10 20 30 40 50 60 70 80 2FB4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER IMMUNOGLOBULIN 18-APR-89 2FB4
TITLE DIR PRIMAERSTRUKTUR DES KRISTALLISIERBAREN MONOKLONALEN TITLE 2 IMMUNOGLOBULINS IGG1 KOL. II. AMINOSAEURESEQUENZ DER L- TITLE 3 KETTE, LAMBDA-TYP, SUBGRUPPE I (GERMAN)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG1-LAMBDA KOL FAB (LIGHT CHAIN); COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG1-LAMBDA KOL FAB (HEAVY CHAIN); COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606
KEYWDS IMMUNOGLOBULIN
EXPDTA X-RAY DIFFRACTION
AUTHOR M.MARQUART,R.HUBER
REVDAT 3 24-FEB-09 2FB4 1 VERSN REVDAT 2 01-APR-03 2FB4 1 JRNL REVDAT 1 12-JUL-89 2FB4 0
SPRSDE 12-JUL-89 2FB4 1FB4
JRNL AUTH H.D.KRATZIN,W.PALM,M.STANGEL,W.E.SCHMIDT, JRNL AUTH 2 J.FRIEDRICH,N.HILSCHMANN JRNL TITL THE PRIMARY STRUCTURE OF CRYSTALLIZABLE MONOCLONAL JRNL TITL 2 IMMUNOGLOBULIN IGG1 KOL. II. AMINO ACID SEQUENCE JRNL TITL 3 OF THE L-CHAIN, GAMMA-TYPE, SUBGROUP I JRNL REF BIOL.CHEM.HOPPE-SEYLER V. 370 263 1989 JRNL REFN ISSN 0177-3593 JRNL PMID 2713105
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.MARQUART,J.DEISENHOFER REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF ANTIBODIES REMARK 1 REF IMMUNOL.TODAY V. 3 160 1982 REMARK 1 REFN ISSN 0167-4919 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.MARQUART,J.DEISENHOFER,R.HUBER,W.PALM REMARK 1 TITL CRYSTALLOGRAPHIC REFINEMENT AND ATOMIC MODELS OF REMARK 1 TITL 2 THE INTACT IMMUNOGLOBULIN MOLECULE KOL AND ITS REMARK 1 TITL 3 ANTIGEN-BINDING FRAGMENT AT 3.0 ANGSTROMS AND 1.9 REMARK 1 TITL 4 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 141 369 1980 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.MATSUSHIMA,M.MARQUART,T.A.JONES,P.M.COLMAN, REMARK 1 AUTH 2 K.BARTELS,R.HUBER REMARK 1 TITL CRYSTAL STRUCTURE OF THE HUMAN FAB FRAGMENT KOL REMARK 1 TITL 2 AND ITS COMPARISON WITH THE INTACT KOL MOLECULE REMARK 1 REF J.MOL.BIOL. V. 121 441 1978 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH R.HUBER,J.DEISENHOFER,P.M.COLMAN,M.MATSUSHIMA, REMARK 1 AUTH 2 W.PALM REMARK 1 TITL CRYSTALLOGRAPHIC STRUCTURE STUDIES OF AN IGG REMARK 1 TITL 2 MOLECULE AND AN FC FRAGMENT REMARK 1 REF NATURE V. 264 415 1976 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 5 REMARK 1 AUTH P.M.COLMAN,J.DEISENHOFER,R.HUBER,W.PALM REMARK 1 TITL STRUCTURE OF THE HUMAN ANTIBODY MOLECULE KOL REMARK 1 TITL 2 (IMMUNOGLOBULIN G1). AN ELECTRON DENSITY MAP AT 5 REMARK 1 TITL 3 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 100 257 1976 REMARK 1 REFN ISSN 0022-2836
REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : EREF REMARK 3 AUTHORS : JACK,LEVITT REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3312 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2FB4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.15000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 20.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLN L 1 REMARK 475 SER L 2 REMARK 475 GLU L 212 REMARK 475 CYS L 213 REMARK 475 SER L 214 REMARK 475 GLY H 139 REMARK 475 SER H 192 REMARK 475 SER H 220 REMARK 475 CYS H 221
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG L 49 NE CZ NH1 NH2 REMARK 480 MET L 52 CE REMARK 480 ASP L 59 CG OD1 OD2 REMARK 480 SER L 79 OG REMARK 480 GLN L 110 CG CD OE1 NE2 REMARK 480 LYS L 112 CD CE NZ REMARK 480 GLU L 125 CD OE1 OE2 REMARK 480 LYS L 131 CE NZ REMARK 480 LYS L 151 CE NZ REMARK 480 GLY L 154 O REMARK 480 SER L 155 OG REMARK 480 LYS L 158 CG CD CE NZ REMARK 480 ALA L 159 CB REMARK 480 LYS L 165 CD CE NZ REMARK 480 LYS L 168 CD CE NZ REMARK 480 GLN L 169 CD OE1 NE2 REMARK 480 ASN L 172 CB CG OD1 ND2 REMARK 480 GLU L 185 CG CD OE1 OE2 REMARK 480 LYS L 188 CD CE NZ REMARK 480 SER L 202 OG REMARK 480 THR L 211 C O CB OG1 CG2 REMARK 480 LYS H 43 CD CE NZ REMARK 480 LYS H 65 CD CE NZ REMARK 480 LYS H 76 CE NZ REMARK 480 GLN H 110 CG CD OE1 NE2 REMARK 480 LYS H 122 CE NZ REMARK 480 THR H 140 N OG1 CG2 REMARK 480 ALA H 141 CB REMARK 480 SER H 166 CB OG REMARK 480 SER H 193 OG REMARK 480 LEU H 194 CG CD1 CD2 REMARK 480 THR H 196 OG1 CG2 REMARK 480 GLN H 197 CG CD OE1 NE2 REMARK 480 LYS H 206 CG CD CE NZ REMARK 480 LYS H 211 CG CD CE NZ REMARK 480 LYS H 214 NZ REMARK 480 ARG H 215 CD NE CZ NH1 NH2 REMARK 480 GLU H 217 CD OE1 OE2 REMARK 480 LYS H 219 C O CB CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG2 THR L 211 CG HIS H 101A 3656 1.83 REMARK 500 O LYS L 65 NE2 GLN L 110 2665 1.99 REMARK 500 CG2 THR L 211 CB HIS H 101A 3656 2.15 REMARK 500 N ALA H 104 O CYS H 221 3646 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP L 34 NE1 TRP L 34 CE2 -0.096 REMARK 500 TRP L 90 NE1 TRP L 90 CE2 -0.103 REMARK 500 TRP L 150 NE1 TRP L 150 CE2 -0.101 REMARK 500 TRP L 187 NE1 TRP L 187 CE2 -0.103 REMARK 500 TRP H 36 NE1 TRP H 36 CE2 -0.100 REMARK 500 TRP H 47 NE1 TRP H 47 CE2 -0.095 REMARK 500 TRP H 52 NE1 TRP H 52 CE2 -0.100 REMARK 500 TRP H 108 NE1 TRP H 108 CE2 -0.097 REMARK 500 TRP H 159 NE1 TRP H 159 CE2 -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 191 N - CA - CB ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG H 87 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 3 135.10 147.80 REMARK 500 ASN L 27A -84.70 -112.20 REMARK 500 ASP L 50 -53.88 70.33 REMARK 500 GLN L 110 126.39 68.99 REMARK 500 ASP L 140 40.82 38.52 REMARK 500 ASP L 153 -114.55 53.61 REMARK 500 LYS L 158 -81.54 -54.18 REMARK 500 PRO L 210 -6.94 -56.52 REMARK 500 THR L 211 57.17 -49.46 REMARK 500 CYS L 213 21.25 86.50 REMARK 500 HIS H 101A 49.39 -102.26 REMARK 500 HIS H 205 79.16 -111.41 REMARK 500 SER H 220 24.30 -61.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN L 16 0.09 SIDE_CHAIN REMARK 500 GLN L 37 0.07 SIDE_CHAIN REMARK 500 GLU L 82 0.08 SIDE_CHAIN REMARK 500 ASP L 84 0.07 SIDE_CHAIN REMARK 500 GLU L 125 0.08 SIDE_CHAIN REMARK 500 GLU L 126 0.09 SIDE_CHAIN REMARK 500 GLN L 186 0.08 SIDE_CHAIN REMARK 500 GLU L 205 0.07 SIDE_CHAIN REMARK 500 GLN H 13 0.09 SIDE_CHAIN REMARK 500 GLN H 58 0.08 SIDE_CHAIN REMARK 500 ASP H 74 0.08 SIDE_CHAIN REMARK 500 GLU H 89 0.09 SIDE_CHAIN REMARK 500 ASN H 160 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN L 1 10.40 REMARK 500 SER L 29 12.62 REMARK 500 ILE L 74 12.99 REMARK 500 VAL L 107 13.97 REMARK 500 LEU L 137 12.60 REMARK 500 SER L 139 -12.91 REMARK 500 SER L 194 -10.80 REMARK 500 PRO L 210 -10.18 REMARK 500 PRO H 14 10.21 REMARK 500 ALA H 33 10.07 REMARK 500 PHE H 95 -11.48 REMARK 500 LEU H 129 10.20 REMARK 500 VAL H 147 11.55 REMARK 500 SER H 178 12.83 REMARK 500 PRO H 190 10.08 REMARK 500 LEU H 194 13.06 REMARK 500 SER H 208 11.58 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2FB4 H 2 221 UNP P01772 HV3K_HUMAN 2 126 DBREF 2FB4 L 1 214 PDB 2FB4 2FB4 1 214
SEQADV 2FB4 GLN H 6 UNP P01772 GLU 25 CONFLICT SEQADV 2FB4 SER H 23 UNP P01772 ALA 42 CONFLICT SEQADV 2FB4 SER H 24 UNP P01772 ALA 43 CONFLICT SEQADV 2FB4 ILE H 28 UNP P01772 THR 47 CONFLICT SEQADV 2FB4 SER H 31 UNP P01772 ASN 50 CONFLICT SEQADV 2FB4 ALA H 33 UNP P01772 GLY 52 CONFLICT SEQADV 2FB4 TYR H 35 UNP P01772 HIS 54 CONFLICT SEQADV 2FB4 ILE H 50 UNP P01772 ALA 69 CONFLICT SEQADV 2FB4 ASP H 53 UNP P01772 TYR 72 CONFLICT SEQADV 2FB4 ASP H 57 UNP P01772 ASN 76 CONFLICT SEQADV 2FB4 GLN H 58 UNP P01772 LYS 77 CONFLICT SEQADV 2FB4 HIS H 59 UNP P01772 TYR 78 CONFLICT SEQADV 2FB4 ASN H 73 UNP P01772 ASP 92 CONFLICT SEQADV 2FB4 ASP H 74 UNP P01772 ASN 93 CONFLICT SEQADV 2FB4 PHE H 80 UNP P01772 TYR 99 CONFLICT SEQADV 2FB4 LEU H 81 UNP P01772 MET 100 CONFLICT SEQADV 2FB4 ASP H 84 UNP P01772 ASN 103 CONFLICT SEQADV 2FB4 PRO H 88 UNP P01772 ALA 107 CONFLICT SEQADV 2FB4 GLY H 92 UNP P01772 ALA 111 CONFLICT SEQADV 2FB4 PHE H 95 UNP P01772 TYR 114 CONFLICT SEQADV 2FB4 ASP H 99 UNP P01772 GLU 118 CONFLICT SEQADV 2FB4 GLY H 101 UNP P01772 ARG 120 CONFLICT SEQADV 2FB4 HIS H 101A UNP P01772 TRP 121 CONFLICT SEQADV 2FB4 GLY H 101B UNP P01772 VAL 122 CONFLICT SEQADV 2FB4 PHE H 101C UNP P01772 ARG 123 CONFLICT SEQADV 2FB4 CYS H 101D UNP P01772 TYR 124 CONFLICT SEQADV 2FB4 SER H 102 UNP P01772 THR 125 CONFLICT SEQADV 2FB4 SER H 103 UNP P01772 THR 126 CONFLICT SEQADV 2FB4 ALA H 104 UNP P01772 VAL 127 CONFLICT SEQADV 2FB4 SER H 104A UNP P01772 THR 128 CONFLICT SEQADV 2FB4 CYS H 104B UNP P01772 THR 129 CONFLICT SEQADV 2FB4 PHE H 104C UNP P01772 ILE 130 CONFLICT SEQADV 2FB4 H UNP P01772 TYR 132 DELETION SEQADV 2FB4 H UNP P01772 TYR 133 DELETION SEQADV 2FB4 PRO H 105 UNP P01772 PHE 134 CONFLICT SEQADV 2FB4 PRO H 113 UNP P01772 LEU 142 CONFLICT SEQADV 2FB4 GLN H 153 UNP P01772 GLU 182 CONFLICT
SEQRES 1 L 216 GLN SER VAL LEU THR GLN PRO PRO SER ALA SER GLY THR SEQRES 2 L 216 PRO GLY GLN ARG VAL THR ILE SER CYS SER GLY THR SER SEQRES 3 L 216 SER ASN ILE GLY SER SER THR VAL ASN TRP TYR GLN GLN SEQRES 4 L 216 LEU PRO GLY MET ALA PRO LYS LEU LEU ILE TYR ARG ASP SEQRES 5 L 216 ALA MET ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 216 SER LYS SER GLY ALA SER ALA SER LEU ALA ILE GLY GLY SEQRES 7 L 216 LEU GLN SER GLU ASP GLU THR ASP TYR TYR CYS ALA ALA SEQRES 8 L 216 TRP ASP VAL SER LEU ASN ALA TYR VAL PHE GLY THR GLY SEQRES 9 L 216 THR LYS VAL THR VAL LEU GLY GLN PRO LYS ALA ASN PRO SEQRES 10 L 216 THR VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP GLY SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR LYS PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 H 229 GLU VAL GLN LEU VAL GLN SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 229 PRO GLY ARG SER LEU ARG LEU SER CYS SER SER SER GLY SEQRES 3 H 229 PHE ILE PHE SER SER TYR ALA MET TYR TRP VAL ARG GLN SEQRES 4 H 229 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ILE ILE TRP SEQRES 5 H 229 ASP ASP GLY SER ASP GLN HIS TYR ALA ASP SER VAL LYS SEQRES 6 H 229 GLY ARG PHE THR ILE SER ARG ASN ASP SER LYS ASN THR SEQRES 7 H 229 LEU PHE LEU GLN MET ASP SER LEU ARG PRO GLU ASP THR SEQRES 8 H 229 GLY VAL TYR PHE CYS ALA ARG ASP GLY GLY HIS GLY PHE SEQRES 9 H 229 CYS SER SER ALA SER CYS PHE GLY PRO ASP TYR TRP GLY SEQRES 10 H 229 GLN GLY THR PRO VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 H 229 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 H 229 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 229 ASP TYR PHE PRO GLN PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 229 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 229 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 229 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 H 229 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 229 LYS ARG VAL GLU PRO LYS SER CYS
FORMUL 3 HOH *105(H2 O)
HELIX 1 1 GLN L 78 GLU L 82 5 5 HELIX 2 2 SER L 123 ALA L 129 1 7 HELIX 3 3 THR L 183 HIS L 190 1 8 HELIX 4 4 ILE H 28 TYR H 32 5 5 HELIX 5 5 ASP H 62 VAL H 64 5 3 HELIX 6 6 ARG H 87 THR H 91 5 5 HELIX 7 7 SER H 161 ALA H 163 5 3 HELIX 8 8 PRO H 190 SER H 193 5 4
SHEET 1 A 5 SER L 9 GLY L 12 0 SHEET 2 A 5 THR L 103 VAL L 107 1 O LYS L 104 N ALA L 10 SHEET 3 A 5 ASP L 84 ASP L 91 -1 O TYR L 85 N THR L 103 SHEET 4 A 5 ASN L 33 GLN L 37 -1 N ASN L 33 O ALA L 88 SHEET 5 A 5 LYS L 44 ILE L 47 -1 O LYS L 44 N GLN L 36 SHEET 1 B 4 SER L 9 GLY L 12 0 SHEET 2 B 4 THR L 103 VAL L 107 1 O LYS L 104 N ALA L 10 SHEET 3 B 4 ASP L 84 ASP L 91 -1 O TYR L 85 N THR L 103 SHEET 4 B 4 ALA L 96 PHE L 99 -1 O ALA L 96 N ASP L 91 SHEET 1 C 3 ARG L 17 SER L 23 0 SHEET 2 C 3 SER L 69 GLY L 75 -1 N ALA L 70 O CYS L 22 SHEET 3 C 3 PHE L 61 SER L 66 -1 O SER L 62 N ALA L 73 SHEET 1 D 4 THR L 116 PHE L 120 0 SHEET 2 D 4 ALA L 132 PHE L 141 -1 O VAL L 135 N PHE L 120 SHEET 3 D 4 TYR L 174 LEU L 182 -1 N TYR L 174 O PHE L 141 SHEET 4 D 4 VAL L 161 THR L 163 -1 N GLU L 162 O TYR L 179 SHEET 1 E 4 THR L 116 PHE L 120 0 SHEET 2 E 4 ALA L 132 PHE L 141 -1 O VAL L 135 N PHE L 120 SHEET 3 E 4 TYR L 174 LEU L 182 -1 N TYR L 174 O PHE L 141 SHEET 4 E 4 SER L 167 LYS L 168 -1 N SER L 167 O ALA L 175 SHEET 1 F 4 SER L 155 PRO L 156 0 SHEET 2 F 4 THR L 147 ALA L 152 -1 N ALA L 152 O SER L 155 SHEET 3 F 4 TYR L 193 HIS L 199 -1 N SER L 194 O LYS L 151 SHEET 4 F 4 SER L 202 VAL L 208 -1 O SER L 202 N HIS L 199 SHEET 1 G 4 GLN H 3 SER H 7 0 SHEET 2 G 4 LEU H 18 SER H 25 -1 N SER H 21 O SER H 7 SHEET 3 G 4 THR H 78 MET H 83 -1 N LEU H 79 O CYS H 22 SHEET 4 G 4 PHE H 68 ASN H 73 -1 O THR H 69 N GLN H 82 SHEET 1 H 5 GLN H 58 TYR H 60 0 SHEET 2 H 5 LEU H 45 ILE H 51 -1 N ILE H 50 O HIS H 59 SHEET 3 H 5 MET H 34 GLN H 39 -1 O MET H 34 N ILE H 51 SHEET 4 H 5 GLY H 92 ASP H 99 -1 N VAL H 93 O GLN H 39 SHEET 5 H 5 PRO H 105 TRP H 108 -1 N ASP H 106 O ARG H 98 SHEET 1 I 6 GLN H 58 TYR H 60 0 SHEET 2 I 6 LEU H 45 ILE H 51 -1 N ILE H 50 O HIS H 59 SHEET 3 I 6 MET H 34 GLN H 39 -1 O MET H 34 N ILE H 51 SHEET 4 I 6 GLY H 92 ASP H 99 -1 N VAL H 93 O GLN H 39 SHEET 5 I 6 THR H 112 VAL H 116 -1 O THR H 112 N TYR H 94 SHEET 6 I 6 VAL H 11 VAL H 12 1 N VAL H 12 O THR H 115 SHEET 1 J 4 SER H 125 LEU H 129 0 SHEET 2 J 4 ALA H 141 TYR H 150 -1 O GLY H 144 N LEU H 129 SHEET 3 J 4 TYR H 181 VAL H 189 -1 N TYR H 181 O TYR H 150 SHEET 4 J 4 VAL H 168 THR H 170 -1 N HIS H 169 O VAL H 186 SHEET 1 K 4 SER H 125 LEU H 129 0 SHEET 2 K 4 ALA H 141 TYR H 150 -1 O GLY H 144 N LEU H 129 SHEET 3 K 4 TYR H 181 VAL H 189 -1 N TYR H 181 O TYR H 150 SHEET 4 K 4 VAL H 174 LEU H 175 -1 N VAL H 174 O SER H 182 SHEET 1 L 3 THR H 156 TRP H 159 0 SHEET 2 L 3 TYR H 199 HIS H 205 -1 N ASN H 202 O SER H 158 SHEET 3 L 3 THR H 210 VAL H 216 -1 O THR H 210 N HIS H 205
SSBOND 1 CYS L 22 CYS L 87 1555 1555 2.01 SSBOND 2 CYS L 136 CYS L 195 1555 1555 2.00 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 4 CYS H 101D CYS H 104B 1555 1555 2.06 SSBOND 5 CYS H 145 CYS H 201 1555 1555 2.05 SSBOND 6 CYS L 213 CYS H 221 1555 1555 2.06
CISPEP 1 TYR L 142 PRO L 143 0 2.67 CISPEP 2 PHE H 151 PRO H 152 0 -6.25 CISPEP 3 GLN H 153 PRO H 154 0 -0.77
CRYST1 78.300 138.900 40.000 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012771 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007199 0.000000 0.00000
SCALE3 0.000000 0.000000 0.025000 0.00000