2G0L - Header Asymmetric Unit

HEADER ANTIBIOTIC 13-FEB-06 2G0L

TITLE SOLUTION STRUCTURE OF NEOCARZINOSTATIN APO-PROTEIN WITH TITLE 2 BOUND FLAVONE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEOCARZINOSTATIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NCS, MITOMALCIN, MMC; COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES CARZINOSTATICUS; SOURCE 3 ORGANISM_TAXID: 1897; SOURCE 4 GENE: NCSA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HB2151; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCANTABB5

KEYWDS BETA SANDWICH, IGG FOLD, ANTIBIOTIC

EXPDTA SOLUTION NMR

NUMMDL 58

AUTHOR F.W.MUSKETT,R.G.STONEMAN,S.CADDICK,D.N.WOOLFSON

REVDAT 3 24-FEB-09 2G0L 1 VERSN REVDAT 2 11-APR-06 2G0L 1 JRNL REVDAT 1 28-MAR-06 2G0L 0

JRNL AUTH S.CADDICK,F.W.MUSKETT,R.G.STONEMAN,D.N.WOOLFSON JRNL TITL SYNTHETIC LIGANDS FOR APO-NEOCARZINOSTATIN JRNL REF J.AM.CHEM.SOC. V. 128 4204 2006 JRNL REFN ISSN 0002-7863 JRNL PMID 16568976 JRNL DOI 10.1021/JA058419I

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 TITL SOLUTION STRUCTURE OF A NOVEL CHROMOPROTEIN REMARK 1 TITL 2 DERIVED FROM APO-NEOCARZINOSTATIN AND A SYNTHETIC REMARK 1 TITL 3 CHROMOPHORE. REMARK 1 REF BIOCHEMISTRY V. 41 11731 2002 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 12269815 REMARK 1 DOI 10.1021/BI0262146

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.3 REV 2005.356.10.50, HADDOCK 1.2 REMARK 3 AUTHORS : F. DELAGLIO (NMRPIPE), CYRIL DOMINGUEZ, ROLF REMARK 3 BOELENS AND ALEXANDRE M.J.J. BONVIN (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2G0L COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-06. REMARK 100 THE RCSB ID CODE IS RCSB036537.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 50MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM APO-NEOCARZINOSTATIN U- REMARK 210 15N,13C; 25 MM SODIUM REMARK 210 PHOSPHATE, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D_15N-SEPARATED_ REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS, INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.11, CYANA 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 58 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-58 REMARK 465 RES C SSSEQI REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 LEU A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 26 -169.25 -103.61 REMARK 500 1 THR A 42 96.50 -63.07 REMARK 500 1 ALA A 50 -70.87 -76.36 REMARK 500 1 ASP A 51 59.44 -99.32 REMARK 500 1 CYS A 88 50.32 -106.31 REMARK 500 2 LEU A 26 -164.84 -100.72 REMARK 500 2 GLN A 36 46.07 -86.74 REMARK 500 2 CYS A 37 104.14 -59.97 REMARK 500 2 ASP A 51 39.33 -144.83 REMARK 500 3 ALA A 5 78.19 -100.27 REMARK 500 3 THR A 42 95.52 -69.28 REMARK 500 3 ALA A 50 -60.46 -105.46 REMARK 500 4 SER A 14 -169.61 -78.39 REMARK 500 4 ASP A 58 -173.06 -69.96 REMARK 500 5 SER A 10 39.67 -95.42 REMARK 500 5 PRO A 49 46.40 -86.01 REMARK 500 5 ALA A 50 -66.04 -144.70 REMARK 500 5 TRP A 83 -69.17 -99.20 REMARK 500 5 ASP A 99 -166.43 -77.83 REMARK 500 6 SER A 10 41.23 -91.51 REMARK 500 6 ALA A 50 -66.72 -96.23 REMARK 500 7 ASP A 58 -179.04 -69.80 REMARK 500 8 SER A 10 48.57 -87.82 REMARK 500 8 THR A 42 99.89 -60.78 REMARK 500 10 ASP A 99 -159.90 -85.55 REMARK 500 11 CYS A 37 99.47 -67.64 REMARK 500 13 SER A 10 48.43 -87.26 REMARK 500 13 CYS A 37 98.50 -67.35 REMARK 500 13 THR A 42 97.75 -63.03 REMARK 500 13 ASP A 79 -22.43 -163.26 REMARK 500 14 SER A 10 34.40 -87.88 REMARK 500 14 LEU A 13 -168.32 -104.50 REMARK 500 14 ALA A 50 -71.91 -90.57 REMARK 500 14 ASP A 51 49.61 -86.96 REMARK 500 14 TRP A 83 -64.91 -147.00 REMARK 500 14 ASP A 99 -169.96 -79.36 REMARK 500 15 SER A 10 35.16 -87.44 REMARK 500 15 THR A 42 97.24 -66.10 REMARK 500 15 ALA A 50 -68.90 -101.76 REMARK 500 15 ASP A 51 45.27 -90.89 REMARK 500 17 SER A 10 33.15 -86.49 REMARK 500 18 SER A 10 32.33 -92.55 REMARK 500 18 ALA A 63 106.67 -163.23 REMARK 500 19 LEU A 26 -154.09 -98.62 REMARK 500 20 ALA A 5 71.88 -100.37 REMARK 500 20 LEU A 26 -156.08 -97.74 REMARK 500 20 THR A 42 96.84 -64.41 REMARK 500 20 ASP A 51 43.29 -105.41 REMARK 500 20 ASP A 99 -160.51 -100.89 REMARK 500 21 THR A 42 95.43 -67.93 REMARK 500 22 SER A 10 38.29 -86.26 REMARK 500 22 LEU A 13 -169.38 -116.34 REMARK 500 22 ASP A 51 41.52 -140.02 REMARK 500 23 SER A 10 30.30 -98.60 REMARK 500 23 ALA A 50 -75.85 -105.04 REMARK 500 23 TRP A 83 -61.48 -108.83 REMARK 500 24 ASP A 58 -179.68 -69.23 REMARK 500 25 THR A 4 73.79 -108.78 REMARK 500 25 ALA A 50 -53.14 -147.26 REMARK 500 26 ASP A 51 32.16 -140.61 REMARK 500 26 ASP A 58 -163.88 -72.42 REMARK 500 27 TRP A 39 98.97 -63.97 REMARK 500 27 ASP A 51 48.83 -141.09 REMARK 500 28 SER A 10 31.24 -98.04 REMARK 500 29 LEU A 13 -169.73 -105.42 REMARK 500 29 ASP A 51 33.90 -96.69 REMARK 500 30 SER A 10 41.02 -89.78 REMARK 500 30 CYS A 37 98.60 -61.79 REMARK 500 30 THR A 42 96.38 -64.78 REMARK 500 30 ASP A 51 58.52 -164.11 REMARK 500 31 SER A 14 -165.16 -106.28 REMARK 500 31 ALA A 50 -67.91 -124.22 REMARK 500 31 ASP A 51 39.93 -83.15 REMARK 500 32 ALA A 5 76.89 -101.16 REMARK 500 32 CYS A 37 97.22 -65.25 REMARK 500 32 THR A 42 87.52 -68.78 REMARK 500 32 ALA A 50 -62.01 -92.18 REMARK 500 32 ASP A 51 65.94 -104.50 REMARK 500 33 SER A 10 37.04 -94.32 REMARK 500 33 ALA A 50 -66.71 -108.98 REMARK 500 33 ASN A 103 -169.41 -114.31 REMARK 500 34 LEU A 26 -155.54 -93.21 REMARK 500 34 ASP A 51 35.94 -157.32 REMARK 500 35 THR A 6 65.39 -103.39 REMARK 500 35 LEU A 26 -156.84 -95.18 REMARK 500 35 GLN A 36 47.82 -86.74 REMARK 500 35 CYS A 37 96.60 -62.35 REMARK 500 35 ASP A 99 -169.15 -76.76 REMARK 500 36 ASN A 103 -169.44 -126.13 REMARK 500 37 THR A 42 94.45 -62.48 REMARK 500 38 LEU A 26 -160.38 -100.06 REMARK 500 38 THR A 42 94.07 -59.88 REMARK 500 38 ALA A 50 -69.20 -101.94 REMARK 500 38 ASP A 51 44.68 -79.67 REMARK 500 38 ASP A 58 -177.24 -69.77 REMARK 500 38 ASP A 99 -159.56 -87.49 REMARK 500 39 SER A 10 39.33 -86.96 REMARK 500 39 GLN A 36 42.20 -90.34 REMARK 500 39 PRO A 49 30.49 -78.16 REMARK 500 39 ASP A 51 19.92 -146.16 REMARK 500 39 ASN A 103 -163.41 -117.45 REMARK 500 40 SER A 10 48.21 -81.16 REMARK 500 40 ASP A 99 -168.58 -78.82 REMARK 500 41 CYS A 37 96.57 -67.49 REMARK 500 41 ASP A 99 -166.43 -79.10 REMARK 500 42 ASP A 51 33.13 -148.20 REMARK 500 43 SER A 10 39.06 -86.30 REMARK 500 44 SER A 10 35.06 -90.05 REMARK 500 45 SER A 10 38.05 -97.00 REMARK 500 45 ASP A 51 32.01 -99.66 REMARK 500 46 ASP A 99 -167.44 -79.53 REMARK 500 47 SER A 10 49.43 -93.94 REMARK 500 47 CYS A 37 98.48 -67.97 REMARK 500 47 ASP A 51 52.47 -110.80 REMARK 500 48 ALA A 28 106.44 -59.63 REMARK 500 48 TRP A 39 106.81 -59.56 REMARK 500 49 SER A 10 37.97 -96.30 REMARK 500 49 ASN A 103 -151.24 -108.35 REMARK 500 50 SER A 10 51.56 -105.50 REMARK 500 50 THR A 42 98.03 -61.57 REMARK 500 50 ASP A 51 23.63 -140.88 REMARK 500 50 TRP A 83 -58.14 -122.70 REMARK 500 51 ASP A 79 -32.40 -179.59 REMARK 500 51 ASP A 99 -146.89 -85.62 REMARK 500 51 ASN A 103 -165.91 -115.85 REMARK 500 52 PRO A 3 -168.73 -77.69 REMARK 500 52 ASN A 103 -156.06 -130.20 REMARK 500 53 SER A 10 43.89 -83.87 REMARK 500 53 ALA A 50 -65.59 -106.80 REMARK 500 54 ASP A 99 -151.23 -86.77 REMARK 500 56 LEU A 26 -150.99 -95.23 REMARK 500 56 THR A 42 94.01 -67.88 REMARK 500 56 ALA A 50 -63.69 -100.24 REMARK 500 56 ASP A 51 32.35 -90.85 REMARK 500 57 LEU A 13 -169.53 -101.79 REMARK 500 57 LEU A 26 -166.66 -113.33 REMARK 500 57 THR A 42 95.43 -64.71 REMARK 500 57 ASN A 103 -162.33 -118.03 REMARK 500 58 SER A 10 49.17 -81.80 REMARK 500 58 THR A 42 99.29 -64.93 REMARK 500 58 ASP A 99 -150.98 -81.42 REMARK 500 REMARK 500 REMARK: NULL

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLN A 114

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J5H RELATED DB: PDB REMARK 900 NEOCARZINOSTATIN APO-PROTEIN REMARK 900 RELATED ID: 1J5I RELATED DB: PDB REMARK 900 APO-PROTEIN BOUND TO A SYNTHETIC CHROMOPHORE REMARK 900 RELATED ID: 2G0K RELATED DB: PDB

DBREF 2G0L A 1 113 UNP P0A3R9 NCZS_STRCZ 35 147

SEQADV 2G0L HIS A -8 UNP P0A3R9 EXPRESSION TAG SEQADV 2G0L HIS A -7 UNP P0A3R9 EXPRESSION TAG SEQADV 2G0L HIS A -6 UNP P0A3R9 EXPRESSION TAG SEQADV 2G0L HIS A -5 UNP P0A3R9 EXPRESSION TAG SEQADV 2G0L HIS A -4 UNP P0A3R9 EXPRESSION TAG SEQADV 2G0L HIS A -3 UNP P0A3R9 EXPRESSION TAG SEQADV 2G0L LEU A -2 UNP P0A3R9 CLONING ARTIFACT SEQADV 2G0L GLN A -1 UNP P0A3R9 CLONING ARTIFACT SEQADV 2G0L GLY A 0 UNP P0A3R9 CLONING ARTIFACT

SEQRES 1 A 122 HIS HIS HIS HIS HIS HIS LEU GLN GLY ALA ALA PRO THR SEQRES 2 A 122 ALA THR VAL THR PRO SER SER GLY LEU SER ASP GLY THR SEQRES 3 A 122 VAL VAL LYS VAL ALA GLY ALA GLY LEU GLN ALA GLY THR SEQRES 4 A 122 ALA TYR ASP VAL GLY GLN CYS ALA TRP VAL ASP THR GLY SEQRES 5 A 122 VAL LEU ALA CYS ASN PRO ALA ASP PHE SER SER VAL THR SEQRES 6 A 122 ALA ASP ALA ASN GLY SER ALA SER THR SER LEU THR VAL SEQRES 7 A 122 ARG ARG SER PHE GLU GLY PHE LEU PHE ASP GLY THR ARG SEQRES 8 A 122 TRP GLY THR VAL ASP CYS THR THR ALA ALA CYS GLN VAL SEQRES 9 A 122 GLY LEU SER ASP ALA ALA GLY ASN GLY PRO GLU GLY VAL SEQRES 10 A 122 ALA ILE SER PHE ASN

HET FLN A 114 27

HETNAM FLN 2-PHENYL-4H-CHROMEN-4-ONE

HETSYN FLN FLAVONE

FORMUL 2 FLN C15 H10 O2

SHEET 1 A 3 THR A 4 THR A 8 0 SHEET 2 A 3 VAL A 18 ALA A 24 -1 O LYS A 20 N THR A 8 SHEET 3 A 3 SER A 62 THR A 68 -1 O LEU A 67 N VAL A 19 SHEET 1 B 4 VAL A 55 THR A 56 0 SHEET 2 B 4 ALA A 31 GLY A 35 -1 N TYR A 32 O VAL A 55 SHEET 3 B 4 GLN A 94 ASP A 99 -1 O GLY A 96 N GLY A 35 SHEET 4 B 4 VAL A 108 ALA A 109 -1 O VAL A 108 N VAL A 95 SHEET 1 C 2 ALA A 38 ASP A 41 0 SHEET 2 C 2 VAL A 44 ALA A 46 -1 O VAL A 44 N VAL A 40 SHEET 1 D 2 SER A 72 PHE A 76 0 SHEET 2 D 2 ARG A 82 ASP A 87 -1 O GLY A 84 N GLY A 75

SSBOND 1 CYS A 37 CYS A 47 1555 1555 2.03 SSBOND 2 CYS A 88 CYS A 93 1555 1555 2.03

SITE 1 AC1 11 CYS A 37 LEU A 45 ALA A 46 CYS A 47 SITE 2 AC1 11 PHE A 76 LEU A 77 PHE A 78 GLN A 94 SITE 3 AC1 11 GLY A 96 LEU A 97 SER A 98

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000