10 20 30 40 50 60 70 80 2FVF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER BIOSYNTHETIC PROTEIN 30-JAN-06 2FVF
TITLE STRUCTURE OF 10:0-ACP (PROTEIN WITH DOCKED FATTY ACID)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL CARRIER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPINACIA OLERACEA; SOURCE 3 ORGANISM_COMMON: SPINACH; SOURCE 4 ORGANISM_TAXID: 3562; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSACP-2T
KEYWDS 4-HELIX BUNDLE, BIOSYNTHETIC PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR G.A.ZORNETZER,B.G.FOX,J.L.MARKLEY
REVDAT 3 24-FEB-09 2FVF 1 VERSN REVDAT 2 02-MAY-06 2FVF 1 JRNL REVDAT 1 11-APR-06 2FVF 0
JRNL AUTH G.A.ZORNETZER,B.G.FOX,J.L.MARKLEY JRNL TITL SOLUTION STRUCTURES OF SPINACH ACYL CARRIER JRNL TITL 2 PROTEIN WITH DECANOATE AND STEARATE JRNL REF BIOCHEMISTRY V. 45 5217 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16618110 JRNL DOI 10.1021/BI052062D
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.12 REMARK 3 AUTHORS : C.D.SCHWIETERS,J.J.KUSZEWSKI,N.TJANDRA,G.M.CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2FVF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-06. REMARK 100 THE RCSB ID CODE IS RCSB036358.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 287 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2 MM PROTEIN, 10 MM MES PH REMARK 210 6.1, 100 MM NACL, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, F1 REMARK 210 FILTERED NOESY-15N HSQC, F1 REMARK 210 FILTERED NOESY-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE, SPARKY REMARK 210 3.111, CYANA 2.1 REMARK 210 METHOD USED : INITIAL STRUCTURE FROM REMARK 210 TORSION ANGLE DYNAMICS (IN REMARK 210 CYANA). FATTY ACID AND REMARK 210 PHOSPHOPANTETHEINE WERE ADDED REMARK 210 AND DOCKED USING AMBIGUOUS REMARK 210 DISTANCE RESTRAINTS IN XPLOR- REMARK 210 NIH REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH LOWEST ENERGY REMARK 210 IN A CLUSTERING OF THE FATTY REMARK 210 ACID STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 SER A 38 OG
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 18 -161.34 -175.47 REMARK 500 1 ALA A 36 108.87 -51.86 REMARK 500 1 ALA A 61 24.29 -73.48 REMARK 500 1 SER A 65 -30.64 -130.20 REMARK 500 2 ALA A 18 -167.68 -174.25 REMARK 500 2 ALA A 21 -62.19 -90.11 REMARK 500 3 ALA A 18 -176.02 176.59 REMARK 500 3 ALA A 61 26.44 -76.53 REMARK 500 4 ALA A 18 -157.59 -175.70 REMARK 500 4 ALA A 36 109.69 -59.99 REMARK 500 5 ALA A 18 -162.26 -174.52 REMARK 500 5 ALA A 36 108.99 -54.85 REMARK 500 5 ILE A 54 -168.13 -121.05 REMARK 500 5 ALA A 61 23.94 -76.51 REMARK 500 5 LYS A 80 -72.73 -74.83 REMARK 500 5 LYS A 81 -169.54 43.57 REMARK 500 6 ALA A 18 -172.37 175.62 REMARK 500 6 ALA A 36 108.94 -54.62 REMARK 500 6 ILE A 54 -167.70 -121.19 REMARK 500 6 LYS A 81 -92.18 39.48 REMARK 500 7 ALA A 18 -152.02 -174.13 REMARK 500 7 ALA A 36 109.18 -58.28 REMARK 500 7 ILE A 54 -167.11 -126.15 REMARK 500 7 LYS A 81 -169.73 -72.60 REMARK 500 8 ALA A 18 -171.47 176.38 REMARK 500 9 ALA A 18 -167.97 -179.35 REMARK 500 10 ALA A 18 -170.77 179.37 REMARK 500 10 ALA A 36 108.33 -52.20 REMARK 500 10 ILE A 54 -167.62 -125.24 REMARK 500 10 LYS A 81 -171.93 44.58 REMARK 500 11 ALA A 18 -176.31 174.19 REMARK 500 11 ILE A 54 -168.14 -125.10 REMARK 500 12 ALA A 18 -174.67 178.47 REMARK 500 12 LYS A 81 -77.70 58.26 REMARK 500 13 ALA A 18 -171.66 179.91 REMARK 500 13 ASP A 37 -169.69 -101.25 REMARK 500 13 LYS A 80 -76.31 -67.29 REMARK 500 13 LYS A 81 -169.35 43.92 REMARK 500 14 ALA A 18 -161.84 -173.80 REMARK 500 14 ALA A 36 108.17 -51.42 REMARK 500 14 ILE A 54 -168.15 -120.13 REMARK 500 15 LYS A 3 -18.11 -49.11 REMARK 500 15 ALA A 18 -169.87 -177.23 REMARK 500 15 ALA A 36 109.27 -55.57 REMARK 500 15 ILE A 54 -167.54 -126.87 REMARK 500 16 ALA A 18 -172.41 -177.27 REMARK 500 16 ALA A 21 -62.11 -95.70 REMARK 500 16 ILE A 54 -168.82 -108.17 REMARK 500 17 ALA A 18 -172.99 176.58 REMARK 500 17 ALA A 36 108.33 -55.57 REMARK 500 17 ASP A 63 1.36 -62.46 REMARK 500 17 LYS A 81 171.79 -52.28 REMARK 500 18 ALA A 18 -177.54 175.42 REMARK 500 18 ALA A 61 23.06 -74.75 REMARK 500 18 LYS A 80 -11.98 -49.05 REMARK 500 19 ALA A 18 -171.18 178.61 REMARK 500 19 ALA A 36 109.30 -49.95 REMARK 500 20 ALA A 18 -170.65 180.00 REMARK 500 20 ALA A 36 108.88 -57.59 REMARK 500 20 LYS A 80 -72.19 -64.89 REMARK 500 20 LYS A 81 -168.19 42.22 REMARK 500 REMARK 500 REMARK: NULL
REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1 DKA A 102 REMARK 610 2 DKA A 102 REMARK 610 3 DKA A 102 REMARK 610 4 DKA A 102 REMARK 610 5 DKA A 102 REMARK 610 6 DKA A 102 REMARK 610 7 DKA A 102 REMARK 610 8 DKA A 102 REMARK 610 9 DKA A 102 REMARK 610 10 DKA A 102 REMARK 610 11 DKA A 102 REMARK 610 12 DKA A 102 REMARK 610 13 DKA A 102 REMARK 610 14 DKA A 102 REMARK 610 15 DKA A 102 REMARK 610 16 DKA A 102 REMARK 610 17 DKA A 102 REMARK 610 18 DKA A 102 REMARK 610 19 DKA A 102 REMARK 610 20 DKA A 102
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PNS A 101 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DKA A 102
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6962 RELATED DB: BMRB REMARK 900 10:0-ACP RESONANCE ASSIGNMENTS REMARK 900 RELATED ID: 6790 RELATED DB: BMRB REMARK 900 18:0-ACP RESONANCE ASSIGNMENTS REMARK 900 RELATED ID: 2AVA RELATED DB: PDB REMARK 900 18:0-ACP STRUCTURE (PROTEIN ONLY) REMARK 900 RELATED ID: 2FVA RELATED DB: PDB REMARK 900 18:0-ACP STRUCTURE (PROTEIN AND DOCKED FATTY ACID) REMARK 900 RELATED ID: 2FVE RELATED DB: PDB REMARK 900 10:0-ACP STRUCTURE (PROTEIN ONLY)
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE PROTEIN HAS 100% MATCH REMARK 999 TO THE SEQUENCE FROM GB ENTRY CAA31207 REMARK 999 (ACP-I POLYPEPTIDE, SYNTHETIC CONSTRUCT).
DBREF 2FVF A 1 82 UNP P07854 ACP1_SPIOL 57 138
SEQRES 1 A 82 ALA LYS LYS GLU THR ILE ASP LYS VAL SER ASP ILE VAL SEQRES 2 A 82 LYS GLU LYS LEU ALA LEU GLY ALA ASP VAL VAL VAL THR SEQRES 3 A 82 ALA ASP SER GLU PHE SER LYS LEU GLY ALA ASP SER LEU SEQRES 4 A 82 ASP THR VAL GLU ILE VAL MET ASN LEU GLU GLU GLU PHE SEQRES 5 A 82 GLY ILE ASN VAL ASP GLU ASP LYS ALA GLN ASP ILE SER SEQRES 6 A 82 THR ILE GLN GLN ALA ALA ASP VAL ILE GLU GLY LEU LEU SEQRES 7 A 82 GLU LYS LYS ALA
HET PNS A 101 42 HET DKA A 102 30
HETNAM PNS 4'-PHOSPHOPANTETHEINE HETNAM DKA DECANOIC ACID
FORMUL 2 PNS C11 H23 N2 O7 P S FORMUL 3 DKA C10 H20 O2
HELIX 1 1 LYS A 2 ALA A 18 1 17 HELIX 2 2 GLU A 30 GLY A 35 1 6 HELIX 3 3 ASP A 37 GLY A 53 1 17 HELIX 4 4 ASP A 59 ASP A 63 5 5 HELIX 5 5 THR A 66 LYS A 81 1 16
LINK CB SER A 38 O23 PNS A 101 1555 1555 1.43 LINK S44 PNS A 101 C1 DKA A 102 1555 1555 1.74
SITE 1 AC1 4 ASP A 37 SER A 38 LEU A 39 DKA A 102 SITE 1 AC2 2 THR A 41 PNS A 101
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000