10 20 30 40 50 60 70 80 2FF0 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HORMONE/GROWTH FACTOR/DNA 17-DEC-05 2FF0
TITLE SOLUTION STRUCTURE OF STEROIDOGENIC FACTOR 1 DNA BINDING TITLE 2 DOMAIN BOUND TO ITS TARGET SEQUENCE IN THE INHIBIN ALPHA- TITLE 3 SUBUNIT PROMOTER
COMPND MOL_ID: 1; COMPND 2 MOLECULE: STEROIDOGENIC FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN; COMPND 5 SYNONYM: STF-1, SF-1, ADRENAL 4 BINDING PROTEIN, STEROID COMPND 6 HORMONE RECEPTOR AD4BP, FUSHI TARAZU FACTOR HOMOLOG 1, COMPND 7 EMBRYONAL LTR BINDING PROTEIN, ELP, EMBRYONAL LONG COMPND 8 TERMINAL REPEAT- BINDING PROTEIN, STEROID HYDROXYLASE COMPND 9 POSITIVE REGULATOR; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: GGCTCAGGGCCACAG; COMPND 13 CHAIN: B; COMPND 14 FRAGMENT: INHIBIN ALPHA-SUBUNIT PROMOTER; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: CTGTGGCCCTGAGCC; COMPND 18 CHAIN: C; COMPND 19 FRAGMENT: INHIBIN ALPHA-SUBUNIT PROMOTER; COMPND 20 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NR5A1, FTZF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE DNA SEQUENCE WAS SYNTHESIZED VIA SOURCE 14 AUTOMATED METHODS; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: THE DNA SEQUENCE WAS SYNTHESIZED VIA SOURCE 18 AUTOMATED METHODS
KEYWDS NUCLEAR HORMONE RECEPTOR, PROTEIN-DNA COMPLEX, MONOMERIC KEYWDS 2 RECEPTOR-DNA COMPLEX, HORMONE/GROWTH FACTOR/DNA COMPLEX
EXPDTA SOLUTION NMR
NUMMDL 16
AUTHOR T.H.LITTLE,Y.ZHANG,C.K.MATULIS,J.WECK,Z.ZHANG, AUTHOR 2 A.RAMACHANDRAN,K.E.MAYO,I.RADHAKRISHNAN
REVDAT 2 24-FEB-09 2FF0 1 VERSN REVDAT 1 11-APR-06 2FF0 0
JRNL AUTH T.H.LITTLE,Y.ZHANG,C.K.MATULIS,J.WECK,Z.ZHANG, JRNL AUTH 2 A.RAMACHANDRAN,K.E.MAYO,I.RADHAKRISHNAN JRNL TITL SEQUENCE-SPECIFIC DEOXYRIBONUCLEIC ACID (DNA) JRNL TITL 2 RECOGNITION BY STEROIDOGENIC FACTOR 1: A HELIX AT JRNL TITL 3 THE CARBOXY TERMINUS OF THE DNA BINDING DOMAIN IS JRNL TITL 4 NECESSARY FOR COMPLEX STABILITY. JRNL REF MOL.ENDOCRINOL. V. 20 831 2006 JRNL REFN ISSN 0888-8809 JRNL PMID 16339274 JRNL DOI 10.1210/ME.2005-0384
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, CNS 1.1 REMARK 3 AUTHORS : NILGES ET AL. (ARIA), BRUNGER ET AL. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2FF0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB035799.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 20 MM TRIS ACETATE, 50 UM REMARK 210 ZNCL2, 2 MM DTT, 1% GLYCEROL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : U-15N-STEROIDOGENIC FACTOR 1 REMARK 210 DBD:NA-DUPLEX DNA COMPLEX; U- REMARK 210 15N,U-13C-STEROIDOGENIC FACTOR REMARK 210 1 DBD:NA-DUPLEX DNA COMPLEX; U REMARK 210 -15N,U-13C-STEROIDOGENIC REMARK 210 FACTOR 1 DBD:NA-DUPLEX DNA REMARK 210 COMPLEX REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 ALIPHATIC_13C-SEPARATED_NOESY, 3D_AROMATIC_13C-SEPARATED_ REMARK 210 NOESY, 2D_15N,13C-DOUBLE-HALF-FILTERED_NOESY, 3D_13C-FILTERED_ REMARK 210 13C-EDITED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 98.0, VNMR 6.1 REMARK 210 METHOD USED : SIMULATED ANNEALING AND REMARK 210 CARTESIAN MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST RESTRAINT ENERGIES, REMARK 210 RESTRAINT VIOLATIONS, AND RMS REMARK 210 DEVIATIONS FROM IDEAL COVALENT REMARK 210 GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 15 -81.88 -104.03 REMARK 500 1 SER A 52 86.91 46.81 REMARK 500 1 ASP A 86 -76.47 -55.28 REMARK 500 1 ARG A 87 -34.53 165.82 REMARK 500 2 TYR A 25 -71.60 73.03 REMARK 500 2 GLU A 51 -91.62 59.71 REMARK 500 2 GLN A 53 -28.23 69.86 REMARK 500 2 SER A 54 43.19 -105.32 REMARK 500 2 ARG A 87 -16.08 81.89 REMARK 500 3 GLU A 51 -149.18 -102.06 REMARK 500 3 GLN A 53 -45.80 71.02 REMARK 500 3 ASP A 58 -163.64 -120.93 REMARK 500 3 ASP A 86 -80.42 -65.56 REMARK 500 3 ARG A 87 113.08 -179.67 REMARK 500 3 ASN A 93 -138.59 -110.77 REMARK 500 4 VAL A 15 -69.88 -100.77 REMARK 500 4 TYR A 23 -151.61 57.06 REMARK 500 4 HIS A 24 -29.48 127.06 REMARK 500 4 TYR A 25 -151.69 -138.62 REMARK 500 4 LEU A 27 -178.35 176.55 REMARK 500 4 GLU A 51 -93.08 -91.51 REMARK 500 4 GLN A 53 -38.42 72.32 REMARK 500 4 SER A 54 72.45 -101.85 REMARK 500 4 ARG A 64 -62.63 -90.94 REMARK 500 4 ASP A 86 -73.35 -74.85 REMARK 500 4 ARG A 87 -91.55 -179.75 REMARK 500 4 MET A 88 86.70 45.82 REMARK 500 4 ASN A 93 -70.53 -164.14 REMARK 500 4 GLN A 107 -68.73 -101.33 REMARK 500 4 GLN A 108 -177.39 58.28 REMARK 500 5 TYR A 25 -82.96 65.74 REMARK 500 5 THR A 50 -76.27 65.36 REMARK 500 5 SER A 52 72.39 47.46 REMARK 500 5 SER A 54 79.59 -113.89 REMARK 500 5 ASN A 93 -73.87 -135.57 REMARK 500 6 THR A 50 -43.85 72.29 REMARK 500 6 SER A 52 -27.90 -163.06 REMARK 500 6 GLN A 53 -47.59 77.64 REMARK 500 6 ILE A 57 99.68 -64.13 REMARK 500 6 ASP A 58 -161.71 -125.73 REMARK 500 6 VAL A 83 109.34 -57.13 REMARK 500 6 ASN A 93 -38.57 -157.10 REMARK 500 6 GLN A 108 -72.65 -62.74 REMARK 500 6 LYS A 109 117.76 -174.34 REMARK 500 7 PRO A 14 11.87 -68.90 REMARK 500 7 THR A 50 173.51 53.86 REMARK 500 7 GLU A 51 -59.57 65.70 REMARK 500 7 ARG A 87 85.47 66.44 REMARK 500 7 ASN A 93 -62.42 -120.08 REMARK 500 7 LYS A 109 -0.28 67.08 REMARK 500 8 TYR A 25 -54.00 74.35 REMARK 500 8 GLU A 51 -87.12 64.35 REMARK 500 8 ASP A 86 -79.09 -51.67 REMARK 500 8 ARG A 87 -37.51 171.89 REMARK 500 8 ASN A 93 -70.79 -104.32 REMARK 500 8 LYS A 110 128.60 68.60 REMARK 500 9 VAL A 15 -65.04 -93.79 REMARK 500 9 HIS A 24 -104.38 -136.72 REMARK 500 9 THR A 50 109.02 72.64 REMARK 500 9 GLU A 51 -170.21 68.59 REMARK 500 9 GLN A 53 -53.15 73.15 REMARK 500 9 ARG A 87 89.30 65.92 REMARK 500 9 PHE A 95 38.77 -79.58 REMARK 500 9 GLN A 108 102.22 67.62 REMARK 500 10 VAL A 15 -69.76 -131.93 REMARK 500 10 TYR A 25 -35.12 75.31 REMARK 500 10 THR A 50 -38.33 72.56 REMARK 500 10 SER A 52 -26.77 -168.25 REMARK 500 10 GLN A 53 -42.40 76.22 REMARK 500 10 SER A 54 31.64 -85.35 REMARK 500 10 ASP A 58 -168.04 -127.50 REMARK 500 10 ARG A 87 70.36 65.28 REMARK 500 11 THR A 50 146.23 70.45 REMARK 500 11 GLU A 51 -91.68 76.48 REMARK 500 11 GLN A 53 -17.38 70.72 REMARK 500 11 ASP A 58 -166.32 -129.55 REMARK 500 11 ARG A 79 109.92 -58.25 REMARK 500 11 ASP A 86 -82.61 -63.63 REMARK 500 11 ARG A 87 31.77 -172.96 REMARK 500 11 ASN A 93 -56.60 -136.93 REMARK 500 12 VAL A 15 -62.11 -95.70 REMARK 500 12 TYR A 25 -79.39 69.37 REMARK 500 12 LEU A 27 -175.93 -175.68 REMARK 500 12 THR A 50 145.91 75.39 REMARK 500 12 GLU A 51 -85.40 70.96 REMARK 500 12 SER A 54 85.72 -151.56 REMARK 500 12 ASP A 86 -71.26 -80.91 REMARK 500 12 ARG A 87 141.60 176.43 REMARK 500 12 MET A 88 91.84 -66.92 REMARK 500 12 ARG A 89 -46.03 -146.17 REMARK 500 12 PHE A 95 51.69 -97.66 REMARK 500 12 LYS A 109 -71.33 -55.06 REMARK 500 13 VAL A 15 -74.30 -104.04 REMARK 500 13 GLU A 51 -81.67 -78.96 REMARK 500 13 SER A 52 16.73 -142.96 REMARK 500 13 GLN A 53 -33.78 70.37 REMARK 500 13 ASP A 86 -89.87 -65.50 REMARK 500 13 ARG A 87 27.12 -163.12 REMARK 500 13 ARG A 89 36.58 -91.18 REMARK 500 13 ASN A 93 -52.56 72.01 REMARK 500 13 GLN A 108 -78.98 62.04 REMARK 500 14 VAL A 15 -76.80 -113.17 REMARK 500 14 TYR A 25 -8.61 69.78 REMARK 500 14 LEU A 27 -168.31 -160.12 REMARK 500 14 LEU A 28 108.58 -58.47 REMARK 500 14 GLU A 51 -145.45 -128.61 REMARK 500 14 GLN A 53 -51.35 74.09 REMARK 500 14 ASP A 86 -88.04 -66.04 REMARK 500 14 ARG A 87 99.75 175.86 REMARK 500 14 ASN A 93 -141.81 -137.19 REMARK 500 15 HIS A 24 -64.89 -142.27 REMARK 500 15 TYR A 25 71.61 -100.29 REMARK 500 15 LEU A 27 -161.69 -164.99 REMARK 500 15 LEU A 28 107.41 -59.71 REMARK 500 15 GLU A 51 -150.84 -88.40 REMARK 500 15 GLN A 53 -48.27 71.51 REMARK 500 15 ASN A 93 -60.30 176.94 REMARK 500 15 LYS A 109 -65.47 -96.07 REMARK 500 16 CYS A 16 -85.57 -139.16 REMARK 500 16 GLU A 51 -138.33 -86.33 REMARK 500 16 SER A 52 0.05 -66.59 REMARK 500 16 SER A 54 78.59 -108.52 REMARK 500 16 ASP A 86 -78.57 -57.27 REMARK 500 16 ARG A 87 -31.81 169.49 REMARK 500 16 ASN A 93 -52.36 -157.89 REMARK 500 16 LYS A 109 -77.48 -125.06 REMARK 500 16 LYS A 110 -51.04 -171.86 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 13 SG REMARK 620 2 CYS A 16 SG 116.2 REMARK 620 3 CYS A 30 SG 102.9 109.8 REMARK 620 4 CYS A 33 SG 115.5 99.0 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 49 SG REMARK 620 2 CYS A 55 SG 110.9 REMARK 620 3 CYS A 65 SG 111.5 111.9 REMARK 620 4 CYS A 68 SG 106.9 101.5 113.7 REMARK 620 N 1 2 3
REMARK 650 REMARK 650 HELIX REMARK 650 AUTHOR DETERMINED HELIX RECORDS BASED ON PROCHECK REMARK 650 OUTPUT OF ENTIRE NMR ENSEMBLE
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002
DBREF 2FF0 A 10 111 UNP P33242 STF1_MOUSE 10 111 DBREF 2FF0 B 1 15 PDB 2FF0 2FF0 1 15 DBREF 2FF0 C 16 30 PDB 2FF0 2FF0 16 30
SEQRES 1 A 102 ASP GLU LEU CYS PRO VAL CYS GLY ASP LYS VAL SER GLY SEQRES 2 A 102 TYR HIS TYR GLY LEU LEU THR CYS GLU SER CYS LYS GLY SEQRES 3 A 102 PHE PHE LYS ARG THR VAL GLN ASN ASN LYS HIS TYR THR SEQRES 4 A 102 CYS THR GLU SER GLN SER CYS LYS ILE ASP LYS THR GLN SEQRES 5 A 102 ARG LYS ARG CYS PRO PHE CYS ARG PHE GLN LYS CYS LEU SEQRES 6 A 102 THR VAL GLY MET ARG LEU GLU ALA VAL ARG ALA ASP ARG SEQRES 7 A 102 MET ARG GLY GLY ARG ASN LYS PHE GLY PRO MET TYR LYS SEQRES 8 A 102 ARG ASP ARG ALA LEU LYS GLN GLN LYS LYS ALA SEQRES 1 B 15 DG DG DC DT DC DA DG DG DG DC DC DA DC SEQRES 2 B 15 DA DG SEQRES 1 C 15 DC DT DG DT DG DG DC DC DC DT DG DA DG SEQRES 2 C 15 DC DC
HET ZN A1001 1 HET ZN A1002 1
HETNAM ZN ZINC ION
FORMUL 4 ZN 2(ZN 2+)
HELIX 1 1 GLU A 31 GLN A 42 1 12 HELIX 2 2 PRO A 66 VAL A 76 1 11 HELIX 3 3 LEU A 80 ALA A 82 5 3 HELIX 4 4 GLY A 96 GLN A 107 1 12
SHEET 1 A 2 GLY A 22 HIS A 24 0 SHEET 2 A 2 LEU A 27 THR A 29 -1 O LEU A 27 N HIS A 24
LINK ZN ZN A1001 SG CYS A 13 1555 1555 2.18 LINK ZN ZN A1001 SG CYS A 16 1555 1555 2.19 LINK ZN ZN A1001 SG CYS A 30 1555 1555 2.19 LINK ZN ZN A1001 SG CYS A 33 1555 1555 2.18 LINK ZN ZN A1002 SG CYS A 49 1555 1555 2.23 LINK ZN ZN A1002 SG CYS A 55 1555 1555 2.23 LINK ZN ZN A1002 SG CYS A 65 1555 1555 2.22 LINK ZN ZN A1002 SG CYS A 68 1555 1555 2.24
SITE 1 AC1 4 CYS A 13 CYS A 16 CYS A 30 CYS A 33 SITE 1 AC2 5 CYS A 49 SER A 52 CYS A 55 CYS A 65 SITE 2 AC2 5 CYS A 68
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000