10 20 30 40 50 60 70 80 2FRY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 20-JAN-06 2FRY
TITLE SOLUTION STRUCTURE OF THE THIRD SH3 DOMAIN OF HUMAN NCK2 TITLE 2 ADAPTOR PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOPLASMIC PROTEIN NCK2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3_3; COMPND 5 SYNONYM: NCK ADAPTOR PROTEIN 2, SH2/SH3 ADAPTOR PROTEIN COMPND 6 NCK-BETA, NCK-2; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32-A
KEYWDS SH3, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR J.LIU
REVDAT 2 24-FEB-09 2FRY 1 VERSN REVDAT 1 20-JUN-06 2FRY 0
JRNL AUTH J.LIU,M.LI,X.RAN,J.S.FAN,J.SONG JRNL TITL STRUCTURAL INSIGHT INTO THE BINDING DIVERSITY JRNL TITL 2 BETWEEN THE HUMAN NCK2 SH3 DOMAINS AND JRNL TITL 3 PROLINE-RICH PROTEINS JRNL REF BIOCHEMISTRY V. 45 7171 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16752908 JRNL DOI 10.1021/BI060091Y
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 812 RESTRAINTS, 722 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 90 DIHEDRAL ANGLE RESTRAINTS
REMARK 4 REMARK 4 2FRY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JAN-06. REMARK 100 THE RCSB ID CODE IS RCSB036238.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50MM PHOSPHATE BUFFER, 90% REMARK 210 H2O, 10% D2O, 0.01% NAN3, 10MM REMARK 210 DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2004 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 8 -34.66 -131.71 REMARK 500 1 VAL A 14 -55.31 -132.54 REMARK 500 1 THR A 15 158.40 -46.17 REMARK 500 1 GLU A 25 -147.13 -94.91 REMARK 500 1 PRO A 37 177.14 -44.43 REMARK 500 2 PRO A 10 175.42 -46.10 REMARK 500 2 VAL A 14 -47.88 -132.47 REMARK 500 2 THR A 15 172.50 -55.38 REMARK 500 2 GLU A 17 32.77 -92.73 REMARK 500 2 GLU A 22 99.33 -69.40 REMARK 500 2 GLU A 38 -75.46 -114.55 REMARK 500 2 PRO A 53 87.36 -60.43 REMARK 500 3 PRO A 10 151.72 -44.11 REMARK 500 3 VAL A 14 89.58 -173.06 REMARK 500 3 GLU A 22 -156.03 -63.85 REMARK 500 3 ILE A 30 -77.11 -79.31 REMARK 500 3 GLU A 38 -77.09 -121.75 REMARK 500 3 LYS A 54 -11.48 -45.24 REMARK 500 4 LEU A 8 -35.81 -131.09 REMARK 500 4 GLU A 22 -157.39 -63.61 REMARK 500 4 PRO A 37 -75.40 -42.17 REMARK 500 4 GLU A 38 17.89 -175.41 REMARK 500 5 LEU A 8 -40.02 -131.76 REMARK 500 5 PRO A 10 -176.27 -54.59 REMARK 500 5 VAL A 14 -31.36 -144.86 REMARK 500 5 GLU A 17 32.68 -98.63 REMARK 500 5 GLU A 22 98.32 -64.94 REMARK 500 5 PRO A 37 79.36 -61.75 REMARK 500 5 GLU A 38 -83.71 -119.30 REMARK 500 5 PRO A 53 82.14 -60.79 REMARK 500 6 LEU A 8 -44.08 -131.31 REMARK 500 6 VAL A 14 -45.16 -135.88 REMARK 500 6 GLU A 18 -171.67 -54.54 REMARK 500 6 ILE A 30 -81.99 -81.23 REMARK 500 6 PRO A 33 62.36 -66.90 REMARK 500 6 GLU A 38 -98.69 -152.84 REMARK 500 7 LEU A 8 -41.24 -131.50 REMARK 500 7 PRO A 10 -166.12 -54.45 REMARK 500 7 VAL A 14 55.21 -145.15 REMARK 500 7 GLU A 18 -168.64 -124.85 REMARK 500 7 LEU A 19 148.94 -178.85 REMARK 500 7 ILE A 30 -78.37 -86.53 REMARK 500 7 GLU A 38 -88.07 -102.76 REMARK 500 7 PRO A 53 88.13 -60.55 REMARK 500 8 LEU A 8 -40.66 -131.51 REMARK 500 8 VAL A 14 -42.69 -173.34 REMARK 500 8 PRO A 33 92.70 -59.02 REMARK 500 8 GLU A 38 -94.36 -98.53 REMARK 500 9 PRO A 10 173.38 -46.68 REMARK 500 9 VAL A 14 -41.36 -167.57 REMARK 500 9 GLU A 17 33.19 -96.07 REMARK 500 9 GLU A 22 -156.68 -64.06 REMARK 500 9 ILE A 30 -67.99 -90.79 REMARK 500 9 GLU A 38 -83.79 -103.33 REMARK 500 10 PRO A 10 -165.90 -54.56 REMARK 500 10 ILE A 30 -84.46 -81.59 REMARK 500 10 PRO A 37 -76.26 -40.41 REMARK 500 10 GLU A 38 14.43 -161.18 REMARK 500 10 PRO A 53 92.96 -62.89 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FRW RELATED DB: PDB REMARK 900 THE SECOND SH3 DOMAIN OF THE SAME PROTEIN
DBREF 2FRY A 3 61 UNP O43639 NCK2_HUMAN 198 256
SEQADV 2FRY GLY A 1 UNP O43639 CLONING ARTIFACT SEQADV 2FRY SER A 2 UNP O43639 CLONING ARTIFACT
SEQRES 1 A 61 GLY SER HIS VAL VAL GLN THR LEU TYR PRO PHE SER SER SEQRES 2 A 61 VAL THR GLU GLU GLU LEU ASN PHE GLU LYS GLY GLU THR SEQRES 3 A 61 MET GLU VAL ILE GLU LYS PRO GLU ASN ASP PRO GLU TRP SEQRES 4 A 61 TRP LYS CYS LYS ASN ALA ARG GLY GLN VAL GLY LEU VAL SEQRES 5 A 61 PRO LYS ASN TYR VAL VAL VAL LEU SER
HELIX 1 1 PRO A 53 ASN A 55 5 3
SHEET 1 A 3 THR A 26 MET A 27 0 SHEET 2 A 3 VAL A 5 THR A 7 -1 N VAL A 5 O MET A 27 SHEET 3 A 3 VAL A 57 VAL A 59 -1 O VAL A 58 N GLN A 6 SHEET 1 B 2 TRP A 40 LYS A 43 0 SHEET 2 B 2 VAL A 49 VAL A 52 -1 O VAL A 52 N TRP A 40
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000