10 20 30 40 50 60 70 80 2FDA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 13-DEC-05 2FDA
TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN TITLE 2 COAGULATION FACTOR XIA IN COMPLEX WITH ALPHA-KETOTHIAZOLE TITLE 3 ARGININE DERIVED LIGAND
COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR XI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGHT CHAIN, CATALYTIC DOMAIN, RESIDUES 388-625; COMPND 5 EC: 3.4.21.27; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F11; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X-33
KEYWDS FXIA, INHIBITOR, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR L.JIN,P.PANDEY,R.E.BABINE,D.T.WEAVER,S.S.ABDEL-MEGUID, AUTHOR 2 J.E.STRICKLER
REVDAT 3 24-FEB-09 2FDA 1 VERSN REVDAT 2 09-MAY-06 2FDA 1 JRNL REVDAT 1 18-APR-06 2FDA 0
JRNL AUTH H.DENG,T.D.BANNISTER,L.JIN,R.E.BABINE,J.QUINN, JRNL AUTH 2 P.NAGAFUJI,C.A.CELATKA,J.LIN,T.I.LAZAROVA, JRNL AUTH 3 M.J.RYNKIEWICZ,F.BIBBINS,P.PANDEY,J.GORGA, JRNL AUTH 4 H.V.MEYERS,S.S.ABDEL-MEGUID,J.E.STRICKLER JRNL TITL SYNTHESIS, SAR EXPLORATION, AND X-RAY CRYSTAL JRNL TITL 2 STRUCTURES OF FACTOR XIA INHIBITORS CONTAINING AN JRNL TITL 3 ALPHA-KETOTHIAZOLE ARGININE JRNL REF BIOORG.MED.CHEM.LETT. V. 16 3049 2006 JRNL REFN ISSN 0960-894X JRNL PMID 16524727 JRNL DOI 10.1016/J.BMCL.2006.02.052
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.JIN,P.PANDEY,R.E.BABINE,D.T.WEAVER, REMARK 1 AUTH 2 S.S.ABDEL-MEGUID,J.E.STRICKLER REMARK 1 TITL MUTATION OF SURFACE RESIDUES TO PROMOTE REMARK 1 TITL 2 CRYSTALLIZATION OF ACTIVATED FACTOR XI AS A REMARK 1 TITL 3 COMPLEX WITH BENZAMIDINE: AN ESSENTIAL STEP FOR REMARK 1 TITL 4 THE ITERATIVE STRUCTURE-BASED DESIGN OF FACTOR XI REMARK 1 TITL 5 INHIBITORS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 61 1418 2005 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 16204896 REMARK 1 DOI 10.1107/S0907444905024340
REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2005 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 369696.480 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 19908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1951 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 20224 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1727 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 203 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1891 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.80 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.68 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.190 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.840 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.910 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.900 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 51.38 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PAR REMARK 3 PARAMETER FILE 2 : WATER_REP.PAR REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : LIG.PAR REMARK 3 PARAMETER FILE 5 : COVL.PAR REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : LIG.TOP REMARK 3 TOPOLOGY FILE 5 : COVL.TOP REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2FDA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-06. REMARK 100 THE RCSB ID CODE IS RCSB035739.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : BLUE OSMIC MIRRORS REMARK 200 OPTICS : BLUE OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20224 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNX 2005 REMARK 200 STARTING MODEL: PDB ENTRY 1ZHR REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 0.1 M TRIS- REMARK 280 HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 283K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 60.65900 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.65900 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 60.65900 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 60.65900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 60.65900 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 60.65900 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 60.65900 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 60.65900 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 60.65900 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 60.65900 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 60.65900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 60.65900 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 60.65900 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 60.65900 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 60.65900 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 60.65900 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 60.65900 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 60.65900 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 60.65900 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 60.65900 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 60.65900 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 60.65900 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 60.65900 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 60.65900 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 60.65900 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 60.65900 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 60.65900 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 60.65900 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 60.65900 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 60.65900 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 60.65900 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 60.65900 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 60.65900 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 60.65900 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 60.65900 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 60.65900 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 245
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 37B NH2 ARG A 37D 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 201 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 37C 137.40 -36.51 REMARK 500 LEU A 39 -60.43 -104.39 REMARK 500 ARG A 147 63.88 -106.65 REMARK 500 ASP A 148 -150.71 -120.06 REMARK 500 SER A 214 -70.77 -124.07 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 492 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH A 504 DISTANCE = 5.76 ANGSTROMS REMARK 525 HOH A 510 DISTANCE = 5.28 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCT A 302 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCT A 304 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 682 A 1
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZHR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF COAGULATION REMARK 900 FACTOR XI IN COMPLEX WITH BENZAMIDINE (S434A-T475A-C482S- REMARK 900 K437A MUTANT) REMARK 900 RELATED ID: 1ZPB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF COAGULATION REMARK 900 FACTOR XI IN COMPLEX WITH 4-METHYL-PENTANOIC ACID {1-[4- REMARK 900 GUANIDINO-1-(THIAZOLE-2-CARBONYL)-BUTYLCARBAMOYL]-2-METHYL- REMARK 900 PROPYL}-AMIDE REMARK 900 RELATED ID: 1ZPC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF COAGULATION REMARK 900 FACTOR XI IN COMPLEX WITH 2-[2-(3-CHLORO-PHENYL)-2-HYDROXY- REMARK 900 ACETYLAMINO]-N-[4-GUANIDINO-1-(THIAZOLE-2-CARBONYL)-BUTYL]- REMARK 900 3-METHYL-BUTYRAMIDE
DBREF 2FDA A 16 245 UNP P03951 FA11_HUMAN 388 625
SEQADV 2FDA ALA A 75 UNP P03951 SER 452 ENGINEERED SEQADV 2FDA ALA A 78 UNP P03951 LYS 455 ENGINEERED SEQADV 2FDA ALA A 115 UNP P03951 THR 493 ENGINEERED SEQADV 2FDA SER A 123 UNP P03951 CYS 500 ENGINEERED
SEQRES 1 A 238 ILE VAL GLY GLY THR ALA SER VAL ARG GLY GLU TRP PRO SEQRES 2 A 238 TRP GLN VAL THR LEU HIS THR THR SER PRO THR GLN ARG SEQRES 3 A 238 HIS LEU CYS GLY GLY SER ILE ILE GLY ASN GLN TRP ILE SEQRES 4 A 238 LEU THR ALA ALA HIS CYS PHE TYR GLY VAL GLU SER PRO SEQRES 5 A 238 LYS ILE LEU ARG VAL TYR SER GLY ILE LEU ASN GLN ALA SEQRES 6 A 238 GLU ILE ALA GLU ASP THR SER PHE PHE GLY VAL GLN GLU SEQRES 7 A 238 ILE ILE ILE HIS ASP GLN TYR LYS MET ALA GLU SER GLY SEQRES 8 A 238 TYR ASP ILE ALA LEU LEU LYS LEU GLU THR THR VAL ASN SEQRES 9 A 238 TYR ALA ASP SER GLN ARG PRO ILE SER LEU PRO SER LYS SEQRES 10 A 238 GLY ASP ARG ASN VAL ILE TYR THR ASP CYS TRP VAL THR SEQRES 11 A 238 GLY TRP GLY TYR ARG LYS LEU ARG ASP LYS ILE GLN ASN SEQRES 12 A 238 THR LEU GLN LYS ALA LYS ILE PRO LEU VAL THR ASN GLU SEQRES 13 A 238 GLU CYS GLN LYS ARG TYR ARG GLY HIS LYS ILE THR HIS SEQRES 14 A 238 LYS MET ILE CYS ALA GLY TYR ARG GLU GLY GLY LYS ASP SEQRES 15 A 238 ALA CYS LYS GLY ASP SER GLY GLY PRO LEU SER CYS LYS SEQRES 16 A 238 HIS ASN GLU VAL TRP HIS LEU VAL GLY ILE THR SER TRP SEQRES 17 A 238 GLY GLU GLY CYS ALA GLN ARG GLU ARG PRO GLY VAL TYR SEQRES 18 A 238 THR ASN VAL VAL GLU TYR VAL ASP TRP ILE LEU GLU LYS SEQRES 19 A 238 THR GLN ALA VAL
HET BCT A 302 4 HET SO4 A 303 5 HET BCT A 304 4 HET 682 A 1 26
HETNAM BCT BICARBONATE ION HETNAM SO4 SULFATE ION HETNAM 682 N~2~-(AMINOCARBONYL)-N~1~-{4-{[AMINO(IMINO) HETNAM 2 682 METHYL]AMINO}-1-[HYDROXY(1,3-THIAZOL-2-YL) HETNAM 3 682 METHYL]BUTYL}VALINAMIDE
FORMUL 2 BCT 2(C H O3 1-) FORMUL 3 SO4 O4 S 2- FORMUL 5 682 C15 H27 N7 O3 S FORMUL 6 HOH *255(H2 O)
HELIX 1 1 ALA A 55 TYR A 59A 5 6 HELIX 2 2 SER A 61 LYS A 63 5 3 HELIX 3 3 ASN A 73 ILE A 77 5 5 HELIX 4 4 MET A 96 GLY A 100 5 5 HELIX 5 5 SER A 126 VAL A 132 5 7 HELIX 6 6 THR A 164 TYR A 172 1 9 HELIX 7 7 TYR A 234 GLN A 243 1 10
SHEET 1 A 8 THR A 20 ALA A 21 0 SHEET 2 A 8 GLN A 156 LYS A 159 -1 O LYS A 157 N THR A 20 SHEET 3 A 8 CYS A 136 GLY A 140 -1 N VAL A 138 O ALA A 158 SHEET 4 A 8 PRO A 198 LYS A 202 -1 O SER A 198B N TRP A 137 SHEET 5 A 8 TRP A 203 TRP A 215 -1 O GLY A 211 N LEU A 198A SHEET 6 A 8 GLY A 226 ASN A 230 -1 O VAL A 227 N TRP A 215 SHEET 7 A 8 MET A 180 ALA A 183 -1 N ILE A 181 O TYR A 228 SHEET 8 A 8 LEU A 162 VAL A 163 -1 N VAL A 163 O CYS A 182 SHEET 1 B 7 GLN A 30 THR A 35 0 SHEET 2 B 7 ARG A 37D GLY A 46 -1 O LEU A 39 N LEU A 33 SHEET 3 B 7 TRP A 51 THR A 54 -1 O LEU A 53 N SER A 43 SHEET 4 B 7 ALA A 104 LEU A 108 -1 O ALA A 104 N THR A 54 SHEET 5 B 7 PHE A 83 ILE A 90 -1 N ILE A 89 O LEU A 105 SHEET 6 B 7 LEU A 65 SER A 69 -1 N VAL A 67 O PHE A 83 SHEET 7 B 7 GLN A 30 THR A 35 -1 N HIS A 34 O ARG A 66
SSBOND 1 CYS A 40 CYS A 58 1555 1555 2.01 SSBOND 2 CYS A 136 CYS A 201 1555 1555 2.04 SSBOND 3 CYS A 168 CYS A 182 1555 1555 2.03 SSBOND 4 CYS A 191 CYS A 219 1555 1555 2.03
LINK OG SER A 195 CX 682 A 1 1555 1555 1.44
CISPEP 1 SER A 37 PRO A 37A 0 -3.55
SITE 1 AC1 4 THR A 20 ALA A 21 GLN A 48 GLN A 86 SITE 1 AC2 5 ASN A 113 TYR A 143 LYS A 149 LYS A 192 SITE 2 AC2 5 HOH A 469 SITE 1 AC3 4 ILE A 45 LYS A 175 THR A 242 HOH A 364 SITE 1 AC4 17 HIS A 57 ASP A 189 ALA A 190 CYS A 191 SITE 2 AC4 17 LYS A 192 GLY A 193 ASP A 194 SER A 195 SITE 3 AC4 17 SER A 214 TRP A 215 GLY A 216 GLY A 218 SITE 4 AC4 17 GLY A 226 HOH A 320 HOH A 451 HOH A 454 SITE 5 AC4 17 HOH A 484
CRYST1 121.318 121.318 121.318 90.00 90.00 90.00 I 2 3 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008243 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008243 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008243 0.00000