10 20 30 40 50 60 70 80 2GE1 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE/TRANSPORT PROTEIN 17-MAR-06 2GE1
TITLE PROTEIN COMPLEX OF A-STATE TYCC3-APO-PCP WITH THE PPTASE TITLE 2 SFP (MODEL)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4'-PHOSPHOPANTETHEINYL TRANSFERASE SFP; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SURFACTIN SYNTHETASE-ACTIVATING ENZYME; COMPND 5 EC: 2.7.8.-; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TYROCIDINE SYNTHETASE III; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: ACYL CARRIER 3, TYCC3 THIOESTER DOMAIN; COMPND 10 SYNONYM: NON-RIBOSOMAL PEPTIDE SYNTHETASE PEPTIDYL CARRIER COMPND 11 PROTEIN; COMPND 12 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 GENUS: SFP, LPA-8; SOURCE 5 STRAIN: ATCC 21332; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: BREVIBACILLUS PARABREVIS; SOURCE 8 ORGANISM_COMMON: BACTERIA; SOURCE 9 GENUS: TYCC; SOURCE 10 STRAIN: ATCC 8185
KEYWDS 4'-PHOSPHOPANTETHEINYL TRANSFERASE SFP/COENZYME A IN KEYWDS 2 COMPLEX WITH A-STATE TYCC3-APO-PCP, COENZYME A
EXPDTA THEORETICAL MODEL
AUTHOR A.KOGLIN,M.-M.BLUM,V.V.ROGOV,M.A.MARAHIEL,F.BERNHARD, AUTHOR 2 V.DOETSCH
REVDAT 1 01-AUG-06 2GE1 0
JRNL AUTH A.KOGLIN,M.R.MOFID,F.LOEHR,B.SCHAEFER,V.V.ROGOV, JRNL AUTH 2 M.-M.BLUM,T.MITTAG,M.A.MARAHIEL,F.BERNHARD, JRNL AUTH 3 V.DOETSCH JRNL TITL CONFORMATIONAL SWITCHES MODULATE PROTEIN JRNL TITL 2 INTERACTIONS IN PEPTIDE ANTIBIOTIC SYNTHETASES JRNL REF SCIENCE V. 312 273 2006 JRNL REFN ASTM SCIEAS US ISSN 0036-8075
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.REUTER,M.R.MOFID,M.A.MARAHIEL,R.FICNER REMARK 1 TITL CRYSTAL STRUCTURE OF THE SURFACTIN REMARK 1 TITL 2 SYNTHETASE-ACTIVATING ENZYME SFP: A PROTOTYPE OF REMARK 1 TITL 3 THE 4'-PHOSPHOPANTHETEINYL TRANSFERASE SUPERFAMILY REMARK 1 REF EMBO J. V. 18 6823 1999 REMARK 1 REFN ASTM EMJODG UK ISSN 0261-4189
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: COMPLEX MODELING OF SFP/CO A AND A- REMARK 3 STATE TYCC3-APO-PCP BY HADDOCK BASED ON MUTATIONAL ANALYSIS REMARK 3 AND NMR-TITRATION EXPERIMENTS
REMARK 4 REMARK 4 2GE1 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAR-2006. REMARK 100 THE RCSB ID CODE IS RCSB037002.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 VAL B 3
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O ARG A 34 CZ PHE B 38 1.81 REMARK 500 OG SER B 45 AO3 COA A 1001 1.91 REMARK 500 CE1 PHE A 122 CD1 LEU B 46 1.94 REMARK 500 O ARG A 34 CE2 PHE B 38 1.99 REMARK 500 CD1 PHE A 122 CD1 LEU B 46 2.06 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 221 CB GLU A 221 CG 0.067 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 45 CA - CB - CG ANGL. DEV. = 9.0 DEGREES REMARK 500 SER A 89 N - CA - C ANGL. DEV. = -8.7 DEGREES REMARK 500 VAL A 95 N - CA - C ANGL. DEV. =-11.5 DEGREES REMARK 500 LYS A 110 N - CA - C ANGL. DEV. = -8.5 DEGREES REMARK 500 ILE A 118 N - CA - C ANGL. DEV. = -9.1 DEGREES REMARK 500 PHE A 123 N - CA - C ANGL. DEV. =-12.1 DEGREES REMARK 500 LYS A 125 N - CA - C ANGL. DEV. = -8.9 DEGREES REMARK 500 SER A 179 N - CA - C ANGL. DEV. = -9.7 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 118 -40.72 81.64 REMARK 500 VAL B 9 -55.83 78.67 REMARK 500 VAL B 26 -54.47 72.69 REMARK 500 ALA B 53 -110.45 -155.20 REMARK 500 LEU B 65 -99.30 54.21 REMARK 500 LYS B 66 -66.27 70.34 REMARK 500 VAL B 67 -77.05 65.63
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GDW RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE B. BREVIS TYCC3-PCP IN A/H-STATE REMARK 900 RELATED ID: 2GDX RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE B. BREVIS TYCC3-PCP IN H-STATE REMARK 900 RELATED ID: 2GDY RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE B. BREVIS TYCC3-PCP IN A-STATE REMARK 900 RELATED ID: 1QR0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SFP REMARK 900 RELATED ID: 2GEO RELATED DB: PDB REMARK 900 ACTIVE COMPLEX OF COENZYME A AND THE PPTASE SFP FROM B. REMARK 900 SUBTILIS
DBREF 2GE1 A 1 224 UNP P39135 SFP_BACSU 1 224 DBREF 2GE1 B 2 83 UNP O30409 TYCC_BREPA 3033 3113
SEQADV 2GE1 ARG A 225 UNP P39135 CLONING ARTIFACT SEQADV 2GE1 ALA A 226 UNP P39135 CLONING ARTIFACT SEQADV 2GE1 ALA A 227 UNP P39135 CLONING ARTIFACT SEQADV 2GE1 ALA A 228 UNP P39135 CLONING ARTIFACT SEQADV 2GE1 MET B 1 UNP O30409 INITIATING METHIONINE SEQADV 2GE1 GLY B 2 UNP O30409 PRO 3032 ENGINEERED SEQADV 2GE1 ARG B 84 UNP O30409 CLONING ARTIFACT SEQADV 2GE1 SER B 85 UNP O30409 CLONING ARTIFACT
SEQRES 1 A 228 MET LYS ILE TYR GLY ILE TYR MET ASP ARG PRO LEU SER SEQRES 2 A 228 GLN GLU GLU ASN GLU ARG PHE MET THR PHE ILE SER PRO SEQRES 3 A 228 GLU LYS ARG GLU LYS CYS ARG ARG PHE TYR HIS LYS GLU SEQRES 4 A 228 ASP ALA HIS ARG THR LEU LEU GLY ASP VAL LEU VAL ARG SEQRES 5 A 228 SER VAL ILE SER ARG GLN TYR GLN LEU ASP LYS SER ASP SEQRES 6 A 228 ILE ARG PHE SER THR GLN GLU TYR GLY LYS PRO CYS ILE SEQRES 7 A 228 PRO ASP LEU PRO ASP ALA HIS PHE ASN ILE SER HIS SER SEQRES 8 A 228 GLY ARG TRP VAL ILE GLY ALA PHE ASP SER GLN PRO ILE SEQRES 9 A 228 GLY ILE ASP ILE GLU LYS THR LYS PRO ILE SER LEU GLU SEQRES 10 A 228 ILE ALA LYS ARG PHE PHE SER LYS THR GLU TYR SER ASP SEQRES 11 A 228 LEU LEU ALA LYS ASP LYS ASP GLU GLN THR ASP TYR PHE SEQRES 12 A 228 TYR HIS LEU TRP SER MET LYS GLU SER PHE ILE LYS GLN SEQRES 13 A 228 GLU GLY LYS GLY LEU SER LEU PRO LEU ASP SER PHE SER SEQRES 14 A 228 VAL ARG LEU HIS GLN ASP GLY GLN VAL SER ILE GLU LEU SEQRES 15 A 228 PRO ASP SER HIS SER PRO CYS TYR ILE LYS THR TYR GLU SEQRES 16 A 228 VAL ASP PRO GLY TYR LYS MET ALA VAL CYS ALA ALA HIS SEQRES 17 A 228 PRO ASP PHE PRO GLU ASP ILE THR MET VAL SER TYR GLU SEQRES 18 A 228 GLU LEU LEU ARG ALA ALA ALA SEQRES 1 B 85 MET GLY VAL THR GLU ALA GLN TYR VAL ALA PRO THR ASN SEQRES 2 B 85 ALA VAL GLU SER LYS LEU ALA GLU ILE TRP GLU ARG VAL SEQRES 3 B 85 LEU GLY VAL SER GLY ILE GLY ILE LEU ASP ASN PHE PHE SEQRES 4 B 85 GLN ILE GLY GLY HIS SER LEU LYS ALA MET ALA VAL ALA SEQRES 5 B 85 ALA GLN VAL HIS ARG GLU TYR GLN VAL GLU LEU PRO LEU SEQRES 6 B 85 LYS VAL LEU PHE ALA GLN PRO THR ILE LYS ALA LEU ALA SEQRES 7 B 85 GLN TYR VAL ALA THR ARG SER
HET MG A 400 1 HET COA A1001 55
HETNAM MG MAGNESIUM ION HETNAM COA COENZYME A
FORMUL 3 MG MG 2+ FORMUL 4 COA C21 H36 N7 O16 P3 S
HELIX 1 1 SER A 13 THR A 22 1 10 HELIX 2 2 SER A 25 PHE A 35 1 11 HELIX 3 3 HIS A 37 TYR A 59 1 23 HELIX 4 4 ASP A 62 ILE A 66 5 5 HELIX 5 5 SER A 115 LYS A 120 1 6 HELIX 6 6 SER A 124 LYS A 134 1 11 HELIX 7 7 ASP A 135 GLY A 158 1 24 HELIX 8 8 GLN A 174 GLY A 176 5 3 HELIX 9 9 SER A 219 ARG A 225 1 7 HELIX 10 10 LYS B 18 GLU B 24 1 7 HELIX 11 11 GLN B 54 GLU B 62 5 9 HELIX 12 12 LYS B 75 TYR B 80 1 6
SHEET 1 A 4 HIS A 85 SER A 91 0 SHEET 2 A 4 TRP A 94 ASP A 100 -1 O ILE A 96 N SER A 89 SHEET 3 A 4 LYS A 2 TYR A 7 -1 N ILE A 6 O VAL A 95 SHEET 4 A 4 THR A 216 MET A 217 1 O THR A 216 N ILE A 3 SHEET 1 B 2 SER A 69 THR A 70 0 SHEET 2 B 2 PRO A 76 CYS A 77 -1 O CYS A 77 N SER A 69 SHEET 1 C 3 GLY A 105 LYS A 110 0 SHEET 2 C 3 TYR A 200 ALA A 206 -1 O CYS A 205 N GLY A 105 SHEET 3 C 3 TYR A 190 TYR A 194 -1 N TYR A 190 O ALA A 206 SHEET 1 D 2 SER A 169 LEU A 172 0 SHEET 2 D 2 VAL A 178 GLU A 181 -1 O GLU A 181 N SER A 169
LINK OD1 ASP A 107 MG MG A 400 LINK AO2 COA A1001 MG MG A 400
CISPEP 1 LEU A 182 PRO A 183 0 0.11
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000