10 20 30 40 50 60 70 80 2GE6 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LYASE 17-MAR-06 2GE6
TITLE PROTEIN MODELING OF ENOLASE (NEOCALLIMASTIX FRONTALIS)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 2-PHOSPHOGLYCERATE DEHYDRATASE, 2-PHOSPHO-D- COMPND 5 GLYCERATE HYDRO-LYASE; COMPND 6 EC: 4.2.1.11
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEOCALLIMASTIX FRONTALIS; SOURCE 3 ORGANISM_COMMON: RUMEN FUNGUS
KEYWDS ENOLASE, SPDBV, THEORITICAL PROTEIN MODEL
EXPDTA THEORETICAL MODEL
AUTHOR J.A.BRAINERD,N.VIKASH,A.GOPAAL
REVDAT 1 04-APR-06 2GE6 0
JRNL AUTH J.A.BRAINERD,N.VIKASH,A.GOPAAL JRNL TITL PROTEIN MODELING OF ENOLASE (NEOCALLIMASTIX JRNL TITL 2 FRONTALIS) JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.PEITSCH REMARK 1 TITL PROTEIN MODELING BY EMAIL REMARK 1 REF BIO/TECHNOLOGY V. 13 658 1995 REMARK 1 REFN ASTM BTCHDA US ISSN 0733-222X REMARK 1 REFERENCE 2 REMARK 1 AUTH M.C.PEITSCH REMARK 1 TITL PROMOD AND SWISS-MODEL: INTERNET-BASED TOOLS FOR REMARK 1 TITL 2 AUTOMATED COMPARATIVE PROTEIN MODELLING REMARK 1 REF BIOCHEM.SOC.TRANS. V. 24 274 1996 REMARK 1 REFN ASTM BCSTB5 UK ISSN 0300-5127 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.C.PEITSCH,N.GUEX REMARK 1 TITL LARGE-SCALE COMPARATIVE PROTEIN MODELLING REMARK 1 REF PROTEOME RESEARCH: NEW 1997 REMARK 1 REF 2 FRONTIERS IN FUNCTIONAL REMARK 1 REF 3 GENOMICS REMARK 1 REFN US ISSN 3-540-62753-7 REMARK 1 REFERENCE 4 REMARK 1 AUTH N.GUEX,M.C.PEITSCH REMARK 1 TITL SWISS-MODEL AND THE SWISS-PDBVIEWER: AN REMARK 1 TITL 2 ENVIRONMENT FOR COMPARATIVE PROTEIN MODELING REMARK 1 REF ELECTROPHORESIS V. 18 2714 1997 REMARK 1 REFN GE ISSN 0173-0835 REMARK 1 REFERENCE 5 REMARK 1 AUTH T.SCHWEDE,J.KOPP,N.GUEX,M.C.PEITSCH REMARK 1 TITL SWISS-MODEL: AN AUTOMATED PROTEIN REMARK 1 TITL 2 HOMOLOGY-MODELING SERVER REMARK 1 REF NUCLEIC ACIDS RES. V. 31 3381 2003 REMARK 1 REFN ASTM NARHAD UK ISSN 0305-1048
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : GROMOS9 REMARK 3 AUTHORS : FUJINAGA,GROS,VAN GUNSTEREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2GE6 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-2006. REMARK 100 THE RCSB ID CODE IS RCSB037007.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 141 C LYS A 141 O 0.131 REMARK 500 GLY A 142 N GLY A 142 CA 0.098 REMARK 500 GLY A 142 C GLY A 142 O 0.142 REMARK 500 LYS A 141 C GLY A 142 N -0.260 REMARK 500 GLY A 142 C PRO A 143 N -0.092 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 142 C - N - CA ANGL. DEV. = 25.9 DEGREES REMARK 500 GLY A 142 CA - C - N ANGL. DEV. = 16.8 DEGREES REMARK 500 LEU A 193 CB - CG - CD2 ANGL. DEV. =-12.2 DEGREES REMARK 500 LYS A 393 CB - CG - CD ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 314 ASP A 315 129.34
DBREF 2GE6 A 2 436 UNP P42894 ENO_NEOFR 2 436
SEQRES 1 A 435 ALA ILE THR LYS VAL HIS ALA ARG GLN ILE PHE ASP SER SEQRES 2 A 435 ARG GLY ASN PRO THR VAL GLU VAL GLU VAL THR THR ASP SEQRES 3 A 435 LYS GLY LEU PHE ARG ALA ALA VAL PRO SER GLY ALA SER SEQRES 4 A 435 THR GLY VAL HIS GLU ALA LEU GLU LEU ARG ASP GLY ILE SEQRES 5 A 435 LYS ALA ASP TYR VAL GLY LYS GLY VAL LEU LYS ALA VAL SEQRES 6 A 435 GLU ASN VAL ASN LYS THR ILE ALA PRO ALA LEU VAL ALA SEQRES 7 A 435 ALA ASN LEU ASP VAL LYS ASN GLN LYS ALA VAL ASP ASP SEQRES 8 A 435 PHE LEU LEU LYS LEU ASP GLY THR PRO ASN LYS SER LYS SEQRES 9 A 435 LEU GLY ALA ASN ALA ILE LEU GLY VAL SER LEU ALA VAL SEQRES 10 A 435 ALA ARG ALA GLY ALA ALA ASP LYS GLY VAL PRO LEU TYR SEQRES 11 A 435 GLN HIS LEU GLY GLU LEU ALA GLY ASN LYS GLY PRO TRP SEQRES 12 A 435 ILE LEU PRO VAL PRO SER MET ASN VAL LEU ASN GLY GLY SEQRES 13 A 435 SER HIS ALA GLY ASN LYS LEU ALA MET GLN GLU PHE MET SEQRES 14 A 435 ILE LEU PRO THR GLY ALA LYS SER PHE THR GLU ALA LEU SEQRES 15 A 435 LYS MET GLY SER GLU VAL TYR HIS ALA LEU LYS SER VAL SEQRES 16 A 435 ILE LYS ALA LYS TYR GLY GLN ASP ALA CYS ASN VAL GLY SEQRES 17 A 435 ASP GLU GLY GLY PHE ALA PRO ASN ILE GLN ASP ASN LYS SEQRES 18 A 435 GLU GLY LEU GLU LEU LEU ASN GLU ALA ILE ALA LYS ALA SEQRES 19 A 435 GLY TYR THR GLY LYS VAL LYS ILE GLY MET ASP VAL ALA SEQRES 20 A 435 SER SER GLU PHE TYR LYS ASP GLY LYS TYR ASP LEU ASP SEQRES 21 A 435 PHE LYS ASN PRO ASN SER ASP PRO SER LYS TRP ILE SER SEQRES 22 A 435 GLY GLU GLU LEU GLY GLN PHE TYR LYS GLU ILE THR SER SEQRES 23 A 435 GLU TYR PRO ILE VAL SER ILE GLU ASP PRO TYR ASP GLN SEQRES 24 A 435 ASP ASP PHE GLU SER TRP SER LYS PHE ARG ALA ASP MET SEQRES 25 A 435 GLN ASP LYS ILE GLN ILE VAL GLY ASP ASP LEU THR VAL SEQRES 26 A 435 THR ASN PRO LYS ARG ILE ALA MET ALA ILE GLU LYS LYS SEQRES 27 A 435 ALA CYS ASN GLY LEU LEU LEU LYS VAL ASN GLN ILE GLY SEQRES 28 A 435 THR VAL SER GLU SER ILE GLN ALA ALA LEU ASP ALA PHE SEQRES 29 A 435 ASN ASP GLY TRP GLY VAL MET VAL SER HIS ARG SER GLY SEQRES 30 A 435 GLU THR GLU ASP THR PHE ILE ALA ASP LEU VAL VAL GLY SEQRES 31 A 435 LEU LYS SER GLY GLN ILE LYS THR GLY ALA PRO CYS ARG SEQRES 32 A 435 SER GLU ARG LEU ALA LYS TYR ASN GLN LEU LEU ARG ILE SEQRES 33 A 435 GLU GLU GLU LEU GLY ALA ASN ALA THR TYR ALA GLY GLU SEQRES 34 A 435 ASN PHE ARG ARG PRO PHE
HELIX 1 1 ASP A 56 LYS A 60 5 5 HELIX 2 2 VAL A 62 THR A 72 1 11 HELIX 3 3 THR A 72 ASN A 81 1 10 HELIX 4 4 ASN A 86 GLY A 99 1 14 HELIX 5 5 GLY A 107 GLY A 127 1 21 HELIX 6 6 PRO A 129 ALA A 138 1 10 HELIX 7 7 GLY A 157 ALA A 160 5 4 HELIX 8 8 SER A 178 GLY A 202 1 25 HELIX 9 9 GLN A 203 ASN A 207 5 5 HELIX 10 10 ASP A 220 GLY A 236 1 17 HELIX 11 11 ALA A 248 GLU A 251 5 4 HELIX 12 12 ASP A 268 TRP A 272 5 5 HELIX 13 13 SER A 274 TYR A 289 1 16 HELIX 14 14 ASP A 302 ALA A 311 1 10 HELIX 15 15 ASN A 328 LYS A 338 1 11 HELIX 16 16 LYS A 347 GLY A 352 1 6 HELIX 17 17 THR A 353 ASP A 367 1 15 HELIX 18 18 THR A 383 LEU A 392 1 10 HELIX 19 19 ARG A 404 GLY A 422 1 19 HELIX 20 20 GLY A 429 PHE A 432 5 4
SHEET 1 A 3 LYS A 5 PHE A 12 0 SHEET 2 A 3 PRO A 18 THR A 26 -1 O GLU A 23 N HIS A 7 SHEET 3 A 3 GLY A 29 ALA A 34 -1 O PHE A 31 N VAL A 24 SHEET 1 B 2 TRP A 144 LEU A 146 0 SHEET 2 B 2 ALA A 425 TYR A 427 1 O THR A 426 N LEU A 146 SHEET 1 C 9 VAL A 148 PRO A 149 0 SHEET 2 C 9 GLN A 396 LYS A 398 1 O ILE A 397 N VAL A 148 SHEET 3 C 9 GLY A 370 SER A 374 1 N VAL A 373 O LYS A 398 SHEET 4 C 9 GLY A 343 LEU A 346 1 N LEU A 344 O MET A 372 SHEET 5 C 9 GLN A 318 GLY A 321 1 N GLY A 321 O GLY A 343 SHEET 6 C 9 ILE A 291 GLU A 295 1 N ILE A 294 O VAL A 320 SHEET 7 C 9 LYS A 242 ASP A 246 1 N ILE A 243 O VAL A 292 SHEET 8 C 9 GLU A 168 LEU A 172 -1 N LEU A 172 O LYS A 242 SHEET 9 C 9 MET A 151 ASN A 155 -1 N MET A 151 O ILE A 171 SHEET 1 D 2 TYR A 253 LYS A 254 0 SHEET 2 D 2 LYS A 257 TYR A 258 -1 O LYS A 257 N LYS A 254
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000