2GG0 - Header Asymmetric Unit

HEADER HYDROLASE 23-MAR-06 2GG0

TITLE NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS

COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP, PEPTIDASE M; COMPND 5 EC: 3.4.11.18; COMPND 6 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: MAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28

KEYWDS METHIONINE AMINO PEPTIDASE, PITA-BREAD FOLD, MAP INHIBITOR, KEYWDS 2 ANTIBACTERIAL, HYDROLASE

EXPDTA X-RAY DIFFRACTION

AUTHOR A.G.EVDOKIMOV,M.E.POKROSS,R.L.WALTER,M.MEKEL

REVDAT 3 24-FEB-09 2GG0 1 VERSN REVDAT 2 24-APR-07 2GG0 1 JRNL REVDAT 1 13-JUN-06 2GG0 0

JRNL AUTH A.G.EVDOKIMOV,M.POKROSS,R.L.WALTER,M.MEKEL, JRNL AUTH 2 B.L.BARNETT,J.AMBURGEY,W.L.SEIBEL,S.J.SOPER, JRNL AUTH 3 J.F.DJUNG,N.FAIRWEATHER,C.DIVEN,V.RASTOGI, JRNL AUTH 4 L.GRINIUS,C.KLANKE,R.SIEHNEL,T.TWINEM,R.ANDREWS, JRNL AUTH 5 A.CURNOW JRNL TITL SERENDIPITOUS DISCOVERY OF NOVEL BACTERIAL JRNL TITL 2 METHIONINE AMINOPEPTIDASE INHIBITORS. JRNL REF PROTEINS V. 66 538 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17120228 JRNL DOI 10.1002/PROT.21207

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 57560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2909 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2992 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.1740 REMARK 3 BIN FREE R VALUE SET COUNT : 160 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2126 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 393 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.812 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2204 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3002 ; 1.499 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 6.527 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;35.038 ;24.271 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 409 ;11.933 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;20.811 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1659 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1163 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1549 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 302 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.170 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.377 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 56 ; 0.391 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1350 ; 2.290 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2217 ; 3.154 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 869 ; 4.904 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 772 ; 6.584 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS

REMARK 4 REMARK 4 2GG0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037070.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57560 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.280 REMARK 200 RESOLUTION RANGE LOW (A) : 24.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.10 REMARK 200 R MERGE FOR SHELL (I) : 0.17600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1C27 REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 25% PEG 8000, 100 REMARK 280 MM TRIS-HCL, 1-5 MM INHIBITOR, PH 7.0, BATCH, TEMPERATURE 298K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.52750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 754 O HOH A 851 2.05 REMARK 500 OE2 GLU A 160 O HOH A 993 2.12 REMARK 500 O HOH A 960 O HOH A 962 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 138 O HOH A 688 1455 1.43 REMARK 500 NH1 ARG A 138 O HOH A 644 1455 1.66 REMARK 500 NZ LYS A 218 O HOH A 836 1655 1.73 REMARK 500 O HOH A 958 O HOH A 968 2545 1.78 REMARK 500 ND1 HIS A 63 O HOH A 894 1655 1.78 REMARK 500 CZ ARG A 138 O HOH A 644 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 63 27.77 49.75 REMARK 500 ASN A 74 -116.48 58.94 REMARK 500 TYR A 168 96.99 50.40 REMARK 500 GLU A 204 57.91 -151.29 REMARK 500 TRP A 221 -50.88 -132.89 REMARK 500 REMARK 500 REMARK: NULL

REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 739 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A 753 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 757 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A 828 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH A 838 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH A 845 DISTANCE = 9.21 ANGSTROMS REMARK 525 HOH A 869 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH A 893 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 895 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH A 923 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH A 981 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A 994 DISTANCE = 5.90 ANGSTROMS

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 301 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 235 OE1 REMARK 620 2 ASP A 108 OD1 86.0 REMARK 620 3 HIS A 171 NE2 117.7 91.2 REMARK 620 4 GLU A 204 OE2 77.6 160.6 87.3 REMARK 620 5 U11 A 601 O27 89.2 100.2 151.7 90.1 REMARK 620 6 U11 A 601 O31 161.6 107.2 75.8 91.2 76.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 302 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 235 OE2 REMARK 620 2 ASP A 97 OD1 96.0 REMARK 620 3 ASP A 108 OD2 87.9 103.0 REMARK 620 4 U11 A 601 N24 171.8 91.0 94.8 REMARK 620 5 ASP A 97 OD2 97.1 57.5 160.1 83.0 REMARK 620 6 U11 A 601 O27 87.3 147.3 109.6 84.5 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 76 O REMARK 620 2 HOH A 680 O 110.2 REMARK 620 3 ASN A 74 O 98.6 136.4 REMARK 620 4 SER A 231 O 130.4 91.2 94.2 REMARK 620 N 1 2 3

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 301 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 302 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 603 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U11 A 601

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GG2 RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS REMARK 900 RELATED ID: 2GG3 RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS REMARK 900 RELATED ID: 2GG5 RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS REMARK 900 RELATED ID: 2GG7 RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS REMARK 900 RELATED ID: 2GG8 RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS REMARK 900 RELATED ID: 2GG9 RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS REMARK 900 RELATED ID: 2GGB RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS REMARK 900 RELATED ID: 2GGC RELATED DB: PDB REMARK 900 NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITORS

DBREF 2GG0 A 2 264 UNP P0AE18 AMPM_ECOLI 2 264

SEQRES 1 A 263 ALA ILE SER ILE LYS THR PRO GLU ASP ILE GLU LYS MET SEQRES 2 A 263 ARG VAL ALA GLY ARG LEU ALA ALA GLU VAL LEU GLU MET SEQRES 3 A 263 ILE GLU PRO TYR VAL LYS PRO GLY VAL SER THR GLY GLU SEQRES 4 A 263 LEU ASP ARG ILE CYS ASN ASP TYR ILE VAL ASN GLU GLN SEQRES 5 A 263 HIS ALA VAL SER ALA CYS LEU GLY TYR HIS GLY TYR PRO SEQRES 6 A 263 LYS SER VAL CYS ILE SER ILE ASN GLU VAL VAL CYS HIS SEQRES 7 A 263 GLY ILE PRO ASP ASP ALA LYS LEU LEU LYS ASP GLY ASP SEQRES 8 A 263 ILE VAL ASN ILE ASP VAL THR VAL ILE LYS ASP GLY PHE SEQRES 9 A 263 HIS GLY ASP THR SER LYS MET PHE ILE VAL GLY LYS PRO SEQRES 10 A 263 THR ILE MET GLY GLU ARG LEU CYS ARG ILE THR GLN GLU SEQRES 11 A 263 SER LEU TYR LEU ALA LEU ARG MET VAL LYS PRO GLY ILE SEQRES 12 A 263 ASN LEU ARG GLU ILE GLY ALA ALA ILE GLN LYS PHE VAL SEQRES 13 A 263 GLU ALA GLU GLY PHE SER VAL VAL ARG GLU TYR CYS GLY SEQRES 14 A 263 HIS GLY ILE GLY ARG GLY PHE HIS GLU GLU PRO GLN VAL SEQRES 15 A 263 LEU HIS TYR ASP SER ARG GLU THR ASN VAL VAL LEU LYS SEQRES 16 A 263 PRO GLY MET THR PHE THR ILE GLU PRO MET VAL ASN ALA SEQRES 17 A 263 GLY LYS LYS GLU ILE ARG THR MET LYS ASP GLY TRP THR SEQRES 18 A 263 VAL LYS THR LYS ASP ARG SER LEU SER ALA GLN TYR GLU SEQRES 19 A 263 HIS THR ILE VAL VAL THR ASP ASN GLY CYS GLU ILE LEU SEQRES 20 A 263 THR LEU ARG LYS ASP ASP THR ILE PRO ALA ILE ILE SER SEQRES 21 A 263 HIS ASP GLU

HET CO A 301 1 HET CO A 302 1 HET NA A 603 1 HET U11 A 601 27

HETNAM CO COBALT (II) ION HETNAM NA SODIUM ION HETNAM U11 METHYL N-{(2S,3R)-3-AMINO-2-HYDROXY-3-[4- HETNAM 2 U11 (TRIFLUOROMETHYL)PHENYL]PROPANOYL}ALANYLGLYCINATE

HETSYN U11 {2-[3-AMINO-2-HYDROXY-3-(4-TRIFLUOROMETHYL-PHENYL)- HETSYN 2 U11 PROPIONYLAMINO]-PROPIONYLAMINO}-ACETIC ACID METHYL HETSYN 3 U11 ESTER

FORMUL 2 CO 2(CO 2+) FORMUL 4 NA NA 1+ FORMUL 5 U11 C16 H20 F3 N3 O5 FORMUL 6 HOH *393(H2 O)

HELIX 1 1 THR A 7 GLU A 29 1 23 HELIX 2 2 PRO A 30 VAL A 32 5 3 HELIX 3 3 SER A 37 GLU A 52 1 16 HELIX 4 4 GLY A 61 TYR A 65 5 5 HELIX 5 5 THR A 119 VAL A 140 1 22 HELIX 6 6 ASN A 145 GLU A 160 1 16

SHEET 1 A 3 VAL A 56 SER A 57 0 SHEET 2 A 3 ILE A 93 LYS A 102 -1 O ILE A 101 N VAL A 56 SHEET 3 A 3 CYS A 70 ILE A 73 -1 N SER A 72 O ASN A 95 SHEET 1 B 3 VAL A 56 SER A 57 0 SHEET 2 B 3 ILE A 93 LYS A 102 -1 O ILE A 101 N VAL A 56 SHEET 3 B 3 PHE A 105 ILE A 114 -1 O THR A 109 N VAL A 98 SHEET 1 C 3 VAL A 76 CYS A 78 0 SHEET 2 C 3 VAL A 223 THR A 225 -1 O VAL A 223 N VAL A 77 SHEET 3 C 3 ILE A 214 THR A 216 -1 N ARG A 215 O LYS A 224 SHEET 1 D 3 SER A 163 VAL A 164 0 SHEET 2 D 3 MET A 206 ASN A 208 -1 O ASN A 208 N SER A 163 SHEET 3 D 3 SER A 231 GLN A 233 -1 O ALA A 232 N VAL A 207 SHEET 1 E 2 GLY A 170 GLY A 172 0 SHEET 2 E 2 GLU A 179 VAL A 183 -1 O VAL A 183 N GLY A 170 SHEET 1 F 4 THR A 200 ILE A 203 0 SHEET 2 F 4 HIS A 236 VAL A 240 -1 O ILE A 238 N PHE A 201 SHEET 3 F 4 GLY A 244 ILE A 247 -1 O GLU A 246 N VAL A 239 SHEET 4 F 4 ILE A 259 SER A 261 -1 O ILE A 260 N CYS A 245

LINK CO CO A 301 OE1 GLU A 235 1555 1555 2.15 LINK CO CO A 301 OD1 ASP A 108 1555 1555 2.12 LINK CO CO A 301 NE2 HIS A 171 1555 1555 2.09 LINK CO CO A 302 OE2 GLU A 235 1555 1555 2.11 LINK CO CO A 302 OD1 ASP A 97 1555 1555 2.08 LINK CO CO A 302 OD2 ASP A 108 1555 1555 1.96 LINK CO CO A 301 OE2 GLU A 204 1555 1555 2.21 LINK CO CO A 301 O27 U11 A 601 1555 1555 2.05 LINK CO CO A 301 O31 U11 A 601 1555 1555 2.33 LINK CO CO A 302 N24 U11 A 601 1555 1555 2.18 LINK CO CO A 302 OD2 ASP A 97 1555 1555 2.40 LINK CO CO A 302 O27 U11 A 601 1555 1555 2.03 LINK NA NA A 603 O VAL A 76 1555 1555 2.27 LINK NA NA A 603 O HOH A 680 1555 1555 2.16 LINK NA NA A 603 O ASN A 74 1555 1555 2.26 LINK NA NA A 603 O SER A 231 1555 1555 2.30

CISPEP 1 GLU A 180 PRO A 181 0 -3.02

SITE 1 AC1 6 ASP A 108 HIS A 171 GLU A 204 GLU A 235 SITE 2 AC1 6 CO A 302 U11 A 601 SITE 1 AC2 5 ASP A 97 ASP A 108 GLU A 235 CO A 301 SITE 2 AC2 5 U11 A 601 SITE 1 AC3 4 ASN A 74 VAL A 76 SER A 231 HOH A 680 SITE 1 AC4 16 TYR A 62 CYS A 70 HIS A 79 ASP A 97 SITE 2 AC4 16 THR A 99 ASP A 108 TYR A 168 CYS A 169 SITE 3 AC4 16 HIS A 171 PHE A 177 HIS A 178 GLU A 204 SITE 4 AC4 16 GLU A 235 CO A 301 CO A 302 HOH A 800

CRYST1 39.481 63.055 52.641 90.00 109.88 90.00 P 1 21 1 2

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.025329 0.000000 0.009159 0.00000

SCALE2 0.000000 0.015859 0.000000 0.00000

SCALE3 0.000000 0.000000 0.020200 0.00000