10 20 30 40 50 60 70 80 2FSC - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL PROTEIN 21-JAN-06 2FSC
TITLE THEORETICAL MODEL OF YEAST CENTROMERIC H3 HISTONE VARIANT TITLE 2 CSE4
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMATIN-ASSOCIATED PROTEIN CSE4; COMPND 3 CHAIN: A
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST
KEYWDS CSE4, CENH3, CENTROMERIC HISTONE VARIANT, H3-VARIANT
EXPDTA THEORETICAL MODEL
AUTHOR K.BLOOM,S.SHARMA,N.V.DOKHOLYAN
REVDAT 1 23-MAY-06 2FSC 0
JRNL AUTH K.BLOOM,S.SHARMA,N.V.DOKHOLYAN JRNL TITL THE PATH OF DNA IN THE KINETOCHORE. JRNL REF CURR.BIOL. V. 16 R276 2006 JRNL REFN ASTM CUBLE2 UK ISSN 0960-9822
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HOMOLOGY MODELLING OF CSE4 BASED REMARK 3 UPON THE COORDINATES OF YEAST H3 HISTONE 1ID3-A (X-RAY REMARK 3 DIFFRACTION) AND MODEL OF CSE4 N-TERMINAL DOMAIN USING 3D-JURY REMARK 3 META SERVER. THERE ARE SOME CLOSE CONTACTS IN THIS MODEL AND REMARK 3 ARE LISTED IN REMARK 500.
REMARK 4 REMARK 4 2FSC COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-2006. REMARK 100 THE RCSB ID CODE IS RCSB036252.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: HOMOLGY MODELLING EXPERIMENT: - THIS MODEL IS BASED REMARK 220 UPON THE COORDINATES OF YEAST H3 HISTONE FROM PDB 1ID3 REMARK 220 (X-RAY DIFFRACTION) FOLLOWED BY INSIGHTII HOMOLOGY REMARK 220 MODELLING OF N-TERMINAL DOMAIN.
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 CB VAL A 128 NZ LYS A 130 1.02 REMARK 500 CG1 VAL A 128 NZ LYS A 130 1.23 REMARK 500 O LYS A 130 CD PRO A 134 1.35 REMARK 500 CB VAL A 128 CE LYS A 130 1.40 REMARK 500 CG1 VAL A 128 CE LYS A 130 1.53 REMARK 500 O LYS A 126 CB LYS A 130 1.74 REMARK 500 CG2 VAL A 128 NZ LYS A 130 1.84 REMARK 500 O PRO A 134 CB GLU A 136 1.89 REMARK 500 O LYS A 130 CG PRO A 134 1.91 REMARK 500 C VAL A 128 CE LYS A 130 1.95 REMARK 500 C VAL A 128 CD LYS A 130 1.97 REMARK 500 O SER A 135 N LEU A 137 1.98 REMARK 500 C VAL A 128 CG LYS A 130 2.00 REMARK 500 CB VAL A 128 CD LYS A 130 2.00 REMARK 500 CA VAL A 128 CE LYS A 130 2.06 REMARK 500 CA VAL A 128 CD LYS A 130 2.09 REMARK 500 O THR A 133 OE1 GLU A 136 2.09 REMARK 500 O LYS A 130 OG1 THR A 133 2.16 REMARK 500 O LEU A 125 CD LYS A 130 2.17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 130 C - N - CA ANGL. DEV. =-15.4 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 75 173.50 116.34 REMARK 500 GLU A 136 -48.75 80.88 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 135 GLU A 136 120.03
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ID3 RELATED DB: PDB REMARK 900 STRUCTURE OF YEAST NUCLEOSOME CORE PARTICLE.
DBREF 2FSC A 1 228 UNP P36012 CSE4_YEAST 1 228
SEQRES 1 A 228 MET SER SER LYS GLN GLN TRP VAL SER SER ALA ILE GLN SEQRES 2 A 228 SER ASP SER SER GLY ARG SER LEU SER ASN VAL ASN ARG SEQRES 3 A 228 LEU ALA GLY ASP GLN GLN SER ILE ASN ASP ARG ALA LEU SEQRES 4 A 228 SER LEU LEU GLN ARG THR ARG ALA THR LYS ASN LEU PHE SEQRES 5 A 228 PRO ARG ARG GLU GLU ARG ARG ARG TYR GLU SER SER LYS SEQRES 6 A 228 SER ASP LEU ASP ILE GLU THR ASP TYR GLU ASP GLN ALA SEQRES 7 A 228 GLY ASN LEU GLU ILE GLU THR GLU ASN GLU GLU GLU ALA SEQRES 8 A 228 GLU MET GLU THR GLU VAL PRO ALA PRO VAL ARG THR HIS SEQRES 9 A 228 SER TYR ALA LEU ASP ARG TYR VAL ARG GLN LYS ARG ARG SEQRES 10 A 228 GLU LYS GLN ARG LYS GLN SER LEU LYS ARG VAL GLU LYS SEQRES 11 A 228 LYS TYR THR PRO SER GLU LEU ALA LEU TYR GLU ILE ARG SEQRES 12 A 228 LYS TYR GLN ARG SER THR ASP LEU LEU ILE SER LYS ILE SEQRES 13 A 228 PRO PHE ALA ARG LEU VAL LYS GLU VAL THR ASP GLU PHE SEQRES 14 A 228 THR THR LYS ASP GLN ASP LEU ARG TRP GLN SER MET ALA SEQRES 15 A 228 ILE MET ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL SEQRES 16 A 228 GLY LEU LEU GLU HIS THR ASN LEU LEU ALA LEU HIS ALA SEQRES 17 A 228 LYS ARG ILE THR ILE MET LYS LYS ASP MET GLN LEU ALA SEQRES 18 A 228 ARG ARG ILE ARG GLY GLN PHE
HELIX 1 1 SER A 20 ARG A 26 1 7 HELIX 2 2 SER A 40 THR A 48 1 9 HELIX 3 3 PHE A 52 GLU A 62 1 11 HELIX 4 4 LEU A 81 VAL A 97 1 17 HELIX 5 5 ARG A 110 LYS A 130 1 21 HELIX 6 6 LYS A 131 GLU A 136 1 6 HELIX 7 7 GLU A 136 SER A 148 1 13 HELIX 8 8 SER A 154 THR A 170 1 17 HELIX 9 9 GLN A 179 ALA A 208 1 30 HELIX 10 10 MET A 214 GLY A 226 1 13
CISPEP 1 GLU A 129 LYS A 130 0 0.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000