10 20 30 40 50 60 70 80 2F9I - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 05-DEC-05 2F9I
TITLE CRYSTAL STRUCTURE OF THE CARBOXYLTRANSFERASE SUBUNIT OF ACC TITLE 2 FROM STAPHYLOCOCCUS AUREUS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYL-COENZYME A CARBOXYLASE CARBOXYL COMPND 3 TRANSFERASE SUBUNIT ALPHA; COMPND 4 CHAIN: A, C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ACETYL-COENZYME A CARBOXYLASE CARBOXYL COMPND 8 TRANSFERASE SUBUNIT BETA; COMPND 9 CHAIN: B, D; COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: ACCA,ACCD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST-T7-202; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 13 ORGANISM_TAXID: 1280; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PDEST-T7-202
KEYWDS ZINC RIBBON, CROTONASE SUPERFAMILY, SPIRAL DOMAIN, KEYWDS 2 TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR P.W.BILDER
REVDAT 2 24-FEB-09 2F9I 1 VERSN REVDAT 1 05-DEC-06 2F9I 0
JRNL AUTH P.BILDER,S.LIGHTLE,G.BAINBRIDGE,J.OHREN,B.FINZEL, JRNL AUTH 2 F.SUN,S.HOLLEY,L.AL-KASSIM,C.SPESSARD,M.MELNICK, JRNL AUTH 3 M.NEWCOMER,G.L.WALDROP JRNL TITL THE STRUCTURE OF THE CARBOXYLTRANSFERASE COMPONENT JRNL TITL 2 OF ACETYL-COA CARBOXYLASE REVEALS A ZINC-BINDING JRNL TITL 3 MOTIF UNIQUE TO THE BACTERIAL ENZYME. JRNL REF BIOCHEMISTRY V. 45 1712 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16460018 JRNL DOI 10.1021/BI0520479
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 90017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9030 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5073 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 558 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8685 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 583 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.434 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8639 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11570 ; 1.606 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1110 ; 4.884 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 364 ;37.848 ;24.176 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1501 ;12.653 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;14.619 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1285 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6408 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4456 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 6012 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 624 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 55 ; 0.378 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.158 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5689 ; 1.332 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8763 ; 1.562 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3312 ; 2.595 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2807 ; 3.835 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 34 A 307 1 REMARK 3 1 C 34 C 307 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2075 ; 0.200 ; 0.050 REMARK 3 TIGHT THERMAL 1 A (A**2): 2075 ; 1.180 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 29 B 283 2 REMARK 3 1 D 29 D 283 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 B (A): 1019 ; 0.120 ; 0.050 REMARK 3 MEDIUM POSITIONAL 2 B (A): 919 ; 0.340 ; 0.500 REMARK 3 TIGHT THERMAL 2 B (A**2): 1019 ; 1.220 ; 0.500 REMARK 3 MEDIUM THERMAL 2 B (A**2): 919 ; 1.570 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2F9I COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB035619.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90018 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.29300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1ON3 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG-400, 0.1M HEPES, PH 8.0, REMARK 280 0.2M MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 95.48950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.42950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 95.48950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.42950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER IN THE ASYMMETRIC REMARK 300 UNIT
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 LYS A 19 REMARK 465 GLU A 20 REMARK 465 SER A 21 REMARK 465 GLN A 22 REMARK 465 ASP A 23 REMARK 465 LYS A 24 REMARK 465 ASN A 25 REMARK 465 ASP A 26 REMARK 465 VAL A 27 REMARK 465 ASP A 28 REMARK 465 LEU A 29 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 LYS B 3 REMARK 465 ASP B 4 REMARK 465 PHE B 5 REMARK 465 PHE B 6 REMARK 465 ASN B 7 REMARK 465 ARG B 8 REMARK 465 THR B 9 REMARK 465 LYS B 10 REMARK 465 LYS B 11 REMARK 465 LYS B 12 REMARK 465 LYS B 13 REMARK 465 TYR B 14 REMARK 465 LEU B 15 REMARK 465 THR B 16 REMARK 465 VAL B 17 REMARK 465 GLN B 18 REMARK 465 ASP B 19 REMARK 465 SER B 20 REMARK 465 LYS B 21 REMARK 465 ASN B 22 REMARK 465 ASN B 23 REMARK 465 ASP B 24 REMARK 465 VAL B 25 REMARK 465 MET C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 HIS C -9 REMARK 465 HIS C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 LEU C -5 REMARK 465 VAL C -4 REMARK 465 PRO C -3 REMARK 465 ARG C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 SER C 17 REMARK 465 LEU C 18 REMARK 465 LYS C 19 REMARK 465 GLU C 20 REMARK 465 SER C 21 REMARK 465 GLN C 22 REMARK 465 ASP C 23 REMARK 465 LYS C 24 REMARK 465 ASN C 25 REMARK 465 ASP C 26 REMARK 465 VAL C 27 REMARK 465 ASP C 28 REMARK 465 LEU C 29 REMARK 465 GLN C 30 REMARK 465 GLU C 31 REMARK 465 GLU C 32 REMARK 465 ILE C 33 REMARK 465 MET D 1 REMARK 465 PHE D 2 REMARK 465 LYS D 3 REMARK 465 ASP D 4 REMARK 465 PHE D 5 REMARK 465 PHE D 6 REMARK 465 ASN D 7 REMARK 465 ARG D 8 REMARK 465 THR D 9 REMARK 465 LYS D 10 REMARK 465 LYS D 11 REMARK 465 LYS D 12 REMARK 465 LYS D 13 REMARK 465 TYR D 14 REMARK 465 LEU D 15 REMARK 465 THR D 16 REMARK 465 VAL D 17 REMARK 465 GLN D 18 REMARK 465 ASP D 19 REMARK 465 SER D 20 REMARK 465 LYS D 21 REMARK 465 ASN D 22 REMARK 465 ASN D 23 REMARK 465 ASP D 24 REMARK 465 VAL D 25 REMARK 465 PRO D 26 REMARK 465 ALA D 27 REMARK 465 GLY D 28 REMARK 465 THR D 284 REMARK 465 LYS D 285
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 16 CG CD OE1 OE2 REMARK 470 LEU A 18 CG CD1 CD2 REMARK 470 GLN A 30 CG CD OE1 NE2 REMARK 470 LYS B 285 CG CD CE NZ REMARK 470 MET C 1 CG SD CE REMARK 470 LYS C 6 CG CD CE NZ REMARK 470 PHE C 9 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU C 10 CG CD OE1 OE2 REMARK 470 ILE C 11 CG1 CG2 CD1 REMARK 470 ARG C 12 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 13 CG OD1 ND2 REMARK 470 LYS C 14 CG CD CE NZ REMARK 470 ILE C 15 CG1 CG2 CD1 REMARK 470 GLU C 16 CG CD OE1 OE2
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A -5 CB REMARK 480 VAL A -4 CB REMARK 480 PRO A -3 CB REMARK 480 ARG A -2 CB REMARK 480 SER A 0 CB REMARK 480 MET A 1 CB REMARK 480 PHE A 9 O REMARK 480 GLU A 10 CB REMARK 480 ARG A 12 CB REMARK 480 ASN A 13 O REMARK 480 LYS A 14 O REMARK 480 ILE A 15 C O REMARK 480 GLU A 16 O REMARK 480 SER A 17 N REMARK 480 LEU A 18 C O REMARK 480 LYS A 46 CD CE REMARK 480 THR A 49 CG2 REMARK 480 ASN A 50 ND2 REMARK 480 GLN A 63 NE2 REMARK 480 LYS A 115 CD REMARK 480 LYS A 118 CD CE NZ REMARK 480 MET A 127 CE REMARK 480 LEU A 230 CD1 REMARK 480 LYS A 232 CG CD CE REMARK 480 ASP A 233 CB OD1 REMARK 480 ASN A 235 CB CG ND2 REMARK 480 LEU A 236 CD2 REMARK 480 GLN A 253 CG REMARK 480 LEU A 265 CD2 REMARK 480 LEU A 277 CD1 REMARK 480 ALA A 285 CB REMARK 480 GLU A 291 CB CG CD OE1 REMARK 480 LYS B 43 CG CD REMARK 480 LYS B 97 CD REMARK 480 GLU B 99 CG REMARK 480 LYS B 100 CG CD REMARK 480 GLU B 154 CG CD OE2 REMARK 480 ARG B 234 CG CD NE REMARK 480 VAL B 235 CG1 REMARK 480 GLN B 238 CG NE2 REMARK 480 GLU B 242 CG REMARK 480 LYS B 243 CE NZ REMARK 480 VAL B 283 CG1 REMARK 480 THR B 284 CG2 REMARK 480 MET C 1 CB REMARK 480 PHE C 9 O REMARK 480 GLU C 10 CB REMARK 480 ARG C 12 CB REMARK 480 ASN C 13 O REMARK 480 LYS C 14 O REMARK 480 ILE C 15 C O REMARK 480 GLU C 16 O REMARK 480 LEU C 36 CB REMARK 480 GLU C 37 CB CG CD OE1 REMARK 480 ALA C 38 CB REMARK 480 SER C 39 O REMARK 480 LEU C 40 O CD1 REMARK 480 LYS C 45 CD NZ REMARK 480 LYS C 46 CG CD CE REMARK 480 THR C 49 CG2 REMARK 480 LYS C 52 CG CD REMARK 480 ASP C 55 CB REMARK 480 ASP C 116 O OD1 REMARK 480 LYS C 118 CB CG CD CE REMARK 480 GLU C 131 OE1 REMARK 480 LYS C 163 CE NZ REMARK 480 LYS C 185 CE NZ REMARK 480 LEU C 230 CD2 REMARK 480 TRP C 231 CD1 REMARK 480 LYS C 232 CD REMARK 480 ASN C 235 CB REMARK 480 GLN C 253 CG CD NE2 REMARK 480 LEU C 265 CD2 REMARK 480 GLU C 291 CG REMARK 480 ILE C 298 CG2 REMARK 480 MET D 30 CE REMARK 480 LYS D 32 CE NZ REMARK 480 LYS D 38 CG CD REMARK 480 ILE D 39 CG2 REMARK 480 LYS D 43 CG CD CE REMARK 480 GLU D 44 OE2 REMARK 480 CYS D 55 N REMARK 480 GLU D 68 CG REMARK 480 LYS D 81 NZ REMARK 480 GLU D 96 CG REMARK 480 GLU D 99 CB REMARK 480 LYS D 108 NZ REMARK 480 MET D 137 CE REMARK 480 ARG D 234 NH1 REMARK 480 GLU D 242 CB CG REMARK 480 LYS D 243 CB CD REMARK 480 ASN D 267 OD1 ND2 REMARK 480 GLN D 281 CD NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 119 O HOH C 473 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A -5 CA LEU A -5 CB 0.351 REMARK 500 VAL A -4 CB VAL A -4 CG1 0.554 REMARK 500 VAL A -4 CB VAL A -4 CG2 0.681 REMARK 500 ARG A -2 CA ARG A -2 CB -0.147 REMARK 500 ARG A -2 CB ARG A -2 CG 0.597 REMARK 500 ARG A 12 CB ARG A 12 CG 0.411 REMARK 500 ILE A 15 CA ILE A 15 C 0.325 REMARK 500 GLU A 16 C GLU A 16 O -0.277 REMARK 500 SER A 17 N SER A 17 CA 0.324 REMARK 500 GLU A 16 C SER A 17 N 0.309 REMARK 500 LEU A 18 CA LEU A 18 C 0.406 REMARK 500 ASP A 34 CB ASP A 34 CG 0.191 REMARK 500 ARG A 42 NE ARG A 42 CZ 0.081 REMARK 500 ARG A 42 CZ ARG A 42 NH1 0.121 REMARK 500 LYS A 46 CE LYS A 46 NZ 0.258 REMARK 500 LYS A 52 CD LYS A 52 CE 0.212 REMARK 500 LYS A 52 CE LYS A 52 NZ -0.217 REMARK 500 GLU A 64 CD GLU A 64 OE2 -0.096 REMARK 500 LYS A 115 CD LYS A 115 CE 0.234 REMARK 500 LYS A 232 CE LYS A 232 NZ -0.847 REMARK 500 ASP A 233 CB ASP A 233 CG 0.321 REMARK 500 ASP A 233 CG ASP A 233 OD1 -0.348 REMARK 500 ASN A 235 CG ASN A 235 OD1 -0.152 REMARK 500 GLN A 253 CG GLN A 253 CD 0.336 REMARK 500 GLU A 291 CD GLU A 291 OE2 -0.572 REMARK 500 LYS B 43 CD LYS B 43 CE 0.208 REMARK 500 LYS B 97 CD LYS B 97 CE 0.420 REMARK 500 GLU B 99 CG GLU B 99 CD 0.290 REMARK 500 LYS B 100 CD LYS B 100 CE 0.203 REMARK 500 GLU B 154 CD GLU B 154 OE1 0.111 REMARK 500 ARG B 234 CB ARG B 234 CG 0.189 REMARK 500 GLN B 238 CG GLN B 238 CD 0.281 REMARK 500 GLU B 242 CB GLU B 242 CG -0.318 REMARK 500 GLU B 242 CG GLU B 242 CD 0.155 REMARK 500 VAL B 283 N VAL B 283 CA 0.148 REMARK 500 LYS C 14 C LYS C 14 O 0.245 REMARK 500 ILE C 15 CA ILE C 15 C 0.229 REMARK 500 LYS C 14 C ILE C 15 N 0.206 REMARK 500 ASP C 34 CA ASP C 34 C 0.216 REMARK 500 LEU C 36 CA LEU C 36 CB 0.437 REMARK 500 LEU C 36 CB LEU C 36 CG 0.662 REMARK 500 LEU C 36 CG LEU C 36 CD1 0.460 REMARK 500 LEU C 36 CG LEU C 36 CD2 0.245 REMARK 500 GLU C 37 CD GLU C 37 OE2 -0.171 REMARK 500 ARG C 42 CZ ARG C 42 NH1 0.101 REMARK 500 LYS C 45 CD LYS C 45 CE 0.435 REMARK 500 LYS C 45 CE LYS C 45 NZ -0.348 REMARK 500 LYS C 46 CE LYS C 46 NZ -0.248 REMARK 500 LYS C 52 CD LYS C 52 CE -0.536 REMARK 500 LYS C 52 CE LYS C 52 NZ -0.344 REMARK 500 REMARK 500 THIS ENTRY HAS 69 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A -5 CB - CA - C ANGL. DEV. = -13.4 DEGREES REMARK 500 LEU A -5 CB - CG - CD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 LEU A -5 CB - CG - CD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 VAL A -4 CA - CB - CG2 ANGL. DEV. = 13.4 DEGREES REMARK 500 ILE A 15 CB - CA - C ANGL. DEV. = -19.3 DEGREES REMARK 500 GLU A 16 CA - C - O ANGL. DEV. = 15.8 DEGREES REMARK 500 SER A 17 N - CA - CB ANGL. DEV. = -18.9 DEGREES REMARK 500 GLU A 16 CA - C - N ANGL. DEV. = -21.0 DEGREES REMARK 500 LEU A 18 CB - CA - C ANGL. DEV. = -11.8 DEGREES REMARK 500 LEU A 18 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 ASP A 34 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 ASP A 34 CB - CG - OD1 ANGL. DEV. = 12.0 DEGREES REMARK 500 ASP A 34 CB - CG - OD2 ANGL. DEV. = -18.2 DEGREES REMARK 500 LEU A 36 CB - CG - CD1 ANGL. DEV. = -14.1 DEGREES REMARK 500 LYS A 46 CD - CE - NZ ANGL. DEV. = -20.4 DEGREES REMARK 500 ASN A 50 OD1 - CG - ND2 ANGL. DEV. = -29.7 DEGREES REMARK 500 ASN A 50 CB - CG - ND2 ANGL. DEV. = 30.2 DEGREES REMARK 500 GLU A 64 OE1 - CD - OE2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LYS A 232 CD - CE - NZ ANGL. DEV. = -20.6 DEGREES REMARK 500 ASP A 233 OD1 - CG - OD2 ANGL. DEV. = 29.1 DEGREES REMARK 500 ASP A 233 CB - CG - OD2 ANGL. DEV. = -29.4 DEGREES REMARK 500 GLN A 253 CG - CD - OE1 ANGL. DEV. = -17.8 DEGREES REMARK 500 ASP A 288 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 GLU A 291 OE1 - CD - OE2 ANGL. DEV. = 7.9 DEGREES REMARK 500 LYS B 97 CD - CE - NZ ANGL. DEV. = -14.3 DEGREES REMARK 500 GLU B 99 CG - CD - OE1 ANGL. DEV. = -30.6 DEGREES REMARK 500 GLU B 99 CG - CD - OE2 ANGL. DEV. = -18.5 DEGREES REMARK 500 GLU B 154 OE1 - CD - OE2 ANGL. DEV. = -14.2 DEGREES REMARK 500 GLU B 154 CG - CD - OE1 ANGL. DEV. = 12.9 DEGREES REMARK 500 ARG B 234 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 234 NE - CZ - NH2 ANGL. DEV. = -10.9 DEGREES REMARK 500 GLN B 238 CG - CD - OE1 ANGL. DEV. = -24.3 DEGREES REMARK 500 GLN B 238 CG - CD - NE2 ANGL. DEV. = -16.1 DEGREES REMARK 500 GLU B 242 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 MET C 1 N - CA - CB ANGL. DEV. = 22.2 DEGREES REMARK 500 LYS C 14 CA - C - O ANGL. DEV. = -18.4 DEGREES REMARK 500 ILE C 15 N - CA - C ANGL. DEV. = -23.8 DEGREES REMARK 500 LYS C 14 CA - C - N ANGL. DEV. = -13.9 DEGREES REMARK 500 LYS C 14 O - C - N ANGL. DEV. = -24.2 DEGREES REMARK 500 GLU C 16 CA - C - O ANGL. DEV. = -28.6 DEGREES REMARK 500 ILE C 15 CA - C - N ANGL. DEV. = 18.5 DEGREES REMARK 500 ILE C 15 O - C - N ANGL. DEV. = -21.8 DEGREES REMARK 500 GLU C 16 C - N - CA ANGL. DEV. = 20.3 DEGREES REMARK 500 ASP C 34 CB - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 ASP C 34 CA - C - O ANGL. DEV. = 13.4 DEGREES REMARK 500 LEU C 36 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 LEU C 36 CA - CB - CG ANGL. DEV. = -34.4 DEGREES REMARK 500 LEU C 36 CD1 - CG - CD2 ANGL. DEV. = -23.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 90 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 31 -29.47 -37.90 REMARK 500 ASN A 87 -42.56 -135.54 REMARK 500 PHE A 88 -47.85 -153.14 REMARK 500 ASP A 155 79.32 -159.94 REMARK 500 SER A 198 -138.11 48.93 REMARK 500 LYS A 232 15.45 53.11 REMARK 500 LYS A 245 69.90 64.54 REMARK 500 ASP A 259 148.83 -173.72 REMARK 500 ASP A 271 81.00 -156.45 REMARK 500 ALA B 27 130.59 63.63 REMARK 500 MET B 134 15.07 59.44 REMARK 500 ALA B 164 108.40 -163.86 REMARK 500 SER B 212 -117.49 -134.89 REMARK 500 LYS C 14 38.09 -99.07 REMARK 500 ILE C 15 -77.41 -132.50 REMARK 500 ASN C 87 -41.41 -142.01 REMARK 500 PHE C 88 -48.79 -151.17 REMARK 500 ASP C 155 79.40 -160.35 REMARK 500 SER C 198 -142.69 55.17 REMARK 500 LYS C 232 17.27 57.18 REMARK 500 LYS C 245 70.00 63.84 REMARK 500 ASP C 271 85.98 -157.67 REMARK 500 SER D 93 -1.63 70.21 REMARK 500 SER D 212 -118.40 -135.90 REMARK 500 LYS D 225 -0.90 69.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 34 0.07 SIDE_CHAIN REMARK 500 GLN A 253 0.18 SIDE_CHAIN REMARK 500 GLU B 99 0.24 SIDE_CHAIN REMARK 500 ARG B 234 0.15 SIDE_CHAIN REMARK 500 GLN B 238 0.22 SIDE_CHAIN REMARK 500 GLU C 131 0.08 SIDE_CHAIN REMARK 500 ASN C 235 0.18 SIDE_CHAIN REMARK 500 GLU C 291 0.09 SIDE_CHAIN REMARK 500 GLU D 68 0.25 SIDE_CHAIN REMARK 500 GLU D 96 0.10 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 15 -12.43 REMARK 500 GLU A 16 -11.99 REMARK 500 ASN C 13 -18.15 REMARK 500 LYS C 14 -45.38 REMARK 500 ILE C 15 14.25 REMARK 500 SER C 39 10.62 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 52 SG REMARK 620 2 CYS B 55 SG 113.5 REMARK 620 3 CYS B 33 SG 107.3 114.3 REMARK 620 4 CYS B 36 SG 104.6 109.2 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 55 SG REMARK 620 2 CYS D 36 SG 105.9 REMARK 620 3 CYS D 52 SG 116.0 108.6 REMARK 620 4 CYS D 33 SG 108.5 111.6 106.4 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 601 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 602
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F9Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CARBOXYLTRANSFERASE SUBUNIT OF ACC REMARK 900 FROM ESCHERICHIA COLI
DBREF 2F9I A 1 314 GB 49244968 CAG43429 1 314 DBREF 2F9I C 1 314 GB 49244968 CAG43429 1 314 DBREF 2F9I B 1 285 GB 49242071 CAG40770 1 285 DBREF 2F9I D 1 285 GB 49242071 CAG40770 1 285
SEQADV 2F9I MET A -12 GB 49244968 CLONING ARTIFACT SEQADV 2F9I HIS A -11 GB 49244968 EXPRESSION TAG SEQADV 2F9I HIS A -10 GB 49244968 EXPRESSION TAG SEQADV 2F9I HIS A -9 GB 49244968 EXPRESSION TAG SEQADV 2F9I HIS A -8 GB 49244968 EXPRESSION TAG SEQADV 2F9I HIS A -7 GB 49244968 EXPRESSION TAG SEQADV 2F9I HIS A -6 GB 49244968 EXPRESSION TAG SEQADV 2F9I LEU A -5 GB 49244968 CLONING ARTIFACT SEQADV 2F9I VAL A -4 GB 49244968 CLONING ARTIFACT SEQADV 2F9I PRO A -3 GB 49244968 CLONING ARTIFACT SEQADV 2F9I ARG A -2 GB 49244968 CLONING ARTIFACT SEQADV 2F9I GLY A -1 GB 49244968 CLONING ARTIFACT SEQADV 2F9I SER A 0 GB 49244968 CLONING ARTIFACT SEQADV 2F9I MET C -12 GB 49244968 CLONING ARTIFACT SEQADV 2F9I HIS C -11 GB 49244968 EXPRESSION TAG SEQADV 2F9I HIS C -10 GB 49244968 EXPRESSION TAG SEQADV 2F9I HIS C -9 GB 49244968 EXPRESSION TAG SEQADV 2F9I HIS C -8 GB 49244968 EXPRESSION TAG SEQADV 2F9I HIS C -7 GB 49244968 EXPRESSION TAG SEQADV 2F9I HIS C -6 GB 49244968 EXPRESSION TAG SEQADV 2F9I LEU C -5 GB 49244968 CLONING ARTIFACT SEQADV 2F9I VAL C -4 GB 49244968 CLONING ARTIFACT SEQADV 2F9I PRO C -3 GB 49244968 CLONING ARTIFACT SEQADV 2F9I ARG C -2 GB 49244968 CLONING ARTIFACT SEQADV 2F9I GLY C -1 GB 49244968 CLONING ARTIFACT SEQADV 2F9I SER C 0 GB 49244968 CLONING ARTIFACT
SEQRES 1 A 327 MET HIS HIS HIS HIS HIS HIS LEU VAL PRO ARG GLY SER SEQRES 2 A 327 MET LEU ASP PHE GLU LYS PRO LEU PHE GLU ILE ARG ASN SEQRES 3 A 327 LYS ILE GLU SER LEU LYS GLU SER GLN ASP LYS ASN ASP SEQRES 4 A 327 VAL ASP LEU GLN GLU GLU ILE ASP MET LEU GLU ALA SER SEQRES 5 A 327 LEU GLU ARG GLU THR LYS LYS ILE TYR THR ASN LEU LYS SEQRES 6 A 327 PRO TRP ASP ARG VAL GLN ILE ALA ARG LEU GLN GLU ARG SEQRES 7 A 327 PRO THR THR LEU ASP TYR ILE PRO TYR ILE PHE ASP SER SEQRES 8 A 327 PHE MET GLU LEU HIS GLY ASP ARG ASN PHE ARG ASP ASP SEQRES 9 A 327 PRO ALA MET ILE GLY GLY ILE GLY PHE LEU ASN GLY ARG SEQRES 10 A 327 ALA VAL THR VAL ILE GLY GLN GLN ARG GLY LYS ASP THR SEQRES 11 A 327 LYS ASP ASN ILE TYR ARG ASN PHE GLY MET ALA HIS PRO SEQRES 12 A 327 GLU GLY TYR ARG LYS ALA LEU ARG LEU MET LYS GLN ALA SEQRES 13 A 327 GLU LYS PHE ASN ARG PRO ILE PHE THR PHE ILE ASP THR SEQRES 14 A 327 LYS GLY ALA TYR PRO GLY LYS ALA ALA GLU GLU ARG GLY SEQRES 15 A 327 GLN SER GLU SER ILE ALA THR ASN LEU ILE GLU MET ALA SEQRES 16 A 327 SER LEU LYS VAL PRO VAL ILE ALA ILE VAL ILE GLY GLU SEQRES 17 A 327 GLY GLY SER GLY GLY ALA LEU GLY ILE GLY ILE ALA ASN SEQRES 18 A 327 LYS VAL LEU MET LEU GLU ASN SER THR TYR SER VAL ILE SEQRES 19 A 327 SER PRO GLU GLY ALA ALA ALA LEU LEU TRP LYS ASP SER SEQRES 20 A 327 ASN LEU ALA LYS ILE ALA ALA GLU THR MET LYS ILE THR SEQRES 21 A 327 ALA HIS ASP ILE LYS GLN LEU GLY ILE ILE ASP ASP VAL SEQRES 22 A 327 ILE SER GLU PRO LEU GLY GLY ALA HIS LYS ASP ILE GLU SEQRES 23 A 327 GLN GLN ALA LEU ALA ILE LYS SER ALA PHE VAL ALA GLN SEQRES 24 A 327 LEU ASP SER LEU GLU SER LEU SER ARG ASP GLU ILE ALA SEQRES 25 A 327 ASN ASP ARG PHE GLU LYS PHE ARG ASN ILE GLY SER TYR SEQRES 26 A 327 ILE GLU SEQRES 1 B 285 MET PHE LYS ASP PHE PHE ASN ARG THR LYS LYS LYS LYS SEQRES 2 B 285 TYR LEU THR VAL GLN ASP SER LYS ASN ASN ASP VAL PRO SEQRES 3 B 285 ALA GLY ILE MET THR LYS CYS PRO LYS CYS LYS LYS ILE SEQRES 4 B 285 MET TYR THR LYS GLU LEU ALA GLU ASN LEU ASN VAL CYS SEQRES 5 B 285 PHE ASN CYS ASP HIS HIS ILE ALA LEU THR ALA TYR LYS SEQRES 6 B 285 ARG ILE GLU ALA ILE SER ASP GLU GLY SER PHE THR GLU SEQRES 7 B 285 PHE ASP LYS GLY MET THR SER ALA ASN PRO LEU ASP PHE SEQRES 8 B 285 PRO SER TYR LEU GLU LYS ILE GLU LYS ASP GLN GLN LYS SEQRES 9 B 285 THR GLY LEU LYS GLU ALA VAL VAL THR GLY THR ALA GLN SEQRES 10 B 285 LEU ASP GLY MET LYS PHE GLY VAL ALA VAL MET ASP SER SEQRES 11 B 285 ARG PHE ARG MET GLY SER MET GLY SER VAL ILE GLY GLU SEQRES 12 B 285 LYS ILE CYS ARG ILE ILE ASP TYR CYS THR GLU ASN ARG SEQRES 13 B 285 LEU PRO PHE ILE LEU PHE SER ALA SER GLY GLY ALA ARG SEQRES 14 B 285 MET GLN GLU GLY ILE ILE SER LEU MET GLN MET GLY LYS SEQRES 15 B 285 THR SER VAL SER LEU LYS ARG HIS SER ASP ALA GLY LEU SEQRES 16 B 285 LEU TYR ILE SER TYR LEU THR HIS PRO THR THR GLY GLY SEQRES 17 B 285 VAL SER ALA SER PHE ALA SER VAL GLY ASP ILE ASN LEU SEQRES 18 B 285 SER GLU PRO LYS ALA LEU ILE GLY PHE ALA GLY ARG ARG SEQRES 19 B 285 VAL ILE GLU GLN THR ILE ASN GLU LYS LEU PRO ASP ASP SEQRES 20 B 285 PHE GLN THR ALA GLU PHE LEU LEU GLU HIS GLY GLN LEU SEQRES 21 B 285 ASP LYS VAL VAL HIS ARG ASN ASP MET ARG GLN THR LEU SEQRES 22 B 285 SER GLU ILE LEU LYS ILE HIS GLN GLU VAL THR LYS SEQRES 1 C 327 MET HIS HIS HIS HIS HIS HIS LEU VAL PRO ARG GLY SER SEQRES 2 C 327 MET LEU ASP PHE GLU LYS PRO LEU PHE GLU ILE ARG ASN SEQRES 3 C 327 LYS ILE GLU SER LEU LYS GLU SER GLN ASP LYS ASN ASP SEQRES 4 C 327 VAL ASP LEU GLN GLU GLU ILE ASP MET LEU GLU ALA SER SEQRES 5 C 327 LEU GLU ARG GLU THR LYS LYS ILE TYR THR ASN LEU LYS SEQRES 6 C 327 PRO TRP ASP ARG VAL GLN ILE ALA ARG LEU GLN GLU ARG SEQRES 7 C 327 PRO THR THR LEU ASP TYR ILE PRO TYR ILE PHE ASP SER SEQRES 8 C 327 PHE MET GLU LEU HIS GLY ASP ARG ASN PHE ARG ASP ASP SEQRES 9 C 327 PRO ALA MET ILE GLY GLY ILE GLY PHE LEU ASN GLY ARG SEQRES 10 C 327 ALA VAL THR VAL ILE GLY GLN GLN ARG GLY LYS ASP THR SEQRES 11 C 327 LYS ASP ASN ILE TYR ARG ASN PHE GLY MET ALA HIS PRO SEQRES 12 C 327 GLU GLY TYR ARG LYS ALA LEU ARG LEU MET LYS GLN ALA SEQRES 13 C 327 GLU LYS PHE ASN ARG PRO ILE PHE THR PHE ILE ASP THR SEQRES 14 C 327 LYS GLY ALA TYR PRO GLY LYS ALA ALA GLU GLU ARG GLY SEQRES 15 C 327 GLN SER GLU SER ILE ALA THR ASN LEU ILE GLU MET ALA SEQRES 16 C 327 SER LEU LYS VAL PRO VAL ILE ALA ILE VAL ILE GLY GLU SEQRES 17 C 327 GLY GLY SER GLY GLY ALA LEU GLY ILE GLY ILE ALA ASN SEQRES 18 C 327 LYS VAL LEU MET LEU GLU ASN SER THR TYR SER VAL ILE SEQRES 19 C 327 SER PRO GLU GLY ALA ALA ALA LEU LEU TRP LYS ASP SER SEQRES 20 C 327 ASN LEU ALA LYS ILE ALA ALA GLU THR MET LYS ILE THR SEQRES 21 C 327 ALA HIS ASP ILE LYS GLN LEU GLY ILE ILE ASP ASP VAL SEQRES 22 C 327 ILE SER GLU PRO LEU GLY GLY ALA HIS LYS ASP ILE GLU SEQRES 23 C 327 GLN GLN ALA LEU ALA ILE LYS SER ALA PHE VAL ALA GLN SEQRES 24 C 327 LEU ASP SER LEU GLU SER LEU SER ARG ASP GLU ILE ALA SEQRES 25 C 327 ASN ASP ARG PHE GLU LYS PHE ARG ASN ILE GLY SER TYR SEQRES 26 C 327 ILE GLU SEQRES 1 D 285 MET PHE LYS ASP PHE PHE ASN ARG THR LYS LYS LYS LYS SEQRES 2 D 285 TYR LEU THR VAL GLN ASP SER LYS ASN ASN ASP VAL PRO SEQRES 3 D 285 ALA GLY ILE MET THR LYS CYS PRO LYS CYS LYS LYS ILE SEQRES 4 D 285 MET TYR THR LYS GLU LEU ALA GLU ASN LEU ASN VAL CYS SEQRES 5 D 285 PHE ASN CYS ASP HIS HIS ILE ALA LEU THR ALA TYR LYS SEQRES 6 D 285 ARG ILE GLU ALA ILE SER ASP GLU GLY SER PHE THR GLU SEQRES 7 D 285 PHE ASP LYS GLY MET THR SER ALA ASN PRO LEU ASP PHE SEQRES 8 D 285 PRO SER TYR LEU GLU LYS ILE GLU LYS ASP GLN GLN LYS SEQRES 9 D 285 THR GLY LEU LYS GLU ALA VAL VAL THR GLY THR ALA GLN SEQRES 10 D 285 LEU ASP GLY MET LYS PHE GLY VAL ALA VAL MET ASP SER SEQRES 11 D 285 ARG PHE ARG MET GLY SER MET GLY SER VAL ILE GLY GLU SEQRES 12 D 285 LYS ILE CYS ARG ILE ILE ASP TYR CYS THR GLU ASN ARG SEQRES 13 D 285 LEU PRO PHE ILE LEU PHE SER ALA SER GLY GLY ALA ARG SEQRES 14 D 285 MET GLN GLU GLY ILE ILE SER LEU MET GLN MET GLY LYS SEQRES 15 D 285 THR SER VAL SER LEU LYS ARG HIS SER ASP ALA GLY LEU SEQRES 16 D 285 LEU TYR ILE SER TYR LEU THR HIS PRO THR THR GLY GLY SEQRES 17 D 285 VAL SER ALA SER PHE ALA SER VAL GLY ASP ILE ASN LEU SEQRES 18 D 285 SER GLU PRO LYS ALA LEU ILE GLY PHE ALA GLY ARG ARG SEQRES 19 D 285 VAL ILE GLU GLN THR ILE ASN GLU LYS LEU PRO ASP ASP SEQRES 20 D 285 PHE GLN THR ALA GLU PHE LEU LEU GLU HIS GLY GLN LEU SEQRES 21 D 285 ASP LYS VAL VAL HIS ARG ASN ASP MET ARG GLN THR LEU SEQRES 22 D 285 SER GLU ILE LEU LYS ILE HIS GLN GLU VAL THR LYS
HET ZN B 601 1 HET ZN D 602 1
HETNAM ZN ZINC ION
FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *583(H2 O)
HELIX 1 1 LEU A 2 PHE A 4 5 3 HELIX 2 2 GLU A 5 SER A 17 1 13 HELIX 3 3 GLU A 32 ASN A 50 1 19 HELIX 4 4 LYS A 52 ARG A 61 1 10 HELIX 5 5 THR A 67 PHE A 76 1 10 HELIX 6 6 ASP A 116 ARG A 123 1 8 HELIX 7 7 ASN A 124 MET A 127 5 4 HELIX 8 8 HIS A 129 PHE A 146 1 18 HELIX 9 9 GLY A 162 ARG A 168 1 7 HELIX 10 10 GLY A 169 SER A 183 1 15 HELIX 11 11 GLY A 197 GLY A 203 1 7 HELIX 12 12 SER A 222 TRP A 231 1 10 HELIX 13 13 ASP A 233 ASN A 235 5 3 HELIX 14 14 LEU A 236 LYS A 245 1 10 HELIX 15 15 THR A 247 LEU A 254 1 8 HELIX 16 16 GLY A 267 LYS A 270 5 4 HELIX 17 17 ASP A 271 SER A 289 1 19 HELIX 18 18 SER A 294 ASN A 308 1 15 HELIX 19 19 THR B 42 ASN B 48 1 7 HELIX 20 20 THR B 62 ILE B 70 1 9 HELIX 21 21 SER B 93 GLY B 106 1 14 HELIX 22 22 PHE B 132 SER B 136 5 5 HELIX 23 23 GLY B 138 ASN B 155 1 18 HELIX 24 24 ARG B 169 GLN B 171 5 3 HELIX 25 25 GLU B 172 ALA B 193 1 22 HELIX 26 26 GLY B 207 ALA B 211 1 5 HELIX 27 27 SER B 212 VAL B 216 5 5 HELIX 28 28 GLY B 232 ASN B 241 1 10 HELIX 29 29 THR B 250 HIS B 257 1 8 HELIX 30 30 HIS B 265 ASN B 267 5 3 HELIX 31 31 ASP B 268 HIS B 280 1 13 HELIX 32 32 GLU C 5 GLU C 16 1 12 HELIX 33 33 ASP C 34 ASN C 50 1 17 HELIX 34 34 LYS C 52 ARG C 61 1 10 HELIX 35 35 THR C 67 PHE C 76 1 10 HELIX 36 36 ASP C 116 ARG C 123 1 8 HELIX 37 37 ASN C 124 MET C 127 5 4 HELIX 38 38 HIS C 129 PHE C 146 1 18 HELIX 39 39 GLY C 162 ARG C 168 1 7 HELIX 40 40 GLY C 169 SER C 183 1 15 HELIX 41 41 GLY C 197 GLY C 203 1 7 HELIX 42 42 SER C 222 TRP C 231 1 10 HELIX 43 43 ASP C 233 ASN C 235 5 3 HELIX 44 44 LEU C 236 LYS C 245 1 10 HELIX 45 45 THR C 247 LEU C 254 1 8 HELIX 46 46 GLY C 267 LYS C 270 5 4 HELIX 47 47 ASP C 271 SER C 289 1 19 HELIX 48 48 SER C 294 ASN C 308 1 15 HELIX 49 49 THR D 42 ASN D 48 1 7 HELIX 50 50 THR D 62 ILE D 70 1 9 HELIX 51 51 SER D 93 GLY D 106 1 14 HELIX 52 52 PHE D 132 SER D 136 5 5 HELIX 53 53 GLY D 138 ASN D 155 1 18 HELIX 54 54 ARG D 169 GLN D 171 5 3 HELIX 55 55 GLU D 172 ALA D 193 1 22 HELIX 56 56 GLY D 207 ALA D 211 1 5 HELIX 57 57 SER D 212 VAL D 216 5 5 HELIX 58 58 GLY D 232 ASN D 241 1 10 HELIX 59 59 THR D 250 HIS D 257 1 8 HELIX 60 60 HIS D 265 HIS D 280 1 16
SHEET 1 A 7 ASP A 77 GLU A 81 0 SHEET 2 A 7 MET A 94 LEU A 101 -1 O ILE A 98 N MET A 80 SHEET 3 A 7 ARG A 104 GLN A 111 -1 O GLY A 110 N ILE A 95 SHEET 4 A 7 ILE A 150 THR A 156 1 O PHE A 151 N ILE A 109 SHEET 5 A 7 VAL A 188 GLY A 196 1 O ILE A 189 N ILE A 150 SHEET 6 A 7 LYS A 209 LEU A 213 1 O LEU A 211 N ALA A 190 SHEET 7 A 7 ASP A 259 ILE A 261 1 O ILE A 261 N MET A 212 SHEET 1 B 2 TYR A 312 ILE A 313 0 SHEET 2 B 2 THR B 84 SER B 85 -1 O THR B 84 N ILE A 313 SHEET 1 C 2 MET B 30 LYS B 32 0 SHEET 2 C 2 ILE B 39 TYR B 41 -1 O MET B 40 N THR B 31 SHEET 1 D 6 THR B 77 PHE B 79 0 SHEET 2 D 6 VAL B 111 LEU B 118 -1 O THR B 115 N THR B 77 SHEET 3 D 6 MET B 121 MET B 128 -1 O VAL B 125 N GLY B 114 SHEET 4 D 6 PHE B 159 SER B 165 1 O PHE B 162 N ALA B 126 SHEET 5 D 6 TYR B 197 THR B 206 1 O TYR B 200 N LEU B 161 SHEET 6 D 6 ILE B 228 GLY B 229 1 O GLY B 229 N THR B 205 SHEET 1 E 7 THR B 77 PHE B 79 0 SHEET 2 E 7 VAL B 111 LEU B 118 -1 O THR B 115 N THR B 77 SHEET 3 E 7 MET B 121 MET B 128 -1 O VAL B 125 N GLY B 114 SHEET 4 E 7 PHE B 159 SER B 165 1 O PHE B 162 N ALA B 126 SHEET 5 E 7 TYR B 197 THR B 206 1 O TYR B 200 N LEU B 161 SHEET 6 E 7 ILE B 219 SER B 222 1 O LEU B 221 N SER B 199 SHEET 7 E 7 LYS B 262 VAL B 263 1 O LYS B 262 N SER B 222 SHEET 1 F 7 ASP C 77 GLU C 81 0 SHEET 2 F 7 MET C 94 LEU C 101 -1 O ILE C 98 N MET C 80 SHEET 3 F 7 ARG C 104 GLN C 111 -1 O GLY C 110 N ILE C 95 SHEET 4 F 7 ILE C 150 THR C 156 1 O PHE C 151 N THR C 107 SHEET 5 F 7 VAL C 188 GLY C 196 1 O ILE C 189 N ILE C 150 SHEET 6 F 7 LYS C 209 LEU C 213 1 O LEU C 211 N ALA C 190 SHEET 7 F 7 ASP C 259 ILE C 261 1 O ILE C 261 N MET C 212 SHEET 1 G 2 TYR C 312 ILE C 313 0 SHEET 2 G 2 THR D 84 SER D 85 -1 O THR D 84 N ILE C 313 SHEET 1 H 2 MET D 30 LYS D 32 0 SHEET 2 H 2 ILE D 39 TYR D 41 -1 O MET D 40 N THR D 31 SHEET 1 I 6 THR D 77 PHE D 79 0 SHEET 2 I 6 VAL D 111 LEU D 118 -1 O THR D 113 N PHE D 79 SHEET 3 I 6 MET D 121 MET D 128 -1 O VAL D 125 N GLY D 114 SHEET 4 I 6 PHE D 159 SER D 165 1 O PHE D 162 N ALA D 126 SHEET 5 I 6 TYR D 197 THR D 206 1 O TYR D 200 N LEU D 161 SHEET 6 I 6 ILE D 228 GLY D 229 1 O GLY D 229 N THR D 205 SHEET 1 J 7 THR D 77 PHE D 79 0 SHEET 2 J 7 VAL D 111 LEU D 118 -1 O THR D 113 N PHE D 79 SHEET 3 J 7 MET D 121 MET D 128 -1 O VAL D 125 N GLY D 114 SHEET 4 J 7 PHE D 159 SER D 165 1 O PHE D 162 N ALA D 126 SHEET 5 J 7 TYR D 197 THR D 206 1 O TYR D 200 N LEU D 161 SHEET 6 J 7 ILE D 219 SER D 222 1 O LEU D 221 N SER D 199 SHEET 7 J 7 LYS D 262 VAL D 263 1 O LYS D 262 N SER D 222
LINK ZN ZN B 601 SG CYS B 52 1555 1555 2.24 LINK ZN ZN B 601 SG CYS B 55 1555 1555 2.24 LINK ZN ZN B 601 SG CYS B 33 1555 1555 2.24 LINK ZN ZN B 601 SG CYS B 36 1555 1555 2.42 LINK ZN ZN D 602 SG CYS D 55 1555 1555 2.31 LINK ZN ZN D 602 SG CYS D 36 1555 1555 2.45 LINK ZN ZN D 602 SG CYS D 52 1555 1555 2.24 LINK ZN ZN D 602 SG CYS D 33 1555 1555 2.25
CISPEP 1 HIS B 203 PRO B 204 0 -11.04 CISPEP 2 HIS D 203 PRO D 204 0 -11.26
SITE 1 AC1 4 CYS B 33 CYS B 36 CYS B 52 CYS B 55 SITE 1 AC2 4 CYS D 33 CYS D 36 CYS D 52 CYS D 55
CRYST1 190.979 50.859 149.639 90.00 113.51 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005236 0.000000 0.002278 0.00000
SCALE2 0.000000 0.019662 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007288 0.00000