 REMARK 500 3 ILE A 754 156.45 -46.51 REMARK 500 3 ARG A 755 32.84 -88.00 REMARK 500 3 ALA A 757 -167.58 -71.21 REMARK 500 3 ILE A 758 -33.16 -132.85 REMARK 500 4 LEU A 697 -96.02 -102.66 REMARK 500 4 PRO A 706 -69.58 -90.60 REMARK 500 4 ALA A 707 82.57 54.84 REMARK 500 4 GLN A 728 36.31 -158.99 REMARK 500 4 ASP A 740 179.72 61.89 REMARK 500 4 SER A 741 106.36 62.78 REMARK 500 4 LEU A 744 85.32 60.79 REMARK 500 4 ARG A 753 169.73 173.41 REMARK 500 5 LEU A 697 -96.40 -83.53 REMARK 500 5 LYS A 699 64.56 -103.13 REMARK 500 5 ARG A 702 -7.40 -59.20 REMARK 500 5 PRO A 706 -68.54 -92.98 REMARK 500 5 GLN A 728 92.65 56.21 REMARK 500 5 LYS A 736 -175.42 -68.55 REMARK 500 5 LYS A 738 -32.47 71.94 REMARK 500 5 ARG A 739 -58.24 -177.78 REMARK 500 5 ASP A 746 -35.01 -161.89 REMARK 500 6 ARG A 692 99.87 61.08 REMARK 500 6 LEU A 697 -98.91 -87.06 REMARK 500 6 PRO A 706 -71.49 -90.84 REMARK 500 6 ALA A 707 92.56 60.30 REMARK 500 6 LEU A 716 -175.55 -60.40 REMARK 500 6 ALA A 722 126.50 -173.78 REMARK 500 6 ARG A 737 142.60 -36.87 REMARK 500 6 SER A 742 -38.78 75.01 REMARK 500 6 LEU A 744 -84.16 64.50 REMARK 500 6 THR A 745 -177.31 -61.41 REMARK 500 6 ASP A 746 -9.67 -157.63 REMARK 500 6 ARG A 753 144.91 66.68 REMARK 500 7 ARG A 692 94.61 46.15 REMARK 500 7 LEU A 697 -92.97 -89.07 REMARK 500 7 LYS A 699 68.76 -100.08 REMARK 500 7 PRO A 706 -73.03 -90.40 REMARK 500 7 ALA A 707 96.25 59.54 REMARK 500 7 ALA A 722 126.56 -170.41 REMARK 500 7 GLN A 728 19.02 -173.66 REMARK 500 7 LYS A 736 47.32 -96.33 REMARK 500 7 ARG A 737 -159.11 39.75 REMARK 500 7 LYS A 738 -19.69 -170.04 REMARK 500 7 ARG A 739 163.94 177.16 REMARK 500 7 ASP A 740 84.57 54.78 REMARK 500 7 SER A 742 -43.64 -149.28 REMARK 500 7 LEU A 744 70.85 61.78 REMARK 500 7 ASP A 746 -76.78 -135.67 REMARK 500 8 VAL A 686 -83.03 55.33 REMARK 500 8 ARG A 692 81.84 54.83 REMARK 500 8 LEU A 697 -94.27 -85.53 REMARK 500 8 LYS A 699 68.91 -100.27 REMARK 500 8 PRO A 706 -64.26 -92.51 REMARK 500 8 LEU A 708 -166.60 -77.78 REMARK 500 8 ARG A 739 -73.02 -176.37 REMARK 500 8 SER A 741 -175.98 -173.01 REMARK 500 8 SER A 742 -32.54 -147.55 REMARK 500 8 ASP A 746 -82.40 -143.37 REMARK 500 8 ALA A 757 -178.18 -64.35 REMARK 500 8 ILE A 758 -74.38 -80.28 REMARK 500 9 ARG A 692 73.90 59.07 REMARK 500 9 LEU A 697 -98.01 -85.93 REMARK 500 9 LYS A 699 65.31 -103.78 REMARK 500 9 PRO A 706 -71.60 -92.18 REMARK 500 9 LYS A 736 179.60 -56.04 REMARK 500 9 LYS A 738 -34.31 76.39 REMARK 500 9 ARG A 739 145.77 -170.94 REMARK 500 9 ASP A 740 155.31 66.46 REMARK 500 9 SER A 742 -39.56 -161.45 REMARK 500 9 ILE A 743 -15.57 -177.29 REMARK 500 9 ASP A 746 -13.22 -151.20 REMARK 500 9 THR A 749 -163.31 -65.38 REMARK 500 9 ARG A 753 145.23 65.78 REMARK 500 10 VAL A 686 -19.77 68.71 REMARK 500 10 LEU A 691 -100.93 -59.62 REMARK 500 10 ARG A 692 82.92 179.84 REMARK 500 10 LEU A 697 -96.38 -91.00 REMARK 500 10 LYS A 699 70.37 -100.01 REMARK 500 10 PRO A 706 -73.21 -91.00 REMARK 500 10 ALA A 707 95.57 57.62 REMARK 500 10 GLN A 728 27.13 -167.30 REMARK 500 10 ARG A 739 -77.48 -170.36 REMARK 500 10 THR A 745 158.19 62.68 REMARK 500 10 ASP A 746 -69.39 -95.26 REMARK 500 10 SER A 747 92.75 47.41 REMARK 500 10 ALA A 750 88.63 -150.33 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JDQ RELATED DB: PDB REMARK 900 C-TERMINAL DOMAIN OF INFLUENZA A VIRUS POLYMERASE PB2 REMARK 900 SUBUNIT IN COMPLEX WITH HUMAN IMPORTIN ALPHA5.
DBREF 2GMO A 678 759 UNP P31345 PB2_IAVI7 678 759
SEQADV 2GMO GLY A 677 UNP P31345 CLONING ARTIFACT
SEQRES 1 A 83 GLY ASP PRO ASP GLU SER THR SER GLY VAL GLU SER ALA SEQRES 2 A 83 VAL LEU ARG GLY PHE LEU ILE LEU GLY LYS GLU ASP ARG SEQRES 3 A 83 ARG TYR GLY PRO ALA LEU SER ILE ASN GLU LEU SER ASN SEQRES 4 A 83 LEU ALA LYS GLY GLU LYS ALA ASN VAL LEU ILE GLY GLN SEQRES 5 A 83 GLY ASP VAL VAL LEU VAL MET LYS ARG LYS ARG ASP SER SEQRES 6 A 83 SER ILE LEU THR ASP SER GLN THR ALA THR LYS ARG ILE SEQRES 7 A 83 ARG MET ALA ILE ASN
HELIX 1 1 GLY A 685 ARG A 692 1 8 HELIX 2 2 ASP A 701 GLY A 705 5 5 HELIX 3 3 SER A 709 SER A 714 1 6
SHEET 1 A 3 LEU A 695 GLY A 698 0 SHEET 2 A 3 VAL A 731 MET A 735 -1 O LEU A 733 N GLY A 698 SHEET 3 A 3 LYS A 721 LEU A 725 -1 N VAL A 724 O VAL A 732
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000