10 20 30 40 50 60 70 80 2GIH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE/DNA 28-MAR-06 2GIH
TITLE Q138F HINCII BOUND TO COGNATE DNA GTCGAC AND CA2+
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*GP*C)- COMPND 3 3'; COMPND 4 CHAIN: E, F; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TYPE II RESTRICTION ENZYME HINCII; COMPND 8 CHAIN: A, B; COMPND 9 SYNONYM: ENDONUCLEASE HINCII, R.HINCII; COMPND 10 EC: 3.1.21.4; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 5 ORGANISM_TAXID: 727; SOURCE 6 GENE: HINCIIR; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ER2393; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCCR101HINCII.R
KEYWDS PROTEIN DNA COMPLEX, INDIRECT READOUT, DNA INTERCALATION, KEYWDS 2 ENDONUCLEASE, HYDROLASE/DNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR N.C.HORTON,H.K.JOSHI,C.ETZKORN,L.CHATWELL,J.BITINAITE
REVDAT 4 24-FEB-09 2GIH 1 VERSN REVDAT 3 27-MAR-07 2GIH 1 TITLE COMPND SOURCE DBREF REVDAT 3 2 1 SEQADV REVDAT 2 29-AUG-06 2GIH 1 JRNL REVDAT 1 18-JUL-06 2GIH 0
JRNL AUTH H.K.JOSHI,C.ETZKORN,L.CHATWELL,J.BITINAITE, JRNL AUTH 2 N.C.HORTON JRNL TITL ALTERATION OF SEQUENCE SPECIFICITY OF THE TYPE II JRNL TITL 2 RESTRICTION ENDONUCLEASE HINCII THROUGH AN JRNL TITL 3 INDIRECT READOUT MECHANISM. JRNL REF J.BIOL.CHEM. V. 281 23852 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16675462 JRNL DOI 10.1074/JBC.M512339200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 21318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 5% REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1086 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4102 REMARK 3 NUCLEIC ACID ATOMS : 568 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 363 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.33 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2GIH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037159.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : 180 FRAMES, 1 DEGREE REMARK 200 OSCILLATION, 25 SEC PER FRAME REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BLU-ICE REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28688 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 38.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4K, 0.15 M NACL, 0.1 HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X+1/2,Z+1/4 REMARK 290 3555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -Y+1/2,X,Z+3/4 REMARK 290 7555 -X,-Y,Z REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 1.000000 0.000000 0.000000 63.93050 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.31575 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 63.93050 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 63.93050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.63150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.93050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.94725 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 63.93050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.93050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.63150 REMARK 290 SMTRY1 6 0.000000 -1.000000 0.000000 63.93050 REMARK 290 SMTRY2 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.94725 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 63.93050 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 20.31575 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A PROTEIN DIMER AND SINGLE REMARK 300 DUPLEX OF DNA. THE ASYMMETRIC UNIT IS THE BIOLOGICAL ASSEMBLY.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 23 REMARK 465 LYS B 24 REMARK 465 SER B 25 REMARK 465 GLY B 26 REMARK 465 THR B 27 REMARK 465 LEU B 28
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 9 CG CD OE1 NE2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 SER A 50 OG REMARK 470 ASP A 120 CG OD1 OD2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 LEU A 258 CG CD1 CD2 REMARK 470 GLN B 9 CB CG CD OE1 NE2 REMARK 470 ASP B 10 CG OD1 OD2 REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 HIS B 31 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 GLN B 121 CG CD OE1 NE2 REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 GLN B 240 CG CD OE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 407 O HOH A 407 7655 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 55 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 27 -160.65 -70.67 REMARK 500 LEU A 28 8.37 -160.10 REMARK 500 LEU A 49 40.35 -140.47 REMARK 500 ASN A 67 60.52 -117.65 REMARK 500 SER A 82 124.03 -179.19 REMARK 500 LYS A 135 -85.05 -96.87 REMARK 500 SER A 136 105.71 -8.33 REMARK 500 ASP A 162 24.17 -145.49 REMARK 500 VAL A 212 -42.50 98.43 REMARK 500 VAL A 250 -69.78 -103.23 REMARK 500 GLN B 9 -41.23 107.94 REMARK 500 ASN B 67 58.37 -146.73 REMARK 500 LEU B 104 138.41 59.20 REMARK 500 LYS B 119 110.70 -167.90 REMARK 500 GLN B 121 14.70 58.33 REMARK 500 ASP B 162 31.28 -148.80 REMARK 500 GLU B 178 43.53 -160.06 REMARK 500 SER B 196 -9.58 -56.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC E 7 0.06 SIDE_CHAIN REMARK 500 DG E 8 0.05 SIDE_CHAIN REMARK 500 DA F 9 0.06 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH F 340 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH B 443 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B 449 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B 451 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A 488 DISTANCE = 8.79 ANGSTROMS REMARK 525 HOH B 502 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH B 521 DISTANCE = 5.63 ANGSTROMS REMARK 525 HOH B 538 DISTANCE = 5.98 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 114 OD2 REMARK 620 2 ASP A 127 OD2 79.6 REMARK 620 3 HOH F 365 O 127.7 75.3 REMARK 620 4 VAL A 128 O 107.1 96.0 120.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 127 OD1 REMARK 620 2 VAL B 128 O 81.6 REMARK 620 3 ASP B 114 OD1 117.4 131.8 REMARK 620 4 ASP B 114 OD2 95.2 98.1 40.4 REMARK 620 5 DG E 8 OP1 99.8 160.3 65.1 101.3 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 401 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GIG RELATED DB: PDB REMARK 900 Q138F HINCII BOUND TO COGNATE DNA GTCGAC REMARK 900 RELATED ID: 1TX3 RELATED DB: PDB REMARK 900 WILD TYPE HINCII BOUND TO COGNATE DNA GTCGAC REMARK 900 RELATED ID: 2GIE RELATED DB: PDB REMARK 900 RELATED ID: 2GII RELATED DB: PDB REMARK 900 RELATED ID: 2GIJ RELATED DB: PDB
DBREF 2GIH A 2 258 UNP P17743 T2C2_HAEIN 2 258 DBREF 2GIH B 2 258 UNP P17743 T2C2_HAEIN 2 258 DBREF 2GIH E 1 14 PDB 2GIH 2GIH 1 14 DBREF 2GIH F 1 14 PDB 2GIH 2GIH 1 14
SEQADV 2GIH THR A 130 UNP P17743 ARG 130 CONFLICT SEQADV 2GIH PHE A 138 UNP P17743 GLN 138 ENGINEERED SEQADV 2GIH TRP A 173 UNP P17743 SER 173 CONFLICT SEQADV 2GIH THR B 130 UNP P17743 ARG 130 CONFLICT SEQADV 2GIH PHE B 138 UNP P17743 GLN 138 ENGINEERED SEQADV 2GIH TRP B 173 UNP P17743 SER 173 CONFLICT
SEQRES 1 E 14 DG DC DC DG DG DT DC DG DA DC DC DG DG SEQRES 2 E 14 DC SEQRES 1 F 14 DG DC DC DG DG DT DC DG DA DC DC DG DG SEQRES 2 F 14 DC SEQRES 1 A 257 SER PHE ILE LYS PRO ILE TYR GLN ASP ILE ASN SER ILE SEQRES 2 A 257 LEU ILE GLY GLN LYS VAL LYS ARG PRO LYS SER GLY THR SEQRES 3 A 257 LEU SER GLY HIS ALA ALA GLY GLU PRO PHE GLU LYS LEU SEQRES 4 A 257 VAL TYR LYS PHE LEU LYS GLU ASN LEU SER ASP LEU THR SEQRES 5 A 257 PHE LYS GLN TYR GLU TYR LEU ASN ASP LEU PHE MET LYS SEQRES 6 A 257 ASN PRO ALA ILE ILE GLY HIS GLU ALA ARG TYR LYS LEU SEQRES 7 A 257 PHE ASN SER PRO THR LEU LEU PHE LEU LEU SER ARG GLY SEQRES 8 A 257 LYS ALA ALA THR GLU ASN TRP SER ILE GLU ASN LEU PHE SEQRES 9 A 257 GLU GLU LYS GLN ASN ASP THR ALA ASP ILE LEU LEU VAL SEQRES 10 A 257 LYS ASP GLN PHE TYR GLU LEU LEU ASP VAL LYS THR ARG SEQRES 11 A 257 ASN ILE SER LYS SER ALA PHE ALA PRO ASN ILE ILE SER SEQRES 12 A 257 ALA TYR LYS LEU ALA GLN THR CYS ALA LYS MET ILE ASP SEQRES 13 A 257 ASN LYS GLU PHE ASP LEU PHE ASP ILE ASN TYR LEU GLU SEQRES 14 A 257 VAL ASP TRP GLU LEU ASN GLY GLU ASP LEU VAL CYS VAL SEQRES 15 A 257 SER THR SER PHE ALA GLU LEU PHE LYS SER GLU PRO SER SEQRES 16 A 257 GLU LEU TYR ILE ASN TRP ALA ALA ALA MET GLN ILE GLN SEQRES 17 A 257 PHE HIS VAL ARG ASP LEU ASP GLN GLY PHE ASN GLY THR SEQRES 18 A 257 ARG GLU GLU TRP ALA LYS SER TYR LEU LYS HIS PHE VAL SEQRES 19 A 257 THR GLN ALA GLU GLN ARG ALA ILE SER MET ILE ASP LYS SEQRES 20 A 257 PHE VAL LYS PRO PHE LYS LYS TYR ILE LEU SEQRES 1 B 257 SER PHE ILE LYS PRO ILE TYR GLN ASP ILE ASN SER ILE SEQRES 2 B 257 LEU ILE GLY GLN LYS VAL LYS ARG PRO LYS SER GLY THR SEQRES 3 B 257 LEU SER GLY HIS ALA ALA GLY GLU PRO PHE GLU LYS LEU SEQRES 4 B 257 VAL TYR LYS PHE LEU LYS GLU ASN LEU SER ASP LEU THR SEQRES 5 B 257 PHE LYS GLN TYR GLU TYR LEU ASN ASP LEU PHE MET LYS SEQRES 6 B 257 ASN PRO ALA ILE ILE GLY HIS GLU ALA ARG TYR LYS LEU SEQRES 7 B 257 PHE ASN SER PRO THR LEU LEU PHE LEU LEU SER ARG GLY SEQRES 8 B 257 LYS ALA ALA THR GLU ASN TRP SER ILE GLU ASN LEU PHE SEQRES 9 B 257 GLU GLU LYS GLN ASN ASP THR ALA ASP ILE LEU LEU VAL SEQRES 10 B 257 LYS ASP GLN PHE TYR GLU LEU LEU ASP VAL LYS THR ARG SEQRES 11 B 257 ASN ILE SER LYS SER ALA PHE ALA PRO ASN ILE ILE SER SEQRES 12 B 257 ALA TYR LYS LEU ALA GLN THR CYS ALA LYS MET ILE ASP SEQRES 13 B 257 ASN LYS GLU PHE ASP LEU PHE ASP ILE ASN TYR LEU GLU SEQRES 14 B 257 VAL ASP TRP GLU LEU ASN GLY GLU ASP LEU VAL CYS VAL SEQRES 15 B 257 SER THR SER PHE ALA GLU LEU PHE LYS SER GLU PRO SER SEQRES 16 B 257 GLU LEU TYR ILE ASN TRP ALA ALA ALA MET GLN ILE GLN SEQRES 17 B 257 PHE HIS VAL ARG ASP LEU ASP GLN GLY PHE ASN GLY THR SEQRES 18 B 257 ARG GLU GLU TRP ALA LYS SER TYR LEU LYS HIS PHE VAL SEQRES 19 B 257 THR GLN ALA GLU GLN ARG ALA ILE SER MET ILE ASP LYS SEQRES 20 B 257 PHE VAL LYS PRO PHE LYS LYS TYR ILE LEU
HET CA B 401 1 HET CA A 402 1
HETNAM CA CALCIUM ION
FORMUL 5 CA 2(CA 2+) FORMUL 7 HOH *363(H2 O)
HELIX 1 1 ILE A 4 PRO A 6 5 3 HELIX 2 2 ILE A 7 ILE A 14 1 8 HELIX 3 3 GLY A 34 LEU A 49 1 16 HELIX 4 4 GLN A 56 ASN A 67 1 12 HELIX 5 5 GLY A 72 TYR A 77 1 6 HELIX 6 6 LYS A 78 ASN A 81 5 4 HELIX 7 7 SER A 82 SER A 90 1 9 HELIX 8 8 GLY A 92 TRP A 99 1 8 HELIX 9 9 ALA A 145 ASN A 158 1 14 HELIX 10 10 PHE A 191 SER A 193 5 3 HELIX 11 11 GLU A 194 LEU A 198 5 5 HELIX 12 12 THR A 222 VAL A 250 1 29 HELIX 13 13 PHE A 253 LEU A 258 1 6 HELIX 14 14 PHE B 3 TYR B 8 1 6 HELIX 15 15 ASP B 10 ILE B 16 1 7 HELIX 16 16 GLU B 35 LEU B 49 1 15 HELIX 17 17 GLN B 56 LYS B 66 1 11 HELIX 18 18 GLY B 72 LEU B 79 1 8 HELIX 19 19 SER B 82 SER B 90 1 9 HELIX 20 20 GLY B 92 TRP B 99 1 8 HELIX 21 21 ALA B 145 LYS B 159 1 15 HELIX 22 22 PHE B 191 SER B 193 5 3 HELIX 23 23 GLU B 194 LEU B 198 5 5 HELIX 24 24 HIS B 211 LEU B 215 5 5 HELIX 25 25 THR B 222 VAL B 250 1 29 HELIX 26 26 LYS B 251 LYS B 254 5 4
SHEET 1 A 6 LYS A 19 LYS A 21 0 SHEET 2 A 6 ASP A 179 GLU A 189 -1 O LEU A 180 N VAL A 20 SHEET 3 A 6 PHE A 164 ASN A 176 -1 N GLU A 174 O VAL A 181 SHEET 4 A 6 PHE A 122 ASN A 132 1 N ARG A 131 O TRP A 173 SHEET 5 A 6 ILE A 115 LYS A 119 -1 N ILE A 115 O LEU A 126 SHEET 6 A 6 THR A 53 LYS A 55 -1 N PHE A 54 O LEU A 116 SHEET 1 B 3 ASN A 141 SER A 144 0 SHEET 2 B 3 GLN A 207 GLN A 209 -1 O ILE A 208 N ILE A 142 SHEET 3 B 3 ILE A 200 ASN A 201 -1 N ASN A 201 O GLN A 207 SHEET 1 C 6 LYS B 19 VAL B 20 0 SHEET 2 C 6 LEU B 180 GLU B 189 -1 O LEU B 180 N VAL B 20 SHEET 3 C 6 PHE B 164 LEU B 175 -1 N GLU B 174 O VAL B 181 SHEET 4 C 6 TYR B 123 ASN B 132 1 N LYS B 129 O LEU B 169 SHEET 5 C 6 ILE B 115 VAL B 118 -1 N ILE B 115 O LEU B 126 SHEET 6 C 6 THR B 53 LYS B 55 -1 N PHE B 54 O LEU B 116 SHEET 1 D 3 ASN B 141 SER B 144 0 SHEET 2 D 3 GLN B 207 GLN B 209 -1 O ILE B 208 N ILE B 143 SHEET 3 D 3 ILE B 200 ASN B 201 -1 N ASN B 201 O GLN B 207
LINK CA CA A 402 OD2 ASP A 114 1555 1555 2.20 LINK CA CA A 402 OD2 ASP A 127 1555 1555 2.51 LINK CA CA A 402 O HOH F 365 1555 1555 2.33 LINK CA CA A 402 O VAL A 128 1555 1555 2.82 LINK CA CA B 401 OD1 ASP B 127 1555 1555 2.62 LINK CA CA B 401 O VAL B 128 1555 1555 2.53 LINK CA CA B 401 OD1 ASP B 114 1555 1555 3.35 LINK CA CA B 401 OD2 ASP B 114 1555 1555 2.20 LINK CA CA B 401 OP1 DG E 8 1555 1555 2.39
SITE 1 AC1 4 ASP B 114 ASP B 127 VAL B 128 DG E 8 SITE 1 AC2 4 ASP A 114 ASP A 127 VAL A 128 HOH F 365
CRYST1 127.861 127.861 81.263 90.00 90.00 90.00 I 41 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007821 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007821 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012306 0.00000