10 20 30 40 50 60 70 80 2GG1 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 23-MAR-06 2GG1
TITLE NMR SOLUTION STRUCTURE OF DOMAIN III OF THE E-PROTEIN OF TITLE 2 TICK-BORNE LANGAT FLAVIVIRUS (INCLUDES RDC RESTRAINTS)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN III, MAJOR ENVELOPE PROTEIN E; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LANGAT VIRUS; SOURCE 3 ORGANISM_TAXID: 11085; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-DE3 CODON PLUS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: HIS-MBP-T
KEYWDS VIRAL PROTEIN, NMR, DOMAIN III
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.MUKHERJEE,K.DUTTA,M.A.WHITE,D.COWBURN,R.O.FOX
REVDAT 3 24-FEB-09 2GG1 1 VERSN REVDAT 2 13-JUN-06 2GG1 1 JRNL REVDAT 1 25-APR-06 2GG1 0
SPRSDE 25-APR-06 2GG1 1YZO
JRNL AUTH M.MUKHERJEE,K.DUTTA,M.A.WHITE,D.COWBURN,R.O.FOX JRNL TITL NMR SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF JRNL TITL 2 DOMAIN III OF THE E PROTEIN OF TICK-BORNE LANGAT JRNL TITL 3 FLAVIVIRUS SUGGESTS A POTENTIAL SITE FOR MOLECULAR JRNL TITL 4 RECOGNITION. JRNL REF PROTEIN SCI. V. 15 1342 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16731969 JRNL DOI 10.1110/PS.051844006
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : ALEX BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2GG1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB037071.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 10MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7MM LANGAT E-PROTEIN DOMAIN REMARK 210 III, U-15N,13C, 20MM BIS-TRIS, REMARK 210 10MM NACL, 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, HNHA, REMARK 210 HNCO-J REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ, 600 MHZ, 500 MHZ, REMARK 210 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.2 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 294 REMARK 465 SER A 295 REMARK 465 GLU A 296 REMARK 465 PHE A 297 REMARK 465 GLY A 298 REMARK 465 SER A 299 REMARK 465 LYS A 300 REMARK 465 GLY A 301 REMARK 465 LEU A 302
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 305 -166.83 172.22 REMARK 500 1 LYS A 309 -18.52 -44.85 REMARK 500 1 ASP A 324 53.74 86.86 REMARK 500 1 PRO A 337 96.96 -23.99 REMARK 500 1 GLU A 365 -166.13 -120.42 REMARK 500 1 PRO A 377 126.49 -28.07 REMARK 500 1 PRO A 378 134.03 -35.12 REMARK 500 1 HIS A 390 116.93 -174.83 REMARK 500 1 TRP A 392 115.27 -179.49 REMARK 500 2 THR A 305 -173.91 -179.90 REMARK 500 2 LYS A 309 -12.17 -46.12 REMARK 500 2 HIS A 323 46.46 -106.42 REMARK 500 2 PRO A 337 98.26 -26.64 REMARK 500 2 MET A 356 51.96 -97.46 REMARK 500 2 LEU A 357 111.59 -24.53 REMARK 500 2 PRO A 360 45.34 -82.17 REMARK 500 2 ASN A 361 80.44 -174.58 REMARK 500 2 GLN A 375 -173.81 -173.50 REMARK 500 2 PRO A 378 140.04 -37.80 REMARK 500 2 HIS A 390 123.19 -175.03 REMARK 500 3 THR A 305 -168.33 174.90 REMARK 500 3 PRO A 318 112.70 -39.71 REMARK 500 3 HIS A 323 53.09 -111.86 REMARK 500 3 PRO A 337 96.74 -26.63 REMARK 500 3 PRO A 350 49.70 -76.15 REMARK 500 3 VAL A 352 106.31 -169.80 REMARK 500 3 PRO A 360 36.86 -83.87 REMARK 500 3 ASN A 361 71.56 -153.35 REMARK 500 3 ASN A 366 -7.82 -54.05 REMARK 500 3 GLN A 375 175.00 177.54 REMARK 500 3 HIS A 390 116.38 -173.41 REMARK 500 4 THR A 305 -169.17 173.10 REMARK 500 4 LYS A 309 -29.71 -38.47 REMARK 500 4 PRO A 337 96.06 -24.35 REMARK 500 4 GLU A 365 -163.29 -121.71 REMARK 500 4 PRO A 377 125.79 -24.97 REMARK 500 4 PRO A 378 134.42 -35.51 REMARK 500 4 HIS A 390 116.34 -173.49 REMARK 500 5 THR A 305 -176.75 -179.85 REMARK 500 5 LYS A 309 -28.94 -38.59 REMARK 500 5 PRO A 318 108.87 -36.87 REMARK 500 5 PRO A 337 98.36 -31.70 REMARK 500 5 HIS A 347 75.50 30.37 REMARK 500 5 PRO A 360 34.60 -81.83 REMARK 500 5 ASN A 361 70.68 -151.63 REMARK 500 5 GLU A 365 -168.50 -125.64 REMARK 500 5 PRO A 377 129.63 -33.89 REMARK 500 5 PRO A 378 138.85 -34.03 REMARK 500 5 HIS A 390 119.50 -175.56 REMARK 500 6 THR A 305 -167.18 173.02 REMARK 500 6 ALA A 317 154.77 -41.49 REMARK 500 6 PRO A 318 114.17 -38.17 REMARK 500 6 HIS A 323 47.77 -102.33 REMARK 500 6 PRO A 337 96.90 -24.07 REMARK 500 6 PRO A 360 41.10 -88.61 REMARK 500 6 ASN A 361 72.48 -161.83 REMARK 500 6 GLU A 365 -163.39 -126.52 REMARK 500 6 PRO A 377 131.00 -28.95 REMARK 500 6 PRO A 378 138.21 -35.56 REMARK 500 6 HIS A 390 113.74 -173.74 REMARK 500 7 THR A 305 -172.32 177.38 REMARK 500 7 LYS A 309 -17.74 -47.90 REMARK 500 7 HIS A 323 44.60 -95.87 REMARK 500 7 PRO A 337 91.04 -23.26 REMARK 500 7 ASN A 361 65.66 -156.90 REMARK 500 7 GLU A 365 -167.66 -117.16 REMARK 500 7 ASN A 366 -6.83 -59.39 REMARK 500 7 GLN A 375 -179.90 -177.32 REMARK 500 7 PRO A 378 141.12 -35.07 REMARK 500 7 HIS A 390 120.98 -174.55 REMARK 500 8 THR A 305 -170.58 175.79 REMARK 500 8 LYS A 309 -30.65 -37.72 REMARK 500 8 PRO A 318 116.05 -37.64 REMARK 500 8 ASP A 324 13.89 144.37 REMARK 500 8 SER A 333 44.48 -151.96 REMARK 500 8 PRO A 337 104.34 -27.65 REMARK 500 8 ASN A 361 68.34 -166.52 REMARK 500 8 GLU A 365 -169.62 -117.52 REMARK 500 8 GLN A 375 175.45 179.83 REMARK 500 8 PRO A 378 144.22 -35.47 REMARK 500 8 HIS A 390 120.45 -173.91 REMARK 500 9 THR A 305 -166.75 170.75 REMARK 500 9 LYS A 309 -17.53 -45.28 REMARK 500 9 PRO A 318 113.24 -34.27 REMARK 500 9 ASP A 324 35.39 108.00 REMARK 500 9 PRO A 337 99.41 -26.89 REMARK 500 9 HIS A 347 73.17 33.62 REMARK 500 9 ASN A 361 52.88 -145.77 REMARK 500 9 GLN A 375 -175.95 -176.14 REMARK 500 9 PRO A 377 130.99 -39.65 REMARK 500 9 PRO A 378 141.32 -37.20 REMARK 500 9 HIS A 390 118.55 -173.48 REMARK 500 10 THR A 305 -167.89 178.54 REMARK 500 10 LYS A 309 -13.13 -44.64 REMARK 500 10 HIS A 323 50.15 -112.20 REMARK 500 10 PRO A 337 100.88 -27.56 REMARK 500 10 ASN A 361 55.00 -148.59 REMARK 500 10 GLU A 365 -164.51 -124.42 REMARK 500 10 GLN A 375 176.00 175.93 REMARK 500 10 HIS A 390 117.83 -174.75 REMARK 500 11 THR A 305 -169.83 172.82 REMARK 500 11 LYS A 311 43.85 -90.36 REMARK 500 11 ALA A 317 152.07 -41.91 REMARK 500 11 ASP A 324 49.66 72.33 REMARK 500 11 PRO A 337 95.88 -26.67 REMARK 500 11 VAL A 352 110.58 -170.72 REMARK 500 11 PRO A 360 34.42 -85.83 REMARK 500 11 PRO A 378 139.84 -35.74 REMARK 500 11 HIS A 390 122.33 -172.62 REMARK 500 12 THR A 305 -167.67 176.23 REMARK 500 12 PRO A 337 98.35 -26.46 REMARK 500 12 PRO A 360 39.89 -89.05 REMARK 500 12 ASN A 361 72.78 -156.85 REMARK 500 12 GLU A 365 -166.76 -126.82 REMARK 500 12 PRO A 378 140.75 -35.80 REMARK 500 12 HIS A 390 108.61 -169.42 REMARK 500 13 THR A 305 -167.68 172.50 REMARK 500 13 LYS A 311 48.56 -84.87 REMARK 500 13 ASP A 324 45.94 92.69 REMARK 500 13 SER A 333 49.37 -148.66 REMARK 500 13 PRO A 337 103.14 -24.79 REMARK 500 13 HIS A 347 71.11 35.79 REMARK 500 13 PRO A 360 38.93 -83.60 REMARK 500 13 GLU A 365 -163.74 -103.13 REMARK 500 13 GLN A 375 179.08 177.97 REMARK 500 13 PRO A 378 138.86 -37.03 REMARK 500 13 VAL A 385 77.15 -118.48 REMARK 500 13 HIS A 390 112.12 -171.46 REMARK 500 14 THR A 305 -167.13 178.45 REMARK 500 14 LYS A 309 -13.61 -44.02 REMARK 500 14 HIS A 323 49.20 -109.05 REMARK 500 14 PRO A 337 98.46 -25.25 REMARK 500 14 PRO A 360 39.90 -85.01 REMARK 500 14 ASN A 361 70.74 -158.40 REMARK 500 14 ASN A 366 -9.38 -49.38 REMARK 500 14 PRO A 378 139.65 -35.46 REMARK 500 14 HIS A 390 117.70 -175.88 REMARK 500 15 THR A 305 -170.68 174.46 REMARK 500 15 LYS A 309 -15.87 -48.20 REMARK 500 15 PRO A 337 101.62 -25.96 REMARK 500 15 ASN A 361 57.60 -149.65 REMARK 500 15 ASN A 366 -6.29 -51.48 REMARK 500 15 PRO A 377 130.82 -26.73 REMARK 500 15 PRO A 378 133.51 -35.46 REMARK 500 15 HIS A 390 116.10 -172.26 REMARK 500 16 THR A 305 -167.03 173.55 REMARK 500 16 LYS A 309 -29.62 -38.45 REMARK 500 16 PRO A 318 108.66 -45.59 REMARK 500 16 PRO A 337 97.25 -26.28 REMARK 500 16 HIS A 347 71.47 34.70 REMARK 500 16 ASN A 361 50.92 -145.23 REMARK 500 16 ASN A 366 -5.59 -49.16 REMARK 500 16 GLN A 375 177.81 172.52 REMARK 500 16 PRO A 378 147.08 -36.79 REMARK 500 16 HIS A 390 119.43 -173.62 REMARK 500 16 TRP A 392 137.79 -173.16 REMARK 500 17 THR A 305 -170.72 175.86 REMARK 500 17 LYS A 311 47.63 -99.46 REMARK 500 17 PRO A 318 111.76 -37.56 REMARK 500 17 ASP A 324 43.99 84.76 REMARK 500 17 SER A 333 -70.92 -65.54 REMARK 500 17 PRO A 337 105.64 -28.28 REMARK 500 17 PRO A 360 37.32 -90.79 REMARK 500 17 GLU A 365 -167.54 -116.75 REMARK 500 17 ASN A 366 -6.04 -56.68 REMARK 500 17 GLN A 375 175.08 179.55 REMARK 500 17 PRO A 377 134.27 -36.53 REMARK 500 17 PRO A 378 135.82 -33.86 REMARK 500 17 HIS A 390 116.39 -174.11 REMARK 500 18 THR A 305 -169.24 172.38 REMARK 500 18 LYS A 309 -38.13 -37.95 REMARK 500 18 ALA A 317 154.88 -44.68 REMARK 500 18 PRO A 318 112.27 -38.67 REMARK 500 18 HIS A 323 43.58 -104.61 REMARK 500 18 SER A 333 -66.66 -100.98 REMARK 500 18 PRO A 337 98.58 -27.27 REMARK 500 18 HIS A 347 74.46 32.47 REMARK 500 18 VAL A 352 104.96 -170.09 REMARK 500 18 PRO A 360 34.58 -84.19 REMARK 500 18 GLU A 365 -167.42 -117.38 REMARK 500 18 PRO A 377 119.60 -26.92 REMARK 500 18 PRO A 378 139.02 -37.09 REMARK 500 18 HIS A 390 115.65 -172.95 REMARK 500 19 THR A 305 -167.98 175.57 REMARK 500 19 LYS A 309 -28.78 -38.76 REMARK 500 19 LYS A 311 43.26 -88.46 REMARK 500 19 ASP A 324 53.49 71.85 REMARK 500 19 PRO A 337 100.30 -26.12 REMARK 500 19 PRO A 341 82.67 -69.68 REMARK 500 19 PRO A 360 35.75 -83.74 REMARK 500 19 GLU A 365 -164.99 -113.08 REMARK 500 19 ASN A 366 -5.59 -56.55 REMARK 500 19 PRO A 377 135.22 -34.30 REMARK 500 19 PRO A 378 138.61 -35.59 REMARK 500 19 HIS A 390 117.17 -173.65 REMARK 500 20 THR A 305 -166.88 171.88 REMARK 500 20 ASP A 308 109.17 -57.07 REMARK 500 20 HIS A 323 52.24 -110.62 REMARK 500 20 SER A 333 49.26 -147.34 REMARK 500 20 PRO A 337 101.03 -23.39 REMARK 500 20 HIS A 347 69.86 38.46 REMARK 500 20 ASN A 361 68.75 -155.83 REMARK 500 20 PRO A 377 129.58 -27.88 REMARK 500 20 PRO A 378 134.47 -33.77 REMARK 500 20 HIS A 390 106.81 -170.42 REMARK 500 20 TRP A 392 116.28 -178.00 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6800 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT ASSIGNMENTS FOR LANGAT DOMAIN III REMARK 900 RELATED ID: 1Z66 RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF LANGAT DOMAIN III (WITHOUT RDC REMARK 900 RESTRAINTS) REMARK 900 RELATED ID: 1SVB RELATED DB: NDB REMARK 900 ENVELOPE GLYCOPROTEIN FROM TICK-BORNE ENCEPHALITIS VIRUS
DBREF 2GG1 A 300 395 UNP P29838 POLG_LANVY 580 675
SEQADV 2GG1 GLY A 294 UNP P29838 CLONING ARTIFACT SEQADV 2GG1 SER A 295 UNP P29838 CLONING ARTIFACT SEQADV 2GG1 GLU A 296 UNP P29838 CLONING ARTIFACT SEQADV 2GG1 PHE A 297 UNP P29838 CLONING ARTIFACT SEQADV 2GG1 GLY A 298 UNP P29838 CLONING ARTIFACT SEQADV 2GG1 SER A 299 UNP P29838 CLONING ARTIFACT
SEQRES 1 A 102 GLY SER GLU PHE GLY SER LYS GLY LEU THR TYR THR VAL SEQRES 2 A 102 CYS ASP LYS THR LYS PHE THR TRP LYS ARG ALA PRO THR SEQRES 3 A 102 ASP SER GLY HIS ASP THR VAL VAL MET GLU VAL GLY PHE SEQRES 4 A 102 SER GLY THR ARG PRO CYS ARG ILE PRO VAL ARG ALA VAL SEQRES 5 A 102 ALA HIS GLY VAL PRO GLU VAL ASN VAL ALA MET LEU ILE SEQRES 6 A 102 THR PRO ASN PRO THR MET GLU ASN ASN GLY GLY GLY PHE SEQRES 7 A 102 ILE GLU MET GLN LEU PRO PRO GLY ASP ASN ILE ILE TYR SEQRES 8 A 102 VAL GLY ASP LEU ASN HIS GLN TRP PHE GLN LYS
SHEET 1 A 3 THR A 313 ASP A 320 0 SHEET 2 A 3 VAL A 326 GLY A 331 -1 O VAL A 327 N THR A 319 SHEET 3 A 3 GLY A 370 MET A 374 -1 O GLY A 370 N VAL A 330 SHEET 1 B 4 VAL A 349 ASN A 353 0 SHEET 2 B 4 VAL A 342 ALA A 346 -1 N ALA A 346 O VAL A 349 SHEET 3 B 4 GLY A 379 VAL A 385 -1 O TYR A 384 N ARG A 343 SHEET 4 B 4 HIS A 390 GLN A 394 -1 O TRP A 392 N ASN A 381
SSBOND 1 CYS A 307 CYS A 338 1555 1555 2.04
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000