2GIP - Header Asymmetric Unit

HEADER RNA 29-MAR-06 2GIP

TITLE SOLUTION STRUCTURE OF A PORTION OF THE 5'UTR OF HSPA MRNA TITLE 2 FROM BRADYRHIZOBIUM JANPONICUM HAVING DELETED G83

COMPND MOL_ID: 1; COMPND 2 MOLECULE: 28-MER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: DELG83 MICROROSE RNA

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE SEQUENCE FOR THIS RNA NATURALLY OCCURS SOURCE 4 IN BRADYRHIZOBIUM JAPONICUM.

KEYWDS A FORM RNA HELIX

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR S.CHOWDHURY,C.MARIS,F.H.ALLAIN,F.NARBERHAUS

REVDAT 2 24-FEB-09 2GIP 1 VERSN REVDAT 1 20-JUN-06 2GIP 0

JRNL AUTH S.CHOWDHURY,C.MARIS,F.H.ALLAIN,F.NARBERHAUS JRNL TITL MOLECULAR BASIS FOR TEMPERATURE SENSING BY AN RNA JRNL TITL 2 THERMOMETER. JRNL REF EMBO J. V. 25 2487 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 16710302 JRNL DOI 10.1038/SJ.EMBOJ.7601128

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7 REMARK 3 AUTHORS : DAVID CASE ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 20 STRUCTURES

REMARK 4 REMARK 4 2GIP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037167.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 30MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : RNA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D-NOESY-13CHSQC, 2D-NOESY, REMARK 210 2D-HSQC, TOCSY, HCCHTOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA REMARK 210 METHOD USED : NMR REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.1 DEGREES REMARK 500 2 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 3 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 4 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 5 U A 14 C5' - C4' - C3' ANGL. DEV. = -9.4 DEGREES REMARK 500 5 G A 16 O4' - C1' - N9 ANGL. DEV. = 7.0 DEGREES REMARK 500 6 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES REMARK 500 7 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES REMARK 500 8 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 9 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 10 U A 14 C5' - C4' - C3' ANGL. DEV. = -9.4 DEGREES REMARK 500 10 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.8 DEGREES REMARK 500 11 U A 14 C5' - C4' - C3' ANGL. DEV. = -9.5 DEGREES REMARK 500 11 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.8 DEGREES REMARK 500 12 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES REMARK 500 13 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 14 U A 14 C5' - C4' - C3' ANGL. DEV. = -9.5 DEGREES REMARK 500 14 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.7 DEGREES REMARK 500 15 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 16 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 17 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES REMARK 500 18 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 19 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.1 DEGREES REMARK 500 20 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL

DBREF 2GIP A 1 28 PDB 2GIP 2GIP 1 28

SEQRES 1 A 28 G G C C A U C U U C U C U SEQRES 2 A 28 U C G G A G G A U U U G G SEQRES 3 A 28 C C

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000