10 20 30 40 50 60 70 80 2GF7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 21-MAR-06 2GF7
TITLE DOUBLE TUDOR DOMAIN STRUCTURE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: JUMONJI DOMAIN-CONTAINING PROTEIN 2A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: DOUBLE TUDOR DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JMJD2A, JMJD2, KIAA0677; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A
KEYWDS DOUBLE TUDOR DOMAIN, TUDOR TANDEM, TRIMETHYL HISTONE H3 KEYWDS 2 LYSINE 4, TRIMETHYL HISONE DEMETHYLASE, JMJC DOMAIN KEYWDS 3 CONTAINING, METAL BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.HUANG,J.FANG,M.T.BEDFORD,Y.ZHANG,R.M.XU
REVDAT 3 24-FEB-09 2GF7 1 VERSN REVDAT 2 16-MAY-06 2GF7 1 JRNL REVDAT 1 02-MAY-06 2GF7 0
JRNL AUTH Y.HUANG,J.FANG,M.T.BEDFORD,Y.ZHANG,R.M.XU JRNL TITL RECOGNITION OF HISTONE H3 LYSINE-4 METHYLATION BY JRNL TITL 2 THE DOUBLE TUDOR DOMAIN OF JMJD2A JRNL REF SCIENCE V. 312 748 2006 JRNL REFN ISSN 0036-8075 JRNL PMID 16601153 JRNL DOI 10.1126/SCIENCE.1125162
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 40028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3262 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 663 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 56 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3704 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13700 REMARK 3 B22 (A**2) : -0.13700 REMARK 3 B33 (A**2) : 0.27400 REMARK 3 B12 (A**2) : -2.67900 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 42.83 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2GF7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037042.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930, 0.97990, 0.96000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43255 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M AMMONIUM SULFATE, 0.1 M HEPES REMARK 280 (7.4), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 94.95750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.82374 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 38.77233 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 94.95750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 54.82374 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.77233 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 94.95750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 54.82374 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 38.77233 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 94.95750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 54.82374 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.77233 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 94.95750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 54.82374 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 38.77233 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 94.95750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 54.82374 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 38.77233 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 109.64748 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 77.54467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 109.64748 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 77.54467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 109.64748 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 77.54467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 109.64748 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 77.54467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 109.64748 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 77.54467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 109.64748 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 77.54467 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 893 REMARK 465 PRO A 894 REMARK 465 ALA A 895 REMARK 465 LEU A 896 REMARK 465 GLY B 893 REMARK 465 PRO B 894 REMARK 465 ALA B 895 REMARK 465 LEU B 896 REMARK 465 GLY C 893 REMARK 465 PRO C 894 REMARK 465 ALA C 895 REMARK 465 LEU C 896 REMARK 465 GLY D 893 REMARK 465 PRO D 894 REMARK 465 ALA D 895 REMARK 465 LEU D 896
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 77 O HOH D 125 0.93 REMARK 500 CA THR B 923 O HOH B 276 1.27 REMARK 500 N VAL C 947 O HOH C 235 1.44 REMARK 500 CE2 TYR B 1004 O HOH B 316 1.45 REMARK 500 CD2 TYR B 1004 O HOH B 316 1.46 REMARK 500 N THR B 923 O HOH B 276 1.64 REMARK 500 N GLU C 959 O HOH C 201 1.79 REMARK 500 O GLU C 959 O HOH C 201 1.80 REMARK 500 N SER C 948 O HOH C 235 1.98 REMARK 500 C ILE C 946 O HOH C 235 2.03 REMARK 500 CB THR B 923 O HOH B 276 2.04 REMARK 500 C LEU B 922 O HOH B 276 2.04 REMARK 500 O LEU B 922 O HOH B 276 2.14 REMARK 500 C ALA C 958 O HOH C 201 2.17 REMARK 500 CG2 THR B 923 O HOH B 276 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 921 148.20 -171.14 REMARK 500 VAL A 978 -63.05 -102.04 REMARK 500 VAL B 978 -62.05 -103.04 REMARK 500 VAL C 978 -60.43 -98.34 REMARK 500 VAL D 978 -62.23 -99.60 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 282 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 253 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 254 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A 255 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH C 293 DISTANCE = 5.26 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 401 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 402 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404
DBREF 2GF7 A 895 1011 UNP O75164 JMJ2A_HUMAN 895 1011 DBREF 2GF7 B 895 1011 UNP O75164 JMJ2A_HUMAN 895 1011 DBREF 2GF7 C 895 1011 UNP O75164 JMJ2A_HUMAN 895 1011 DBREF 2GF7 D 895 1011 UNP O75164 JMJ2A_HUMAN 895 1011
SEQADV 2GF7 GLY A 893 UNP O75164 CLONING ARTIFACT SEQADV 2GF7 PRO A 894 UNP O75164 CLONING ARTIFACT SEQADV 2GF7 GLY B 893 UNP O75164 CLONING ARTIFACT SEQADV 2GF7 PRO B 894 UNP O75164 CLONING ARTIFACT SEQADV 2GF7 GLY C 893 UNP O75164 CLONING ARTIFACT SEQADV 2GF7 PRO C 894 UNP O75164 CLONING ARTIFACT SEQADV 2GF7 GLY D 893 UNP O75164 CLONING ARTIFACT SEQADV 2GF7 PRO D 894 UNP O75164 CLONING ARTIFACT
SEQRES 1 A 119 GLY PRO ALA LEU GLN SER ILE THR ALA GLY GLN LYS VAL SEQRES 2 A 119 ILE SER LYS HIS LYS ASN GLY ARG PHE TYR GLN CYS GLU SEQRES 3 A 119 VAL VAL ARG LEU THR THR GLU THR PHE TYR GLU VAL ASN SEQRES 4 A 119 PHE ASP ASP GLY SER PHE SER ASP ASN LEU TYR PRO GLU SEQRES 5 A 119 ASP ILE VAL SER GLN ASP CYS LEU GLN PHE GLY PRO PRO SEQRES 6 A 119 ALA GLU GLY GLU VAL VAL GLN VAL ARG TRP THR ASP GLY SEQRES 7 A 119 GLN VAL TYR GLY ALA LYS PHE VAL ALA SER HIS PRO ILE SEQRES 8 A 119 GLN MET TYR GLN VAL GLU PHE GLU ASP GLY SER GLN LEU SEQRES 9 A 119 VAL VAL LYS ARG ASP ASP VAL TYR THR LEU ASP GLU GLU SEQRES 10 A 119 LEU PRO SEQRES 1 B 119 GLY PRO ALA LEU GLN SER ILE THR ALA GLY GLN LYS VAL SEQRES 2 B 119 ILE SER LYS HIS LYS ASN GLY ARG PHE TYR GLN CYS GLU SEQRES 3 B 119 VAL VAL ARG LEU THR THR GLU THR PHE TYR GLU VAL ASN SEQRES 4 B 119 PHE ASP ASP GLY SER PHE SER ASP ASN LEU TYR PRO GLU SEQRES 5 B 119 ASP ILE VAL SER GLN ASP CYS LEU GLN PHE GLY PRO PRO SEQRES 6 B 119 ALA GLU GLY GLU VAL VAL GLN VAL ARG TRP THR ASP GLY SEQRES 7 B 119 GLN VAL TYR GLY ALA LYS PHE VAL ALA SER HIS PRO ILE SEQRES 8 B 119 GLN MET TYR GLN VAL GLU PHE GLU ASP GLY SER GLN LEU SEQRES 9 B 119 VAL VAL LYS ARG ASP ASP VAL TYR THR LEU ASP GLU GLU SEQRES 10 B 119 LEU PRO SEQRES 1 C 119 GLY PRO ALA LEU GLN SER ILE THR ALA GLY GLN LYS VAL SEQRES 2 C 119 ILE SER LYS HIS LYS ASN GLY ARG PHE TYR GLN CYS GLU SEQRES 3 C 119 VAL VAL ARG LEU THR THR GLU THR PHE TYR GLU VAL ASN SEQRES 4 C 119 PHE ASP ASP GLY SER PHE SER ASP ASN LEU TYR PRO GLU SEQRES 5 C 119 ASP ILE VAL SER GLN ASP CYS LEU GLN PHE GLY PRO PRO SEQRES 6 C 119 ALA GLU GLY GLU VAL VAL GLN VAL ARG TRP THR ASP GLY SEQRES 7 C 119 GLN VAL TYR GLY ALA LYS PHE VAL ALA SER HIS PRO ILE SEQRES 8 C 119 GLN MET TYR GLN VAL GLU PHE GLU ASP GLY SER GLN LEU SEQRES 9 C 119 VAL VAL LYS ARG ASP ASP VAL TYR THR LEU ASP GLU GLU SEQRES 10 C 119 LEU PRO SEQRES 1 D 119 GLY PRO ALA LEU GLN SER ILE THR ALA GLY GLN LYS VAL SEQRES 2 D 119 ILE SER LYS HIS LYS ASN GLY ARG PHE TYR GLN CYS GLU SEQRES 3 D 119 VAL VAL ARG LEU THR THR GLU THR PHE TYR GLU VAL ASN SEQRES 4 D 119 PHE ASP ASP GLY SER PHE SER ASP ASN LEU TYR PRO GLU SEQRES 5 D 119 ASP ILE VAL SER GLN ASP CYS LEU GLN PHE GLY PRO PRO SEQRES 6 D 119 ALA GLU GLY GLU VAL VAL GLN VAL ARG TRP THR ASP GLY SEQRES 7 D 119 GLN VAL TYR GLY ALA LYS PHE VAL ALA SER HIS PRO ILE SEQRES 8 D 119 GLN MET TYR GLN VAL GLU PHE GLU ASP GLY SER GLN LEU SEQRES 9 D 119 VAL VAL LYS ARG ASP ASP VAL TYR THR LEU ASP GLU GLU SEQRES 10 D 119 LEU PRO
HET SO4 D 401 5 HET SO4 C 402 5 HET SO4 B 403 5 HET SO4 A 404 5
HETNAM SO4 SULFATE ION
FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *200(H2 O)
HELIX 1 1 TYR A 942 ILE A 946 5 5 HELIX 2 2 ASP A 950 GLY A 955 1 6 HELIX 3 3 LYS A 999 VAL A 1003 5 5 HELIX 4 4 TYR B 942 ILE B 946 5 5 HELIX 5 5 ASP B 950 GLY B 955 1 6 HELIX 6 6 LYS B 999 VAL B 1003 5 5 HELIX 7 7 TYR C 942 ILE C 946 5 5 HELIX 8 8 ASP C 950 GLY C 955 1 6 HELIX 9 9 LYS C 999 VAL C 1003 5 5 HELIX 10 10 TYR D 942 ILE D 946 5 5 HELIX 11 11 ASP D 950 GLY D 955 1 6 HELIX 12 12 LYS D 999 ASP D 1001 5 3
SHEET 1 A 4 LYS A 904 LYS A 908 0 SHEET 2 A 4 PHE A 914 PHE A 932 -1 O CYS A 917 N VAL A 905 SHEET 3 A 4 VAL A 972 PHE A 990 -1 O ILE A 983 N GLU A 925 SHEET 4 A 4 VAL A 962 ARG A 966 -1 N VAL A 963 O ALA A 975 SHEET 1 B 4 PHE A 937 LEU A 941 0 SHEET 2 B 4 PHE A 914 PHE A 932 -1 N TYR A 928 O LEU A 941 SHEET 3 B 4 VAL A 972 PHE A 990 -1 O ILE A 983 N GLU A 925 SHEET 4 B 4 GLN A 995 VAL A 998 -1 O VAL A 998 N TYR A 986 SHEET 1 C 4 LYS B 904 LYS B 908 0 SHEET 2 C 4 PHE B 914 PHE B 932 -1 O CYS B 917 N VAL B 905 SHEET 3 C 4 VAL B 972 PHE B 990 -1 O ILE B 983 N GLU B 925 SHEET 4 C 4 VAL B 962 ARG B 966 -1 N VAL B 965 O TYR B 973 SHEET 1 D 4 PHE B 937 LEU B 941 0 SHEET 2 D 4 PHE B 914 PHE B 932 -1 N TYR B 928 O LEU B 941 SHEET 3 D 4 VAL B 972 PHE B 990 -1 O ILE B 983 N GLU B 925 SHEET 4 D 4 GLN B 995 VAL B 998 -1 O VAL B 998 N TYR B 986 SHEET 1 E 4 LYS C 904 LYS C 908 0 SHEET 2 E 4 PHE C 914 PHE C 932 -1 O CYS C 917 N VAL C 905 SHEET 3 E 4 VAL C 972 PHE C 990 -1 O ALA C 979 N GLU C 929 SHEET 4 E 4 VAL C 962 ARG C 966 -1 N VAL C 965 O TYR C 973 SHEET 1 F 4 PHE C 937 LEU C 941 0 SHEET 2 F 4 PHE C 914 PHE C 932 -1 N TYR C 928 O LEU C 941 SHEET 3 F 4 VAL C 972 PHE C 990 -1 O ALA C 979 N GLU C 929 SHEET 4 F 4 GLN C 995 VAL C 998 -1 O VAL C 998 N TYR C 986 SHEET 1 G 4 PHE D 937 LEU D 941 0 SHEET 2 G 4 PHE D 914 PHE D 932 -1 N TYR D 928 O LEU D 941 SHEET 3 G 4 VAL D 972 PHE D 990 -1 O ILE D 983 N GLU D 925 SHEET 4 G 4 GLN D 995 VAL D 998 -1 O VAL D 998 N TYR D 986 SHEET 1 H 5 VAL D 962 ARG D 966 0 SHEET 2 H 5 VAL D 972 PHE D 990 -1 O ALA D 975 N VAL D 963 SHEET 3 H 5 PHE D 914 PHE D 932 -1 N GLU D 925 O ILE D 983 SHEET 4 H 5 LYS D 904 LYS D 908 -1 N VAL D 905 O CYS D 917 SHEET 5 H 5 VAL D1003 TYR D1004 -1 O TYR D1004 N ILE D 906
CISPEP 1 LEU A 1010 PRO A 1011 0 -0.36 CISPEP 2 LEU B 1010 PRO B 1011 0 -0.39 CISPEP 3 LEU C 1010 PRO C 1011 0 -0.28 CISPEP 4 LEU D 1010 PRO D 1011 0 -0.19
SITE 1 AC1 4 HOH D 229 LYS D 910 SER D 994 GLN D 995 SITE 1 AC2 3 LYS C 910 SER C 994 GLN C 995 SITE 1 AC3 4 HOH B 91 LYS B 910 SER B 994 GLN B 995 SITE 1 AC4 4 HOH A 278 LYS A 910 SER A 994 GLN A 995
CRYST1 189.915 189.915 116.317 90.00 90.00 120.00 H 3 2 72
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005266 0.003040 0.000000 0.00000
SCALE2 0.000000 0.006080 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008597 0.00000