2G1G - Header Asymmetric Unit

HEADER RNA 14-FEB-06 2G1G

TITLE SOLUTION STRUCTURE OF THE ANTICODON LOOP OF S. POMBE TRNAI TITLE 2 INCLUDING THE NATURALLY OCCURRING N6-THREONYL ADENINE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*AP*CP*GP*GP*GP*CP*UP*CP*AP*UP*(T6A) COMPND 3 P*AP*CP*CP*CP*GP*U)-3'; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: ANTICODONLOOP TRNAI

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: PHOSPHORAMIDATE OLIGONUCLEOTIDE SYNTHESIS; SOURCE 4 THE SEQUENCE OF THIS RNA CAN BE FOUND NATURALLY IN S. SOURCE 5 POMBE.

KEYWDS T-RNAI ANTICODONLOOP T6A

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR E.LESCRINIER

REVDAT 2 24-FEB-09 2G1G 1 VERSN REVDAT 1 20-JUN-06 2G1G 0

JRNL AUTH E.LESCRINIER,K.NAUWELAERTS,K.ZANIER,K.POESEN, JRNL AUTH 2 M.SATTLER,P.HERDEWIJN JRNL TITL THE NATURALLY OCCURRING N6-THREONYL ADENINE IN JRNL TITL 2 ANTICODON LOOP OF SCHIZOSACCHAROMYCES POMBE TRNAI JRNL TITL 3 CAUSES FORMATION OF A UNIQUE U-TURN MOTIF JRNL REF NUCLEIC ACIDS RES. V. 34 2878 2006 JRNL REFN ISSN 0305-1048 JRNL PMID 16738127 JRNL DOI 10.1093/NAR/GKL081

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2G1G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-06. REMARK 100 THE RCSB ID CODE IS RCSB036568.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295; 278 REMARK 210 PH : 7.4; 7.4 REMARK 210 IONIC STRENGTH : ...; ... REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM RNA; PH 7.4; 100% D2O; REMARK 210 0.6MM RNA; PH 7.4; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, [1H,13C] REMARK 210 HSQC, [1H,31P]HETCOR, 2D- REMARK 210 WATERGATE-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY, DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1 REMARK 210 REV2002.113.19.37, FELIX 95, REMARK 210 VNMR 6.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 73 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 A A 1 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 9 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 G A 16 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 G A 16 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 2 A A 1 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 9 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 G A 16 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 G A 16 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 A A 1 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 3 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 3 A A 9 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 3 G A 16 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 3 G A 16 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 4 A A 1 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 4 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 4 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 4 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 4 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 4 A A 9 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 4 G A 16 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 4 G A 16 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 5 A A 1 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 5 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 5 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 5 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 5 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 5 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 220 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FEQ RELATED DB: PDB REMARK 900 ANTICODONLOOP OP TRNAUUU INCLUDING THE NATURALLY OCCURRING REMARK 900 N6-THREONYL ADENINE

DBREF 2G1G A 1 17 PDB 2G1G 2G1G 1 17

SEQRES 1 A 17 A C G G G C U C A U T6A A C SEQRES 2 A 17 C C G U

MODRES 2G1G T6A A 11 A

HET T6A A 11 49

HETNAM T6A N-[N-(9-B-D-RIBOFURANOSYLPURIN-6-YL) HETNAM 2 T6A CARBAMOYL]THREONINE-5'-MONOPHOSPHATE

HETSYN T6A N-(NEBULARIN-6-YLCARBAMOYL)-L-THREONINE-5'- HETSYN 2 T6A MONOPHOSPHATE

FORMUL 1 T6A C15 H21 N6 O11 P

LINK O3' U A 10 P T6A A 11 1555 1555 1.62 LINK O3' T6A A 11 P A A 12 1555 1555 1.62

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000