10 20 30 40 50 60 70 80 2FC8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 12-DEC-05 2FC8
TITLE SOLUTION STRUCTURE OF THE RRM_1 DOMAIN OF NCL PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NCL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM_1 DOMAIN, RESIDUES 8-96; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050516-05
KEYWDS NMR, STRUCTURE GENOMICS, RRM_1 DOMAIN, NCL PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-JUN-08 2FC8 1 SOURCE REMARK DBREF SEQADV REVDAT 2 2 1 VERSN REVDAT 1 12-JUN-06 2FC8 0
JRNL AUTH W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RRM_1 DOMAIN OF NCL JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2FC8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB035706.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 90 %H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 103.67 -41.51 REMARK 500 1 ASN A 9 33.65 72.68 REMARK 500 1 THR A 27 115.32 -38.83 REMARK 500 1 SER A 35 -37.06 -35.78 REMARK 500 1 ASP A 37 97.92 -69.20 REMARK 500 1 SER A 39 165.58 -49.44 REMARK 500 1 ALA A 89 91.01 -57.71 REMARK 500 1 PRO A 91 -171.41 -69.73 REMARK 500 1 LYS A 92 -55.65 -134.86 REMARK 500 2 PRO A 14 -172.98 -69.75 REMARK 500 2 THR A 27 114.95 -34.86 REMARK 500 2 SER A 35 -30.98 -38.51 REMARK 500 2 ASP A 37 83.39 -69.37 REMARK 500 2 SER A 39 161.04 -47.57 REMARK 500 2 SER A 53 103.90 -58.56 REMARK 500 2 ALA A 89 144.48 -34.30 REMARK 500 3 PRO A 14 -168.74 -69.77 REMARK 500 3 THR A 27 110.76 -39.92 REMARK 500 3 SER A 35 -31.92 -35.27 REMARK 500 3 SER A 39 164.32 -42.95 REMARK 500 3 SER A 53 108.01 -53.56 REMARK 500 3 TRP A 88 102.39 -57.56 REMARK 500 3 ALA A 89 105.34 -33.92 REMARK 500 3 PRO A 99 97.26 -69.74 REMARK 500 4 SER A 6 77.15 -100.23 REMARK 500 4 PRO A 14 -165.99 -69.76 REMARK 500 4 THR A 27 120.17 -35.60 REMARK 500 4 SER A 35 -34.80 -38.47 REMARK 500 4 ASP A 37 90.56 -65.42 REMARK 500 4 SER A 39 162.57 -46.29 REMARK 500 4 ALA A 89 97.87 -55.21 REMARK 500 4 LYS A 92 104.81 -44.44 REMARK 500 4 GLU A 94 40.04 -108.78 REMARK 500 4 SER A 100 157.26 -45.89 REMARK 500 5 PRO A 8 2.89 -69.82 REMARK 500 5 ARG A 11 50.70 35.07 REMARK 500 5 THR A 27 116.24 -38.88 REMARK 500 5 SER A 35 -36.05 -37.60 REMARK 500 5 ASP A 37 99.28 -67.23 REMARK 500 5 SER A 39 167.04 -44.04 REMARK 500 5 ALA A 89 162.48 -41.15 REMARK 500 5 PRO A 91 99.40 -69.76 REMARK 500 5 PRO A 99 -179.22 -69.77 REMARK 500 6 ALA A 10 39.22 -89.86 REMARK 500 6 SER A 12 165.82 -43.63 REMARK 500 6 GLN A 13 142.30 -37.28 REMARK 500 6 PRO A 14 -166.07 -69.82 REMARK 500 6 SER A 39 159.43 -41.70 REMARK 500 6 SER A 53 107.49 -56.24 REMARK 500 7 ASN A 9 38.55 -83.84 REMARK 500 7 PRO A 14 -173.38 -69.72 REMARK 500 7 THR A 27 117.08 -38.35 REMARK 500 7 SER A 35 -36.84 -35.04 REMARK 500 7 SER A 39 159.37 -43.45 REMARK 500 7 GLU A 94 41.42 -106.26 REMARK 500 7 SER A 97 175.61 -58.29 REMARK 500 8 THR A 27 121.21 -34.42 REMARK 500 8 SER A 35 -29.70 -38.28 REMARK 500 8 SER A 39 164.47 -47.56 REMARK 500 8 PRO A 99 0.26 -69.74 REMARK 500 9 PRO A 8 87.98 -69.74 REMARK 500 9 ASN A 9 147.33 -38.35 REMARK 500 9 THR A 27 112.62 -39.31 REMARK 500 9 SER A 35 -36.63 -38.15 REMARK 500 9 ASP A 37 98.52 -67.40 REMARK 500 9 SER A 39 160.68 -44.38 REMARK 500 9 ALA A 89 118.89 -37.64 REMARK 500 9 PRO A 99 -178.06 -69.71 REMARK 500 10 ARG A 11 -27.89 -39.35 REMARK 500 10 PRO A 14 -175.26 -69.79 REMARK 500 10 THR A 27 120.43 -34.24 REMARK 500 10 SER A 35 -31.80 -36.41 REMARK 500 10 SER A 39 165.30 -43.73 REMARK 500 10 PRO A 99 99.56 -69.85 REMARK 500 11 ASN A 9 46.16 -103.24 REMARK 500 11 GLN A 13 153.93 -40.18 REMARK 500 11 PRO A 14 -174.33 -69.75 REMARK 500 11 THR A 27 120.77 -39.11 REMARK 500 11 SER A 35 -39.35 -34.69 REMARK 500 11 SER A 39 166.22 -44.78 REMARK 500 11 SER A 53 106.56 -47.38 REMARK 500 12 ARG A 11 34.87 35.44 REMARK 500 12 PRO A 14 -168.02 -69.74 REMARK 500 12 THR A 27 121.69 -36.52 REMARK 500 12 SER A 35 -26.10 -39.40 REMARK 500 12 ASP A 37 94.36 -68.15 REMARK 500 12 SER A 39 158.79 -39.42 REMARK 500 12 SER A 97 42.73 71.77 REMARK 500 13 ALA A 10 -70.50 -34.47 REMARK 500 13 GLN A 13 141.13 -34.21 REMARK 500 13 PRO A 14 -170.80 -69.84 REMARK 500 13 THR A 27 126.97 -34.54 REMARK 500 13 SER A 35 -28.74 -38.50 REMARK 500 13 SER A 39 172.34 -47.41 REMARK 500 13 LYS A 92 43.00 32.78 REMARK 500 13 GLU A 94 -62.69 -97.43 REMARK 500 13 SER A 97 164.98 -42.36 REMARK 500 14 PRO A 8 80.54 -69.71 REMARK 500 14 PRO A 14 -174.64 -69.76 REMARK 500 14 THR A 27 118.95 -35.65 REMARK 500 14 SER A 35 -37.45 -38.58 REMARK 500 14 ASP A 37 93.15 -68.23 REMARK 500 14 SER A 39 156.51 -42.02 REMARK 500 14 GLU A 94 29.70 44.86 REMARK 500 15 SER A 2 130.90 -39.53 REMARK 500 15 PRO A 8 -172.32 -69.81 REMARK 500 15 ARG A 11 29.42 38.06 REMARK 500 15 GLN A 13 149.84 -36.42 REMARK 500 15 PRO A 14 -169.14 -69.79 REMARK 500 15 THR A 27 123.82 -36.82 REMARK 500 15 SER A 35 -31.87 -38.46 REMARK 500 15 SER A 39 151.87 -43.25 REMARK 500 15 GLU A 94 49.36 -87.01 REMARK 500 16 GLN A 13 146.71 -36.00 REMARK 500 16 PRO A 14 -164.86 -69.73 REMARK 500 16 THR A 27 122.10 -38.61 REMARK 500 16 SER A 35 -32.62 -34.82 REMARK 500 16 ASP A 37 85.53 -67.80 REMARK 500 16 SER A 39 171.94 -45.97 REMARK 500 16 PRO A 91 95.64 -69.85 REMARK 500 16 SER A 100 -50.66 -133.27 REMARK 500 17 SER A 3 96.33 -34.93 REMARK 500 17 PRO A 8 2.62 -69.73 REMARK 500 17 ALA A 10 172.04 -52.29 REMARK 500 17 ARG A 11 -38.77 -38.70 REMARK 500 17 THR A 27 115.79 -38.37 REMARK 500 17 SER A 35 -37.03 -36.12 REMARK 500 17 SER A 39 164.62 -44.54 REMARK 500 17 LYS A 90 133.35 -170.79 REMARK 500 17 LYS A 92 88.46 -66.95 REMARK 500 17 PRO A 99 2.81 -69.79 REMARK 500 18 SER A 5 157.63 -42.09 REMARK 500 18 SER A 12 -52.24 -125.00 REMARK 500 18 PRO A 14 -164.22 -69.83 REMARK 500 18 THR A 27 129.50 -34.89 REMARK 500 18 SER A 39 151.79 -39.63 REMARK 500 18 PRO A 91 96.07 -69.80 REMARK 500 19 SER A 5 111.15 -36.90 REMARK 500 19 PRO A 14 -164.73 -69.79 REMARK 500 19 THR A 27 115.16 -36.17 REMARK 500 19 SER A 35 -36.61 -38.60 REMARK 500 19 ASP A 37 47.86 -77.27 REMARK 500 19 SER A 97 53.69 35.16 REMARK 500 19 PRO A 99 90.06 -69.79 REMARK 500 19 SER A 101 156.96 -48.55 REMARK 500 20 SER A 12 147.30 -38.05 REMARK 500 20 GLN A 13 155.05 -41.36 REMARK 500 20 PRO A 14 -170.01 -69.72 REMARK 500 20 THR A 27 121.00 -34.31 REMARK 500 20 SER A 35 -32.12 -36.40 REMARK 500 20 ASP A 37 98.62 -68.74 REMARK 500 20 ALA A 89 137.47 -36.91 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FC9 RELATED DB: PDB REMARK 900 THE DIFFERENT FRAGMENT OF THE SAME PROTEIN REMARK 900 RELATED ID: HSI002005757.2 RELATED DB: TARGETDB
DBREF 2FC8 A 8 96 UNP Q9BQ02 Q9BQ02_HUMAN 336 424
SEQADV 2FC8 GLY A 1 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 SER A 2 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 SER A 3 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 GLY A 4 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 SER A 5 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 SER A 6 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 GLY A 7 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 SER A 97 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 GLY A 98 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 PRO A 99 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 SER A 100 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 SER A 101 UNP Q9BQ02 EXPRESSION TAG SEQADV 2FC8 GLY A 102 UNP Q9BQ02 EXPRESSION TAG
SEQRES 1 A 102 GLY SER SER GLY SER SER GLY PRO ASN ALA ARG SER GLN SEQRES 2 A 102 PRO SER LYS THR LEU PHE VAL LYS GLY LEU SER GLU ASP SEQRES 3 A 102 THR THR GLU GLU THR LEU LYS GLU SER PHE ASP GLY SER SEQRES 4 A 102 VAL ARG ALA ARG ILE VAL THR ASP ARG GLU THR GLY SER SEQRES 5 A 102 SER LYS GLY PHE GLY PHE VAL ASP PHE ASN SER GLU GLU SEQRES 6 A 102 ASP ALA LYS ALA ALA LYS GLU ALA MET GLU ASP GLY GLU SEQRES 7 A 102 ILE ASP GLY ASN LYS VAL THR LEU ASP TRP ALA LYS PRO SEQRES 8 A 102 LYS GLY GLU GLY GLY SER GLY PRO SER SER GLY
HELIX 1 1 GLU A 29 SER A 35 1 7 HELIX 2 2 GLU A 64 MET A 74 1 11
SHEET 1 A 4 ARG A 41 VAL A 45 0 SHEET 2 A 4 PHE A 56 ASP A 60 -1 O PHE A 58 N ARG A 43 SHEET 3 A 4 LEU A 18 LYS A 21 -1 N VAL A 20 O GLY A 57 SHEET 4 A 4 THR A 85 TRP A 88 -1 O ASP A 87 N PHE A 19 SHEET 1 B 2 GLU A 78 ILE A 79 0 SHEET 2 B 2 ASN A 82 LYS A 83 -1 O ASN A 82 N ILE A 79
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000