10 20 30 40 50 60 70 80 2FCW - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIPID TRANSPORT/ENDOCYTOSIS/CHAPERONE 12-DEC-05 2FCW
TITLE STRUCTURE OF A COMPLEX BETWEEN THE PAIR OF THE LDL RECEPTOR TITLE 2 LIGAND-BINDING MODULES 3-4 AND THE RECEPTOR ASSOCIATED TITLE 3 PROTEIN (RAP).
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-2-MACROGLOBULIN RECEPTOR-ASSOCIATED COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: DOMAIN THREE; COMPND 6 SYNONYM: ALPHA-2- MRAP, LOW DENSITY LIPOPROTEIN RECEPTOR- COMPND 7 RELATED PROTEIN-ASSOCIATED PROTEIN 1, RAP; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: LOW-DENSITY LIPOPROTEIN RECEPTOR; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: A PAIR OF LIGAND-BINDING MODULES 3 AND 4; COMPND 14 SYNONYM: LDL RECEPTOR; COMPND 15 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST15; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: LDLR; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PMM
KEYWDS PROTEIN-PROTEIN COMPLEX, RAP, LDLR, ESCORT PROTEIN, CALCIUM- KEYWDS 2 BINDING, LIPID TRANSPORT/ENDOCYTOSIS/CHAPERONE COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR N.BEGLOVA,C.FISHER,S.C.BLACKLOW
REVDAT 2 24-FEB-09 2FCW 1 VERSN REVDAT 1 16-MAY-06 2FCW 0
JRNL AUTH C.FISHER,N.BEGLOVA,S.C.BLACKLOW JRNL TITL STRUCTURE OF AN LDLR-RAP COMPLEX REVEALS A GENERAL JRNL TITL 2 MODE FOR LIGAND RECOGNITION BY LIPOPROTEIN JRNL TITL 3 RECEPTORS JRNL REF MOL.CELL V. 22 277 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16630895 JRNL DOI 10.1016/J.MOLCEL.2006.02.021
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.26 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.9 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.152 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.152 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2323 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 44243 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.135 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.135 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 1826 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 34481 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1480 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 219 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1690.50 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 1315.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 6 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 15302 REMARK 3 NUMBER OF RESTRAINTS : 18660 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 ANGLE DISTANCES (A) : 0.027 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.022 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.059 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.066 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.015 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.004 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.058 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.087 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2FCW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB035727.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46566 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.260 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.0 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.32400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: BUILT BY ARP/WARP REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% MPD, 100 MM HEPES, 75 MM NACL, REMARK 280 1.25 MM CACL2, PH 7.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.26150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.00950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.26150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.00950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -132.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 55 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 321 REMARK 465 GLU A 322 REMARK 465 LEU A 323 REMARK 465 ARG B 164 REMARK 465 GLY B 165
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 222 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 272 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 272 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 282 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 287 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 287 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 314 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 217 -121.24 -121.45 REMARK 500 ASN A 234 55.17 -118.72 REMARK 500 SER B 137 -11.87 94.75 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 121 DISTANCE = 5.23 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B3001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 105 O REMARK 620 2 ASP B 108 OD1 84.4 REMARK 620 3 ASP B 110 O 168.5 84.7 REMARK 620 4 ASP B 112 OD2 93.8 97.9 84.1 REMARK 620 5 GLU B 119 OE2 94.9 81.5 87.0 171.1 REMARK 620 6 ASP B 118 OD2 103.5 170.0 87.7 87.7 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B3002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP B 144 O REMARK 620 2 ASP B 157 OD2 97.5 REMARK 620 3 ASP B 149 O 172.4 87.5 REMARK 620 4 GLU B 158 OE2 103.4 91.5 82.2 REMARK 620 5 ASP B 147 OD1 84.9 173.2 90.9 81.7 REMARK 620 6 ASP B 151 OD2 90.4 90.1 83.8 165.8 96.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A5001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 265 OE2 REMARK 620 2 HOH A 61 O 89.7 REMARK 620 3 HOH A 73 O 163.1 93.8 REMARK 620 4 GLU A 269 OE2 87.5 174.1 90.3 REMARK 620 5 HOH B5023 O 84.3 93.5 78.9 91.3 REMARK 620 6 GLU A 265 OE2 65.0 74.8 131.8 99.3 146.8 REMARK 620 7 GLU A 265 OE1 115.5 92.1 81.0 84.5 159.4 53.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A5003 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 110 O REMARK 620 2 ASP A 228 OD2 135.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B5002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 86 O REMARK 620 2 HOH B5004 O 82.4 REMARK 620 3 HOH B5012 O 114.6 81.6 REMARK 620 4 GLY B 98 O 159.1 94.4 85.2 REMARK 620 5 HOH B5003 O 86.7 166.3 95.5 98.7 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 3001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 3002 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 5001 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 5002 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 5003 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 5004 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 4001 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 4002 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 4003 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 4004 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 4005
DBREF 2FCW A 215 323 UNP P30533 AMRP_HUMAN 249 357 DBREF 2FCW B 86 165 UNP P01130 LDLR_HUMAN 107 186
SEQADV 2FCW GLY A 215 UNP P30533 GLU 249 ENGINEERED
SEQRES 1 A 109 GLY ALA GLU PHE GLU GLU PRO ARG VAL ILE ASP LEU TRP SEQRES 2 A 109 ASP LEU ALA GLN SER ALA ASN LEU THR ASP LYS GLU LEU SEQRES 3 A 109 GLU ALA PHE ARG GLU GLU LEU LYS HIS PHE GLU ALA LYS SEQRES 4 A 109 ILE GLU LYS HIS ASN HIS TYR GLN LYS GLN LEU GLU ILE SEQRES 5 A 109 ALA HIS GLU LYS LEU ARG HIS ALA GLU SER VAL GLY ASP SEQRES 6 A 109 GLY GLU ARG VAL SER ARG SER ARG GLU LYS HIS ALA LEU SEQRES 7 A 109 LEU GLU GLY ARG THR LYS GLU LEU GLY TYR THR VAL LYS SEQRES 8 A 109 LYS HIS LEU GLN ASP LEU SER GLY ARG ILE SER ARG ALA SEQRES 9 A 109 ARG HIS ASN GLU LEU SEQRES 1 B 80 LYS THR CYS SER GLN ALA GLU PHE ARG CYS HIS ASP GLY SEQRES 2 B 80 LYS CYS ILE SER ARG GLN PHE VAL CYS ASP SER ASP ARG SEQRES 3 B 80 ASP CYS LEU ASP GLY SER ASP GLU ALA SER CYS PRO VAL SEQRES 4 B 80 LEU THR CYS GLY PRO ALA SER PHE GLN CYS ASN SER SER SEQRES 5 B 80 THR CYS ILE PRO GLN LEU TRP ALA CYS ASP ASN ASP PRO SEQRES 6 B 80 ASP CYS GLU ASP GLY SER ASP GLU TRP PRO GLN ARG CYS SEQRES 7 B 80 ARG GLY
HET CA B3001 1 HET CA B3002 1 HET NA A5001 1 HET NA B5002 1 HET NA A5003 1 HET NA A5004 1 HET MPD A4001 8 HET MPD A4002 8 HET MPD B4003 8 HET MPD B4004 8 HET MPD B4005 8
HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL
FORMUL 3 CA 2(CA 2+) FORMUL 5 NA 4(NA 1+) FORMUL 9 MPD 5(C6 H14 O2) FORMUL 14 HOH *179(H2 O)
HELIX 1 1 GLU A 220 SER A 232 1 13 HELIX 2 2 THR A 236 GLY A 278 1 43 HELIX 3 3 ARG A 282 HIS A 320 1 39 HELIX 4 4 GLN B 104 VAL B 106 5 3 HELIX 5 5 SER B 121 CYS B 127 1 7 HELIX 6 6 LEU B 143 ALA B 145 5 3 HELIX 7 7 GLY B 155 CYS B 163 5 9
SHEET 1 A 2 GLU B 92 ARG B 94 0 SHEET 2 A 2 CYS B 100 SER B 102 -1 O ILE B 101 N PHE B 93 SHEET 1 B 2 SER B 131 GLN B 133 0 SHEET 2 B 2 CYS B 139 PRO B 141 -1 O ILE B 140 N PHE B 132
SSBOND 1 CYS B 88 CYS B 100 1555 1555 2.03 SSBOND 2 CYS B 95 CYS B 113 1555 1555 2.05 SSBOND 3 CYS B 107 CYS B 122 1555 1555 2.03 SSBOND 4 CYS B 127 CYS B 139 1555 1555 2.03 SSBOND 5 CYS B 134 CYS B 152 1555 1555 2.06 SSBOND 6 CYS B 146 CYS B 163 1555 1555 2.07
LINK CA CA B3001 O PHE B 105 1555 1555 2.26 LINK CA CA B3001 OD1 ASP B 108 1555 1555 2.26 LINK CA CA B3001 O ASP B 110 1555 1555 2.25 LINK CA CA B3001 OD2 ASP B 112 1555 1555 2.27 LINK CA CA B3002 O TRP B 144 1555 1555 2.27 LINK NA NA A5001 OE2 GLU A 265 1555 1555 2.42 LINK NA NA A5001 O HOH A 61 1555 1555 2.27 LINK NA NA A5001 O HOH A 73 1555 1555 2.36 LINK NA NA A5001 OE2 GLU A 269 1555 1555 2.28 LINK NA NA A5001 O HOH B5023 1555 1555 2.41 LINK NA NA A5003 O HOH A 110 1555 1555 2.54 LINK CA CA B3001 OE2 GLU B 119 1555 1555 2.30 LINK CA CA B3001 OD2 ASP B 118 1555 1555 2.30 LINK CA CA B3002 OD2 ASP B 157 1555 1555 2.31 LINK CA CA B3002 O ASP B 149 1555 1555 2.32 LINK CA CA B3002 OE2 GLU B 158 1555 1555 2.33 LINK CA CA B3002 OD1 ASP B 147 1555 1555 2.31 LINK CA CA B3002 OD2 ASP B 151 1555 1555 2.32 LINK NA NA B5002 O LYS B 86 1555 1555 2.31 LINK NA NA B5002 O HOH B5004 1555 1555 2.47 LINK NA NA B5002 O HOH B5012 1555 1555 2.50 LINK NA NA B5002 O GLY B 98 1555 1555 2.24 LINK NA NA B5002 O HOH B5003 1555 1555 2.28 LINK NA NA A5001 OE2 GLU A 265 1555 2556 2.37 LINK NA NA A5001 OE1 GLU A 265 1555 2556 2.44 LINK OD2 ASP A 228 NA NA A5003 1555 1555 2.64 LINK NA NA A5004 O HOH A 121 1555 1555 2.99
SITE 1 AC1 6 PHE B 105 ASP B 108 ASP B 110 ASP B 112 SITE 2 AC1 6 ASP B 118 GLU B 119 SITE 1 AC2 6 TRP B 144 ASP B 147 ASP B 149 ASP B 151 SITE 2 AC2 6 ASP B 157 GLU B 158 SITE 1 AC3 5 HOH A 61 HOH A 73 GLU A 265 GLU A 269 SITE 2 AC3 5 HOH B5023 SITE 1 AC4 5 LYS B 86 GLY B 98 HOH B5003 HOH B5004 SITE 2 AC4 5 HOH B5012 SITE 1 AC5 4 HOH A 68 HOH A 110 ASP A 228 SER A 232 SITE 1 AC6 5 HOH A 56 HOH A 91 HOH A 121 LEU A 240 SITE 2 AC6 5 HOH B5014 SITE 1 AC7 3 HIS A 259 ASP B 151 GLU B 153 SITE 1 AC8 6 HOH A 145 GLU A 217 PHE A 218 ARG A 244 SITE 2 AC8 6 LYS A 248 LYS A 298 SITE 1 AC9 1 GLN B 133 SITE 1 BC1 4 PRO B 129 ASN B 135 SER B 137 GLN B 142 SITE 1 BC2 7 ARG A 222 GLY A 313 SER A 316 THR B 87 SITE 2 BC2 7 CYS B 88 SER B 89 GLN B 90
CRYST1 118.523 30.019 58.143 90.00 96.57 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008437 0.000000 0.000972 0.00000
SCALE2 0.000000 0.033312 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017313 0.00000