10 20 30 40 50 60 70 80 2GLH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HORMONE/GROWTH FACTOR 04-APR-06 2GLH
TITLE SOLUTION CONFORMATION OF SALMON CALCITONIN IN SODIUM TITLE 2 DODECYL SULFATE MICELLES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCITONIN-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: PEPTIDE SYNTHESIS
KEYWDS A-HELIX, HORMONE/GROWTH FACTOR COMPLEX
EXPDTA SOLUTION NMR
NUMMDL 100
AUTHOR G.ANDREOTTI,B.LOPEZ-MENDEZ,P.AMODEO,M.A.MORELLI,H.NAKAMUTA, AUTHOR 2 A.MOTTA
REVDAT 3 24-FEB-09 2GLH 1 VERSN REVDAT 2 05-SEP-06 2GLH 1 JRNL REVDAT 1 20-JUN-06 2GLH 0
JRNL AUTH G.ANDREOTTI,B.L.MENDEZ,P.AMODEO,M.A.MORELLI, JRNL AUTH 2 H.NAKAMUTA,A.MOTTA JRNL TITL STRUCTURAL DETERMINANTS OF SALMON CALCITONIN JRNL TITL 2 BIOACTIVITY: THE ROLE OF THE LEU-BASED AMPHIPATHIC JRNL TITL 3 ALPHA-HELIX. JRNL REF J.BIOL.CHEM. V. 281 24193 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16766525 JRNL DOI 10.1074/JBC.M603528200
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.AMODEO,A.MOTTA,G.STRAZZULLO, REMARK 1 AUTH 2 M.A.CASTIGLIONE-MORELLI REMARK 1 TITL CONFORMATIONAL FLEXIBILITY IN CALCITONIN: THE REMARK 1 TITL 2 DYNAMIC PROPERTIES OF HUMAN AND SALMON CALCITONIN REMARK 1 TITL 3 IN SOLUTION REMARK 1 REF J.BIOMOL.NMR V. 13 161 1999 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1008365322148 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.MOTTA,A.PASTORE,N.A.GOUD,M.A.CASTIGLIONE-MORELLI REMARK 1 TITL SOLUTION CONFORMATION OF SALMON CALCITONIN IN REMARK 1 TITL 2 SODIUM DODECYL SULFATE MICELLES AS DETERMINED BY REMARK 1 TITL 3 TWO-DIMENSIONAL NMR AND DISTANCE GEOMETRY REMARK 1 TITL 4 CALCULATIONS REMARK 1 REF BIOCHEMISTRY V. 30 10444 1991 REMARK 1 REFN ISSN 0006-2960
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 6.0 REMARK 3 AUTHORS : PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON, REMARK 3 SEIBEL,SINGH,WEINER,KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2GLH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037266.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310; 310 REMARK 210 PH : 4.1; 7.2 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 5 MM SCT; 20 MM PHOSPHATE REMARK 210 BUFFER; 600 MM SDS; 95% H2O, REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, AURELIA, AMBER 6.0 REMARK 210 METHOD USED : RESTRAINED SIMULATED REMARK 210 ANNEALING/ENERGY MINIMIZATION REMARK 210 FOLLOWED BY UNRESTRAINED REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 100 REMARK 210 CONFORMERS, SELECTION CRITERIA : PERIODICALLY SAMPLED REMARK 210 UNRESTRAINED MOLECULAR REMARK 210 DYNAMICS STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 7 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 8 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 13 TYR A 22 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 14 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 18 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 19 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 20 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 21 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 41 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 44 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 45 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 46 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 54 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 67 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 78 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 85 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 87 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 93 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 100 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -75.84 -118.03 REMARK 500 1 LEU A 4 -76.91 -32.76 REMARK 500 1 THR A 25 113.75 166.70 REMARK 500 1 SER A 29 48.13 -154.05 REMARK 500 2 LEU A 4 -73.76 -38.23 REMARK 500 2 THR A 25 132.46 149.83 REMARK 500 2 SER A 29 18.69 -61.80 REMARK 500 4 ASN A 26 -30.60 -147.39 REMARK 500 5 SER A 2 -60.31 -100.38 REMARK 500 5 PRO A 23 3.79 -64.30 REMARK 500 5 THR A 25 143.14 -177.94 REMARK 500 5 ASN A 26 -45.39 -148.18 REMARK 500 6 SER A 2 -80.43 -99.73 REMARK 500 6 TYR A 22 -56.53 -29.67 REMARK 500 6 ASN A 26 -47.84 -149.48 REMARK 500 7 SER A 2 -77.56 -91.06 REMARK 500 7 TYR A 22 -70.14 -25.82 REMARK 500 7 PRO A 23 1.55 -60.80 REMARK 500 7 THR A 25 136.13 -171.16 REMARK 500 7 ASN A 26 -12.26 -141.90 REMARK 500 7 SER A 29 101.35 -59.33 REMARK 500 8 SER A 2 -79.78 -102.92 REMARK 500 8 TYR A 22 -69.83 -23.51 REMARK 500 8 PRO A 23 -7.44 -56.95 REMARK 500 8 THR A 25 146.50 -173.05 REMARK 500 8 ASN A 26 -44.69 -146.55 REMARK 500 9 LEU A 4 -77.11 -31.66 REMARK 500 9 TYR A 22 -65.32 -23.81 REMARK 500 9 ASN A 26 -14.23 -152.13 REMARK 500 9 THR A 27 -58.48 -134.13 REMARK 500 10 ASN A 26 -36.10 -149.68 REMARK 500 11 SER A 2 -95.57 -129.26 REMARK 500 11 THR A 25 110.54 -167.48 REMARK 500 11 THR A 27 -1.91 -149.85 REMARK 500 12 ARG A 24 -37.39 -137.06 REMARK 500 12 THR A 25 125.80 -178.17 REMARK 500 12 THR A 27 -41.52 -150.22 REMARK 500 13 ARG A 24 -37.85 -140.69 REMARK 500 13 THR A 25 98.87 172.55 REMARK 500 13 THR A 27 -60.25 -144.90 REMARK 500 14 SER A 2 -91.98 -111.21 REMARK 500 14 ARG A 24 -57.19 -125.36 REMARK 500 14 THR A 25 90.27 -171.44 REMARK 500 15 PRO A 23 4.54 -64.16 REMARK 500 15 ARG A 24 -35.14 -137.67 REMARK 500 15 THR A 25 98.63 155.31 REMARK 500 16 PRO A 23 7.06 -64.84 REMARK 500 16 ARG A 24 -37.14 -141.07 REMARK 500 16 THR A 25 98.45 163.21 REMARK 500 17 PRO A 23 0.19 -65.74 REMARK 500 17 THR A 25 102.90 164.77 REMARK 500 18 PRO A 23 12.25 -66.84 REMARK 500 18 ARG A 24 -34.01 -140.00 REMARK 500 18 THR A 25 97.13 156.09 REMARK 500 19 PRO A 23 0.88 -63.07 REMARK 500 19 ARG A 24 -32.16 -134.88 REMARK 500 19 THR A 25 131.32 158.91 REMARK 500 20 PRO A 23 4.17 -61.17 REMARK 500 20 ARG A 24 -43.05 -145.03 REMARK 500 20 ASN A 26 -11.74 -141.74 REMARK 500 21 SER A 2 -50.86 -123.16 REMARK 500 21 ARG A 24 -39.06 -137.27 REMARK 500 23 SER A 2 -60.83 -100.59 REMARK 500 23 THR A 25 136.28 -170.29 REMARK 500 24 SER A 2 -70.88 -109.34 REMARK 500 24 THR A 25 132.70 -175.81 REMARK 500 25 SER A 2 -59.74 -121.16 REMARK 500 25 PRO A 23 3.32 -64.46 REMARK 500 25 ARG A 24 -32.61 -135.98 REMARK 500 26 SER A 2 -65.79 -129.17 REMARK 500 26 THR A 25 105.01 -169.51 REMARK 500 27 SER A 29 90.61 -59.52 REMARK 500 30 THR A 25 84.06 -161.39 REMARK 500 31 THR A 25 113.73 -166.58 REMARK 500 32 SER A 2 -74.69 -84.77 REMARK 500 34 SER A 2 -71.88 -81.48 REMARK 500 34 ASN A 26 -38.90 -131.30 REMARK 500 35 SER A 2 -83.09 -95.24 REMARK 500 35 ASN A 26 -46.63 -130.23 REMARK 500 36 SER A 2 -85.98 -113.19 REMARK 500 37 SER A 2 -68.30 -128.02 REMARK 500 38 SER A 2 -70.05 -139.91 REMARK 500 39 SER A 2 -72.52 -142.10 REMARK 500 40 SER A 2 -70.59 -141.73 REMARK 500 41 SER A 2 -65.58 -126.97 REMARK 500 41 THR A 25 128.08 -174.21 REMARK 500 42 THR A 25 98.71 -166.93 REMARK 500 44 ARG A 24 -52.67 -132.55 REMARK 500 45 SER A 2 -68.77 -129.90 REMARK 500 46 PRO A 23 4.07 -68.96 REMARK 500 47 SER A 2 -70.75 -127.34 REMARK 500 48 SER A 2 -78.88 -128.04 REMARK 500 48 SER A 29 76.37 -154.75 REMARK 500 51 SER A 2 -56.18 -130.38 REMARK 500 53 SER A 2 -58.56 -127.45 REMARK 500 55 SER A 2 -67.05 -128.19 REMARK 500 57 ARG A 24 -32.92 -134.96 REMARK 500 58 SER A 2 -88.26 -136.42 REMARK 500 58 THR A 25 111.51 -160.16 REMARK 500 59 SER A 2 -70.95 -132.09 REMARK 500 59 PRO A 23 -9.01 -58.45 REMARK 500 60 SER A 29 116.39 -160.22 REMARK 500 61 SER A 29 109.86 -160.15 REMARK 500 62 SER A 2 -67.25 -128.30 REMARK 500 64 ARG A 24 -31.38 -136.44 REMARK 500 65 PRO A 23 3.32 -61.27 REMARK 500 65 ARG A 24 -29.17 -141.59 REMARK 500 67 SER A 2 -72.68 -131.68 REMARK 500 67 THR A 25 119.36 -163.47 REMARK 500 68 SER A 2 -64.33 -95.57 REMARK 500 69 THR A 25 88.29 -152.13 REMARK 500 70 THR A 25 109.32 -160.24 REMARK 500 73 SER A 2 -76.65 -106.62 REMARK 500 73 THR A 25 108.56 -162.25 REMARK 500 75 SER A 2 -62.74 -120.44 REMARK 500 76 SER A 29 90.61 -66.39 REMARK 500 79 ARG A 24 -34.06 -131.84 REMARK 500 85 SER A 2 -78.77 -133.40 REMARK 500 85 SER A 29 86.84 -157.02 REMARK 500 86 SER A 2 -54.63 -134.19 REMARK 500 87 SER A 2 -57.32 -125.97 REMARK 500 87 LEU A 4 -60.36 -28.05 REMARK 500 89 PRO A 23 -9.08 -58.94 REMARK 500 90 SER A 2 -82.63 -116.06 REMARK 500 91 SER A 2 -67.58 -125.97 REMARK 500 91 PRO A 23 -7.22 -59.96 REMARK 500 92 SER A 2 -61.94 -129.22 REMARK 500 93 SER A 2 -64.24 -134.23 REMARK 500 94 SER A 2 -69.16 -124.23 REMARK 500 94 PRO A 23 -9.85 -57.78 REMARK 500 95 THR A 25 118.91 -165.38 REMARK 500 97 SER A 2 -65.73 -93.93 REMARK 500 97 PRO A 23 3.99 -68.79 REMARK 500 97 ARG A 24 -37.40 -133.09 REMARK 500 98 SER A 2 -74.75 -139.74 REMARK 500 99 SER A 2 -67.47 -120.21 REMARK 500 100 SER A 2 -64.12 -123.64 REMARK 500 100 ARG A 24 -31.24 -130.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 11 TYR A 22 0.07 SIDE_CHAIN REMARK 500 31 TYR A 22 0.07 SIDE_CHAIN REMARK 500 58 TYR A 22 0.07 SIDE_CHAIN REMARK 500 66 TYR A 22 0.06 SIDE_CHAIN REMARK 500 77 ARG A 24 0.09 SIDE_CHAIN REMARK 500 95 ARG A 24 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 33
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GLG RELATED DB: PDB REMARK 900 [L23,A24]-SALMON CALCITONIN MUTANT
DBREF 2GLH A 1 32 UNP P01263 CALC1_ONCKE 83 114
SEQRES 1 A 33 CYS SER ASN LEU SER THR CYS VAL LEU GLY LYS LEU SER SEQRES 2 A 33 GLN GLU LEU HIS LYS LEU GLN THR TYR PRO ARG THR ASN SEQRES 3 A 33 THR GLY SER GLY THR PRO NH2
HET NH2 A 33 3
HETNAM NH2 AMINO GROUP
FORMUL 1 NH2 H2 N
HELIX 1 1 ASN A 3 TYR A 22 1 20
SSBOND 1 CYS A 1 CYS A 7 1555 1555 2.04
LINK C PRO A 32 N NH2 A 33 1555 1555 1.33
SITE 1 AC1 1 PRO A 32
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000